Wall clock time and date at job start Tue Mar 31 2020 18:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.09003 * 109.46630 * 304.46909 * 3 2 1 5 5 C 1.50695 * 109.46935 * 184.47301 * 3 2 1 6 6 H 1.08000 * 120.00039 * 243.90835 * 5 3 2 7 7 C 1.37883 * 120.00359 * 63.91533 * 5 3 2 8 8 N 1.31517 * 119.99867 * 9.64045 * 7 5 3 9 9 Si 1.86796 * 120.00391 * 189.64929 * 7 5 3 10 10 H 1.48494 * 109.47422 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47114 * 299.99759 * 9 7 5 12 12 H 1.48505 * 109.47394 * 59.99201 * 9 7 5 13 13 N 1.46491 * 109.47225 * 64.47181 * 3 2 1 14 14 C 1.34776 * 120.00161 * 262.41643 * 13 3 2 15 15 O 1.21279 * 119.99865 * 5.43745 * 14 13 3 16 16 C 1.50697 * 120.00399 * 185.43290 * 14 13 3 17 17 C 1.52996 * 109.47291 * 76.02645 * 16 14 13 18 18 C 1.53006 * 109.47030 * 63.71382 * 17 16 14 19 19 N 1.46498 * 109.47288 * 293.70323 * 18 17 16 20 20 C 1.34600 * 126.43746 * 126.17224 * 19 18 17 21 21 N 1.31066 * 106.67808 * 180.02562 * 20 19 18 22 22 N 1.28845 * 107.99471 * 0.02562 * 21 20 19 23 23 N 1.28737 * 109.39485 * 359.73747 * 22 21 20 24 24 C 1.53007 * 109.47167 * 303.72048 * 17 16 14 25 25 C 1.53006 * 109.46601 * 299.99596 * 24 17 16 26 26 C 1.52995 * 109.47056 * 299.99682 * 25 24 17 27 27 C 1.53007 * 109.47156 * 60.00657 * 26 25 24 28 28 C 1.52995 * 109.47721 * 183.71611 * 17 16 14 29 29 H 1.09004 * 109.46815 * 62.56916 * 1 2 3 30 30 H 1.08996 * 109.46622 * 182.56689 * 1 2 3 31 31 H 1.09002 * 109.46900 * 302.56833 * 1 2 3 32 32 H 1.09003 * 109.47528 * 239.99816 * 2 1 3 33 33 H 1.09000 * 109.47085 * 119.99551 * 2 1 3 34 34 H 0.96998 * 119.99888 * 356.39668 * 8 7 5 35 35 H 0.97001 * 120.00054 * 82.42004 * 13 3 2 36 36 H 1.08999 * 109.47672 * 196.02722 * 16 14 13 37 37 H 1.09003 * 109.47236 * 316.02974 * 16 14 13 38 38 H 1.08999 * 109.46394 * 53.70404 * 18 17 16 39 39 H 1.09003 * 109.46836 * 173.70293 * 18 17 16 40 40 H 1.07994 * 126.65918 * 0.04215 * 20 19 18 41 41 H 1.09001 * 109.47254 * 59.99479 * 24 17 16 42 42 H 1.09001 * 109.47360 * 180.02562 * 24 17 16 43 43 H 1.09003 * 109.46315 * 179.97438 * 25 24 17 44 44 H 1.08997 * 109.47291 * 60.00474 * 25 24 17 45 45 H 1.09001 * 109.47637 * 300.00029 * 26 25 24 46 46 H 1.09003 * 109.47212 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47254 * 179.97438 * 27 26 25 48 48 H 1.08997 * 109.46911 * 59.99380 * 27 26 25 49 49 H 1.09001 * 109.47637 * 179.97438 * 28 17 16 50 50 H 1.08999 * 109.46871 * 300.00517 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6127 1.9789 -0.8473 5 6 3.5429 1.4440 -0.1108 6 1 4.1436 1.8338 0.6976 7 6 4.1511 0.9476 -1.2443 8 7 3.4281 0.6498 -2.3017 9 14 6.0021 0.6981 -1.2781 10 1 6.4046 0.1574 -2.6012 11 1 6.6812 1.9983 -1.0467 12 1 6.3919 -0.2603 -0.2128 13 7 1.6416 2.1013 1.2463 14 6 0.5433 2.8820 1.2747 15 8 -0.1700 2.9608 0.2970 16 6 0.2015 3.6567 2.5212 17 6 1.1248 4.8712 2.6362 18 6 0.8748 5.8152 1.4583 19 7 1.2894 5.1634 0.2135 20 6 0.5373 4.9958 -0.8901 21 7 1.2866 4.3696 -1.7643 22 7 2.4386 4.1628 -1.2256 23 7 2.4454 4.6458 -0.0323 24 6 2.5827 4.4072 2.6172 25 6 2.8327 3.4632 3.7951 26 6 2.5483 4.1978 5.1066 27 6 1.0905 4.6618 5.1256 28 6 0.8405 5.6059 3.9477 29 1 -0.3633 0.4734 -0.9122 30 1 -0.3632 -1.0266 0.0460 31 1 -0.3633 0.5532 0.8661 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.4620 0.7296 -2.2669 35 1 2.1683 1.9758 2.0511 36 1 -0.8345 3.9916 2.4683 37 1 0.3323 3.0170 3.3940 38 1 -0.1867 6.0572 1.4057 39 1 1.4497 6.7307 1.5981 40 1 -0.4849 5.3155 -1.0284 41 1 2.7853 3.8838 1.6828 42 1 3.2405 5.2724 2.6995 43 1 3.8712 3.1322 3.7813 44 1 2.1749 2.5979 3.7132 45 1 3.2062 5.0631 5.1885 46 1 2.7260 3.5252 5.9458 47 1 0.8878 5.1849 6.0602 48 1 0.4327 3.7966 5.0438 49 1 1.4986 6.4709 4.0298 50 1 -0.1981 5.9364 3.9612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593605975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:22 Heat of formation + Delta-G solvation = 61.196685 kcal Electronic energy + Delta-G solvation = -33486.996277 eV Core-core repulsion = 29551.322076 eV Total energy + Delta-G solvation = -3935.674201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.79439 -41.53831 -39.48847 -37.21754 -36.22783 -34.25368 -33.43803 -33.08955 -32.59910 -31.39910 -29.60249 -27.88384 -27.67437 -24.95508 -24.52219 -23.86519 -23.34857 -22.33030 -21.92322 -21.31127 -19.69689 -19.04229 -18.34654 -18.12347 -17.32162 -16.74281 -16.61435 -16.13627 -15.73205 -15.60190 -15.39603 -15.28731 -15.04807 -14.63619 -14.35389 -14.12270 -13.97874 -13.72826 -13.68431 -13.40511 -13.19743 -13.06722 -12.82142 -12.73276 -12.53429 -12.42673 -12.36176 -12.20252 -12.11895 -11.96175 -11.91617 -11.79148 -11.63196 -11.38698 -11.16652 -11.03218 -10.83917 -10.72030 -10.48858 -10.37117 -10.18371 -9.45586 -8.38746 -6.06280 0.74760 1.54064 1.54369 1.63272 1.70066 1.79912 2.02135 2.61449 2.77342 3.35575 3.41873 3.54113 3.64097 3.79368 3.92061 4.07610 4.14415 4.20571 4.26279 4.31286 4.35954 4.37960 4.45510 4.50589 4.52421 4.56809 4.65686 4.68804 4.82930 4.84823 4.91589 4.95316 5.06975 5.09150 5.16409 5.23601 5.24196 5.27362 5.32842 5.34629 5.39110 5.47918 5.60243 5.63212 5.65762 5.82500 5.89031 6.07233 6.46309 6.74382 7.04810 7.52864 7.72776 8.13899 8.98290 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.005783 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.364516 B = 4840.200049 C = 5222.927845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C 0.266 3.734 4 H 0.030 0.970 5 C -0.581 4.581 6 H 0.041 0.959 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 1.102 2.898 10 H -0.292 1.292 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.695 5.695 14 C 0.491 3.509 15 O -0.587 6.587 16 C -0.131 4.131 17 C -0.048 4.048 18 C 0.109 3.891 19 N -0.311 5.311 20 C 0.194 3.806 21 N -0.362 5.362 22 N -0.087 5.087 23 N -0.092 5.092 24 C -0.147 4.147 25 C -0.120 4.120 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.093 4.093 29 H 0.024 0.976 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.255 0.745 35 H 0.394 0.606 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 13.636 19.805 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.171 4.171 3 C 0.162 3.838 4 H 0.048 0.952 5 C -0.619 4.619 6 H 0.059 0.941 7 C -0.214 4.214 8 N -0.566 5.566 9 Si 0.927 3.073 10 H -0.218 1.218 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.344 5.344 14 C 0.278 3.722 15 O -0.469 6.469 16 C -0.171 4.171 17 C -0.050 4.050 18 C -0.011 4.011 19 N -0.114 5.114 20 C -0.104 4.104 21 N -0.209 5.209 22 N -0.081 5.081 23 N -0.078 5.078 24 C -0.185 4.185 25 C -0.158 4.158 26 C -0.151 4.151 27 C -0.156 4.156 28 C -0.131 4.131 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.230 0.770 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.163 0.837 39 H 0.140 0.860 40 H 0.267 0.733 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.853 12.613 17.669 22.765 hybrid contribution -1.611 0.188 1.040 1.927 sum -8.465 12.801 18.708 24.198 Atomic orbital electron populations 1.21522 0.96186 0.99802 1.00040 1.21952 0.94674 1.00663 0.99811 1.18496 0.93922 0.87900 0.83517 0.95243 1.21921 0.91273 1.43755 1.04971 0.94104 1.26605 1.09275 0.93863 0.91615 1.70842 1.07380 1.48591 1.29766 0.83129 0.71490 0.76828 0.75868 1.21822 1.20831 1.19559 1.46418 1.26745 1.47610 1.13625 1.21344 0.80415 0.79678 0.90751 1.90642 1.51029 1.66676 1.38551 1.22122 1.02195 0.97420 0.95332 1.20719 0.95056 0.93538 0.95677 1.22834 1.04745 0.96028 0.77461 1.48842 1.08505 1.39192 1.14907 1.27677 1.01693 0.97959 0.83070 1.74846 1.00423 1.16721 1.28954 1.78858 1.13951 1.15231 1.00022 1.78666 1.05308 1.11324 1.12533 1.22290 0.94933 1.00569 1.00710 1.21575 1.00601 0.97980 0.95606 1.21519 0.97705 1.00085 0.95792 1.21586 0.95761 0.99598 0.98642 1.21502 1.03724 0.97896 0.89932 0.95716 0.92948 0.93466 0.94268 0.93714 0.93472 0.76997 0.86858 0.87813 0.83727 0.86032 0.73284 0.89784 0.91748 0.93255 0.93122 0.91524 0.91737 0.89767 0.91777 0.89796 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.98 71.98 0.65 -4.51 16 2 C -0.13 -6.54 5.29 30.60 0.16 -6.38 16 3 C 0.27 13.48 1.15 44.25 0.05 13.53 16 4 H 0.03 1.75 5.02 -2.39 -0.01 1.74 16 5 C -0.58 -32.33 8.25 25.60 0.21 -32.11 16 6 H 0.04 2.27 7.83 -2.91 -0.02 2.25 16 7 C -0.01 -0.80 5.15 84.66 0.44 -0.36 16 8 N -0.93 -59.44 13.01 21.45 0.28 -59.16 16 9 Si 1.10 53.59 29.91 68.60 2.05 55.65 16 10 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 N -0.70 -27.68 2.76 -446.12 -1.23 -28.91 16 14 C 0.49 16.81 3.17 87.66 0.28 17.08 16 15 O -0.59 -23.87 11.88 -3.03 -0.04 -23.90 16 16 C -0.13 -2.74 4.08 29.85 0.12 -2.62 16 17 C -0.05 -0.82 0.51 -52.18 -0.03 -0.84 16 18 C 0.11 1.81 5.44 86.38 0.47 2.28 16 19 N -0.31 -9.34 1.91 -351.82 -0.67 -10.01 16 20 C 0.19 6.52 9.55 180.27 1.72 8.24 16 21 N -0.36 -16.76 11.91 -60.30 -0.72 -17.47 16 22 N -0.09 -4.35 11.07 37.01 0.41 -3.94 16 23 N -0.09 -3.74 8.68 37.02 0.32 -3.42 16 24 C -0.15 -3.58 3.50 30.60 0.11 -3.47 16 25 C -0.12 -2.60 4.88 30.59 0.15 -2.45 16 26 C -0.11 -1.62 5.92 30.59 0.18 -1.44 16 27 C -0.12 -1.18 5.65 30.60 0.17 -1.00 16 28 C -0.09 -0.81 4.73 30.59 0.14 -0.67 16 29 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.94 6.35 -2.39 -0.02 1.92 16 32 H 0.04 2.19 6.23 -2.39 -0.01 2.18 16 33 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 34 H 0.25 16.97 6.00 -92.71 -0.56 16.41 16 35 H 0.39 14.59 5.30 -92.71 -0.49 14.10 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 1.94 4.82 -2.39 -0.01 1.93 16 38 H 0.14 1.31 8.08 -2.39 -0.02 1.29 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.25 5.85 8.06 -2.91 -0.02 5.82 16 41 H 0.08 2.91 3.03 -2.39 -0.01 2.90 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.16 4.90 -2.39 -0.01 1.15 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.68 6.35 -2.39 -0.02 0.67 16 49 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 50 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -82.56 358.36 5.92 -76.64 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.69 Total: 29.26 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 4.83 Total: -14.72 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -1.61 Total: -122.92 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 2.05 Total: 55.65 kcal Total: -82.56 5.92 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593605975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.835 kcal (2) G-P(sol) polarization free energy of solvation -82.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds