Wall clock time and date at job start Tue Mar 31 2020 18:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.09003 * 109.46630 * 304.46909 * 3 2 1 5 5 C 1.50695 * 109.46935 * 184.47301 * 3 2 1 6 6 H 1.08000 * 120.00039 * 243.90835 * 5 3 2 7 7 C 1.37883 * 120.00359 * 63.91533 * 5 3 2 8 8 N 1.31517 * 119.99867 * 9.64045 * 7 5 3 9 9 Si 1.86796 * 120.00391 * 189.64929 * 7 5 3 10 10 H 1.48494 * 109.47422 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47114 * 299.99759 * 9 7 5 12 12 H 1.48505 * 109.47394 * 59.99201 * 9 7 5 13 13 N 1.46491 * 109.47225 * 64.47181 * 3 2 1 14 14 C 1.34776 * 120.00161 * 262.41643 * 13 3 2 15 15 O 1.21279 * 119.99865 * 5.43745 * 14 13 3 16 16 C 1.50697 * 120.00399 * 185.43290 * 14 13 3 17 17 C 1.52996 * 109.47291 * 76.02645 * 16 14 13 18 18 C 1.53006 * 109.47030 * 63.71382 * 17 16 14 19 19 N 1.46498 * 109.47288 * 293.70323 * 18 17 16 20 20 C 1.34600 * 126.43746 * 126.17224 * 19 18 17 21 21 N 1.31066 * 106.67808 * 180.02562 * 20 19 18 22 22 N 1.28845 * 107.99471 * 0.02562 * 21 20 19 23 23 N 1.28737 * 109.39485 * 359.73747 * 22 21 20 24 24 C 1.53007 * 109.47167 * 303.72048 * 17 16 14 25 25 C 1.53006 * 109.46601 * 299.99596 * 24 17 16 26 26 C 1.52995 * 109.47056 * 299.99682 * 25 24 17 27 27 C 1.53007 * 109.47156 * 60.00657 * 26 25 24 28 28 C 1.52995 * 109.47721 * 183.71611 * 17 16 14 29 29 H 1.09004 * 109.46815 * 62.56916 * 1 2 3 30 30 H 1.08996 * 109.46622 * 182.56689 * 1 2 3 31 31 H 1.09002 * 109.46900 * 302.56833 * 1 2 3 32 32 H 1.09003 * 109.47528 * 239.99816 * 2 1 3 33 33 H 1.09000 * 109.47085 * 119.99551 * 2 1 3 34 34 H 0.96998 * 119.99888 * 356.39668 * 8 7 5 35 35 H 0.97001 * 120.00054 * 82.42004 * 13 3 2 36 36 H 1.08999 * 109.47672 * 196.02722 * 16 14 13 37 37 H 1.09003 * 109.47236 * 316.02974 * 16 14 13 38 38 H 1.08999 * 109.46394 * 53.70404 * 18 17 16 39 39 H 1.09003 * 109.46836 * 173.70293 * 18 17 16 40 40 H 1.07994 * 126.65918 * 0.04215 * 20 19 18 41 41 H 1.09001 * 109.47254 * 59.99479 * 24 17 16 42 42 H 1.09001 * 109.47360 * 180.02562 * 24 17 16 43 43 H 1.09003 * 109.46315 * 179.97438 * 25 24 17 44 44 H 1.08997 * 109.47291 * 60.00474 * 25 24 17 45 45 H 1.09001 * 109.47637 * 300.00029 * 26 25 24 46 46 H 1.09003 * 109.47212 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47254 * 179.97438 * 27 26 25 48 48 H 1.08997 * 109.46911 * 59.99380 * 27 26 25 49 49 H 1.09001 * 109.47637 * 179.97438 * 28 17 16 50 50 H 1.08999 * 109.46871 * 300.00517 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6127 1.9789 -0.8473 5 6 3.5429 1.4440 -0.1108 6 1 4.1436 1.8338 0.6976 7 6 4.1511 0.9476 -1.2443 8 7 3.4281 0.6498 -2.3017 9 14 6.0021 0.6981 -1.2781 10 1 6.4046 0.1574 -2.6012 11 1 6.6812 1.9983 -1.0467 12 1 6.3919 -0.2603 -0.2128 13 7 1.6416 2.1013 1.2463 14 6 0.5433 2.8820 1.2747 15 8 -0.1700 2.9608 0.2970 16 6 0.2015 3.6567 2.5212 17 6 1.1248 4.8712 2.6362 18 6 0.8748 5.8152 1.4583 19 7 1.2894 5.1634 0.2135 20 6 0.5373 4.9958 -0.8901 21 7 1.2866 4.3696 -1.7643 22 7 2.4386 4.1628 -1.2256 23 7 2.4454 4.6458 -0.0323 24 6 2.5827 4.4072 2.6172 25 6 2.8327 3.4632 3.7951 26 6 2.5483 4.1978 5.1066 27 6 1.0905 4.6618 5.1256 28 6 0.8405 5.6059 3.9477 29 1 -0.3633 0.4734 -0.9122 30 1 -0.3632 -1.0266 0.0460 31 1 -0.3633 0.5532 0.8661 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.4620 0.7296 -2.2669 35 1 2.1683 1.9758 2.0511 36 1 -0.8345 3.9916 2.4683 37 1 0.3323 3.0170 3.3940 38 1 -0.1867 6.0572 1.4057 39 1 1.4497 6.7307 1.5981 40 1 -0.4849 5.3155 -1.0284 41 1 2.7853 3.8838 1.6828 42 1 3.2405 5.2724 2.6995 43 1 3.8712 3.1322 3.7813 44 1 2.1749 2.5979 3.7132 45 1 3.2062 5.0631 5.1885 46 1 2.7260 3.5252 5.9458 47 1 0.8878 5.1849 6.0602 48 1 0.4327 3.7966 5.0438 49 1 1.4986 6.4709 4.0298 50 1 -0.1981 5.9364 3.9612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593605975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:23 Heat of formation + Delta-G solvation = 83.055110 kcal Electronic energy + Delta-G solvation = -33486.048424 eV Core-core repulsion = 29551.322076 eV Total energy + Delta-G solvation = -3934.726349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40379 -40.42576 -38.19529 -35.56040 -34.94552 -32.55648 -32.27216 -31.47207 -31.09641 -30.39872 -28.35440 -26.78709 -25.99624 -23.29651 -22.94138 -22.65344 -22.37476 -21.06728 -20.62396 -19.68904 -18.59498 -17.36518 -17.08990 -16.82341 -15.93040 -15.36978 -15.27991 -14.96939 -14.68467 -14.34362 -13.96784 -13.79528 -13.60057 -13.42855 -13.17274 -12.73555 -12.50239 -12.41470 -12.32429 -12.08822 -11.96516 -11.82871 -11.72624 -11.39584 -11.23768 -11.12644 -11.01694 -10.60325 -10.48821 -10.47326 -10.34630 -10.26694 -10.18346 -10.02687 -10.00858 -9.86292 -9.71031 -9.11053 -9.02263 -8.66915 -8.01895 -7.74472 -6.13800 -3.83772 2.07803 2.63827 3.15098 3.42885 3.54662 3.58884 3.75669 4.08588 4.21864 4.39057 4.56110 4.70828 4.71960 4.89183 4.93066 4.98146 5.07957 5.14093 5.21766 5.29114 5.41741 5.42632 5.48627 5.55885 5.59801 5.68169 5.74074 5.78370 5.84387 5.99652 6.04953 6.07831 6.17104 6.18172 6.25717 6.29083 6.39738 6.40741 6.57574 6.75986 6.81627 6.99412 7.03100 7.15523 7.26923 7.54496 7.66255 8.09201 8.56172 8.66867 9.01511 9.07644 9.60874 9.85484 11.24075 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.005783 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.364516 B = 4840.200049 C = 5222.927845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.254 3.746 4 H 0.062 0.938 5 C -0.595 4.595 6 H 0.048 0.952 7 C 0.037 3.963 8 N -0.899 5.899 9 Si 1.063 2.937 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.293 1.293 13 N -0.693 5.693 14 C 0.495 3.505 15 O -0.558 6.558 16 C -0.141 4.141 17 C -0.059 4.059 18 C 0.128 3.872 19 N -0.328 5.328 20 C 0.187 3.813 21 N -0.312 5.312 22 N -0.025 5.025 23 N -0.091 5.091 24 C -0.145 4.145 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.102 4.102 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.273 0.727 35 H 0.388 0.612 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.212 0.788 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 11.531 15.932 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.151 3.849 4 H 0.080 0.920 5 C -0.633 4.633 6 H 0.066 0.934 7 C -0.170 4.170 8 N -0.534 5.534 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.220 1.220 13 N -0.342 5.342 14 C 0.280 3.720 15 O -0.438 6.438 16 C -0.182 4.182 17 C -0.060 4.060 18 C 0.005 3.995 19 N -0.130 5.130 20 C -0.111 4.111 21 N -0.160 5.160 22 N -0.019 5.019 23 N -0.076 5.076 24 C -0.183 4.183 25 C -0.160 4.160 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.223 0.777 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.228 0.772 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.159 10.486 13.728 18.029 hybrid contribution -2.090 0.766 2.129 3.080 sum -7.248 11.252 15.858 20.751 Atomic orbital electron populations 1.21727 0.98233 0.98491 1.00956 1.22065 0.92901 1.01129 1.01297 1.19030 0.95615 0.87903 0.82326 0.92044 1.21720 0.89675 1.45905 1.06012 0.93413 1.25423 1.06111 0.93892 0.91580 1.70723 1.08419 1.45719 1.28559 0.83639 0.75258 0.76223 0.75640 1.21055 1.21545 1.22002 1.46625 1.25525 1.46912 1.15113 1.20374 0.81899 0.80515 0.89220 1.90651 1.50351 1.66100 1.36726 1.22093 1.00470 0.97266 0.98332 1.20723 0.97623 0.94073 0.93611 1.22123 1.01778 0.95634 0.79928 1.48523 1.10002 1.40703 1.13774 1.27105 1.00842 0.99584 0.83564 1.75015 0.99826 1.14602 1.26538 1.78901 1.12401 1.12331 0.98274 1.78752 1.03498 1.11663 1.13700 1.22395 0.92699 1.00780 1.02376 1.21622 1.01953 0.98154 0.94227 1.21557 0.96172 1.00193 0.97717 1.21564 0.97306 0.99332 0.97495 1.21499 1.01568 0.98179 0.92764 0.93356 0.95279 0.94401 0.90951 0.94268 0.91546 0.77677 0.89374 0.89199 0.87779 0.88595 0.77172 0.85472 0.91765 0.91264 0.92310 0.91981 0.92226 0.91901 0.91683 0.91168 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.98 37.16 0.33 -2.63 16 2 C -0.13 -3.24 5.29 -26.73 -0.14 -3.38 16 3 C 0.25 6.20 1.15 -69.09 -0.08 6.12 16 4 H 0.06 1.72 5.02 -51.93 -0.26 1.46 16 5 C -0.59 -15.93 8.25 -34.44 -0.28 -16.22 16 6 H 0.05 1.28 7.83 -52.49 -0.41 0.87 16 7 C 0.04 1.03 5.15 -17.82 -0.09 0.94 16 8 N -0.90 -27.29 13.01 55.43 0.72 -26.57 16 9 Si 1.06 25.79 29.91 -169.99 -5.09 20.71 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.69 -13.74 2.76 -54.94 -0.15 -13.89 16 14 C 0.50 8.80 3.17 -10.99 -0.03 8.77 16 15 O -0.56 -11.54 11.88 5.56 0.07 -11.48 16 16 C -0.14 -1.74 4.08 -27.89 -0.11 -1.86 16 17 C -0.06 -0.61 0.51 -154.51 -0.08 -0.69 16 18 C 0.13 1.34 5.44 -4.04 -0.02 1.31 16 19 N -0.33 -5.16 1.91 -62.55 -0.12 -5.28 16 20 C 0.19 3.22 9.55 -90.39 -0.86 2.35 16 21 N -0.31 -6.97 11.91 29.59 0.35 -6.62 16 22 N -0.03 -0.60 11.07 60.35 0.67 0.07 16 23 N -0.09 -1.82 8.68 60.35 0.52 -1.30 16 24 C -0.14 -1.89 3.50 -26.72 -0.09 -1.98 16 25 C -0.12 -1.42 4.88 -26.73 -0.13 -1.55 16 26 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 27 C -0.12 -0.90 5.65 -26.72 -0.15 -1.06 16 28 C -0.10 -0.75 4.73 -26.73 -0.13 -0.88 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.79 6.35 -51.93 -0.33 0.46 16 32 H 0.07 1.93 6.23 -51.93 -0.32 1.61 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.27 8.49 6.00 -40.82 -0.24 8.25 16 35 H 0.39 7.16 5.30 -40.82 -0.22 6.94 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.02 4.82 -51.93 -0.25 0.77 16 38 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.21 2.71 8.06 -52.49 -0.42 2.29 16 41 H 0.13 2.21 3.03 -51.93 -0.16 2.06 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.71 4.90 -51.93 -0.25 0.46 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.52 6.35 -51.93 -0.33 0.19 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -34.19 358.36 -7.15 -41.34 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.49 Total: 9.57 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.04 Total: -11.95 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 1.99 Total: -53.59 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.19 -7.15 -41.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593605975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.392 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds