Wall clock time and date at job start Tue Mar 31 2020 18:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08999 * 109.70126 * 299.39559 * 3 2 1 5 5 C 1.53190 * 109.58591 * 59.74865 * 3 2 1 6 6 C 1.53040 * 109.30922 * 174.42139 * 5 3 2 7 7 C 1.53045 * 109.54081 * 298.63457 * 6 5 3 8 8 C 1.52767 * 109.37999 * 61.24066 * 7 6 5 9 9 N 1.46922 * 109.00704 * 305.58805 * 8 7 6 10 10 C 1.34773 * 120.63082 * 233.57890 * 9 8 7 11 11 O 1.21279 * 120.00515 * 184.36798 * 10 9 8 12 12 C 1.50706 * 119.99917 * 4.37886 * 10 9 8 13 13 H 1.09000 * 109.47018 * 314.78240 * 12 10 9 14 14 C 1.52996 * 109.47240 * 74.78619 * 12 10 9 15 15 N 1.46498 * 109.47075 * 194.78864 * 12 10 9 16 16 C 1.35318 * 125.86455 * 274.99682 * 15 12 10 17 17 C 1.35355 * 106.17202 * 179.77473 * 16 15 12 18 18 C 1.50704 * 126.74843 * 180.20457 * 17 16 15 19 19 N 1.46509 * 109.46894 * 95.00336 * 18 17 16 20 20 C 1.36929 * 119.99590 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00389 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99952 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99727 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47079 * 90.00109 * 24 22 20 26 26 H 1.48499 * 109.47111 * 210.00068 * 24 22 20 27 27 H 1.48497 * 109.47125 * 329.99964 * 24 22 20 28 28 N 1.33775 * 106.49727 * 0.22321 * 17 16 15 29 29 N 1.28631 * 108.88528 * 0.02562 * 28 17 16 30 30 H 1.09005 * 109.47107 * 295.88202 * 1 2 3 31 31 H 1.08998 * 109.47563 * 55.88044 * 1 2 3 32 32 H 1.09000 * 109.47185 * 175.88558 * 1 2 3 33 33 H 1.09004 * 109.46576 * 240.00473 * 2 1 3 34 34 H 1.08999 * 109.47368 * 120.00346 * 2 1 3 35 35 H 1.08990 * 109.49991 * 294.37620 * 5 3 2 36 36 H 1.09007 * 109.49501 * 54.47083 * 5 3 2 37 37 H 1.08998 * 109.46101 * 58.65539 * 6 5 3 38 38 H 1.08998 * 109.45869 * 178.63124 * 6 5 3 39 39 H 1.08994 * 109.49670 * 181.31614 * 7 6 5 40 40 H 1.09000 * 109.49473 * 301.38831 * 7 6 5 41 41 H 1.08999 * 109.50548 * 185.70489 * 8 7 6 42 42 H 1.08997 * 109.42711 * 65.42598 * 8 7 6 43 43 H 1.08997 * 109.47077 * 52.40606 * 14 12 10 44 44 H 1.08999 * 109.47401 * 172.40931 * 14 12 10 45 45 H 1.09003 * 109.46946 * 292.40707 * 14 12 10 46 46 H 1.07999 * 126.91290 * 0.03490 * 16 15 12 47 47 H 1.09003 * 109.46615 * 214.99485 * 18 17 16 48 48 H 1.08992 * 109.47442 * 335.00117 * 18 17 16 49 49 H 0.97001 * 119.99743 * 359.97438 * 19 18 17 50 50 H 0.97008 * 119.99530 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6876 1.9569 -0.8941 5 6 1.5256 2.1691 1.2467 6 6 2.1504 3.5646 1.3131 7 6 3.6720 3.4397 1.4201 8 6 4.2105 2.7269 0.1809 9 7 3.5091 1.4455 0.0232 10 6 4.2000 0.2942 -0.0924 11 8 3.6136 -0.7467 -0.3013 12 6 5.7014 0.3000 0.0380 13 1 6.1132 1.1265 -0.5411 14 6 6.0848 0.4675 1.5097 15 7 6.2403 -0.9656 -0.4660 16 6 6.3583 -2.1141 0.2396 17 6 6.8946 -3.0236 -0.6073 18 6 7.2188 -4.4624 -0.2980 19 7 6.1012 -5.3146 -0.7117 20 6 6.1691 -6.6698 -0.5280 21 1 7.0466 -7.1105 -0.0785 22 6 5.1100 -7.4773 -0.9195 23 7 5.1755 -8.7800 -0.7434 24 14 3.5919 -6.7149 -1.6964 25 1 3.7668 -6.6553 -3.1698 26 1 2.4017 -7.5418 -1.3722 27 1 3.4003 -5.3417 -1.1647 28 7 7.0806 -2.3938 -1.7728 29 7 6.6862 -1.1751 -1.6552 30 1 -0.3633 0.4486 0.9246 31 1 -0.3634 0.5764 -0.8507 32 1 -0.3633 -1.0250 -0.0737 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.4407 2.2583 1.1942 36 1 1.8020 1.6040 2.1370 37 1 1.8942 4.1204 0.4111 38 1 1.7673 4.0927 2.1862 39 1 4.1144 4.4333 1.4908 40 1 3.9280 2.8631 2.3090 41 1 5.2788 2.5464 0.3002 42 1 4.0387 3.3481 -0.6981 43 1 5.5639 -0.2799 2.1081 44 1 7.1611 0.3372 1.6219 45 1 5.8024 1.4646 1.8475 46 1 6.0768 -2.2742 1.2700 47 1 8.1189 -4.7562 -0.8380 48 1 7.3845 -4.5753 0.7733 49 1 5.3129 -4.9187 -1.1151 50 1 4.4355 -9.3443 -1.0174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603182583.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:54 Heat of formation + Delta-G solvation = 94.652604 kcal Electronic energy + Delta-G solvation = -30275.725529 eV Core-core repulsion = 26341.502085 eV Total energy + Delta-G solvation = -3934.223443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.09528 -41.13190 -38.05291 -36.06333 -34.93833 -34.13327 -33.40963 -31.93902 -30.73652 -30.23121 -29.83704 -26.66196 -26.03668 -24.89339 -24.51628 -22.53296 -22.30801 -21.60030 -21.11976 -20.70340 -19.40653 -17.87959 -17.72383 -17.15174 -16.39353 -15.78310 -15.59983 -15.12836 -15.04114 -14.80277 -14.66805 -14.39609 -14.14976 -14.03781 -13.78981 -13.53585 -13.23926 -13.07024 -12.99229 -12.80393 -12.60286 -12.50138 -12.31378 -12.07692 -11.96604 -11.69358 -11.49705 -11.45758 -11.25340 -11.02605 -10.99453 -10.93357 -10.77508 -10.47541 -10.12121 -10.02118 -9.49832 -9.31044 -9.07002 -8.86074 -8.78674 -7.13024 -5.67265 -3.01950 1.64194 2.03940 2.17525 2.60876 2.88768 3.51084 3.56498 3.59484 3.73307 4.00376 4.07859 4.21180 4.27047 4.29512 4.46733 4.64527 4.68620 4.69900 4.71834 4.85936 4.88276 4.96025 4.99294 5.08202 5.20939 5.24231 5.25995 5.30761 5.35302 5.36258 5.43879 5.49476 5.50810 5.56898 5.65388 5.75232 5.81108 5.84978 5.88666 6.00449 6.07720 6.36751 6.41102 6.65203 6.66317 6.76743 6.86759 7.68842 8.07824 8.51872 8.80095 9.30733 10.03814 10.24477 11.50883 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.003350 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.549342 B = 8355.114186 C = 9862.487589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C 0.150 3.850 4 H 0.074 0.926 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.137 4.137 8 C 0.099 3.901 9 N -0.605 5.605 10 C 0.506 3.494 11 O -0.498 6.498 12 C 0.127 3.873 13 H 0.131 0.869 14 C -0.162 4.162 15 N -0.286 5.286 16 C -0.022 4.022 17 C -0.014 4.014 18 C 0.239 3.761 19 N -0.750 5.750 20 C -0.241 4.241 21 H 0.093 0.907 22 C 0.007 3.993 23 N -0.935 5.935 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.276 1.276 28 N -0.249 5.249 29 N -0.095 5.095 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.186 0.814 47 H 0.047 0.953 48 H 0.045 0.955 49 H 0.364 0.636 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 33.844 8.589 35.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.048 3.952 4 H 0.092 0.908 5 C -0.171 4.171 6 C -0.159 4.159 7 C -0.175 4.175 8 C -0.024 4.024 9 N -0.340 5.340 10 C 0.291 3.709 11 O -0.371 6.371 12 C 0.020 3.980 13 H 0.149 0.851 14 C -0.220 4.220 15 N -0.080 5.080 16 C -0.172 4.172 17 C -0.151 4.151 18 C 0.111 3.889 19 N -0.396 5.396 20 C -0.371 4.371 21 H 0.111 0.889 22 C -0.189 4.189 23 N -0.583 5.583 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.202 1.202 28 N -0.117 5.117 29 N -0.073 5.073 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.203 0.797 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.197 0.803 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.802 33.665 7.141 34.747 hybrid contribution -1.526 0.294 0.517 1.638 sum -6.328 33.959 7.658 35.382 Atomic orbital electron populations 1.21948 0.96376 1.02117 1.01149 1.22125 0.94372 0.93834 1.05485 1.21418 0.77685 0.98181 0.97953 0.90831 1.22063 1.00908 0.95915 0.98228 1.21530 0.94891 0.97009 1.02430 1.21875 0.96658 1.01008 0.97935 1.21839 0.96865 0.84639 0.99045 1.48060 1.06894 1.06108 1.72891 1.20475 0.88814 0.84140 0.77509 1.90900 1.68610 1.31604 1.46018 1.21439 0.92691 0.84975 0.98893 0.85137 1.22198 1.04279 1.04582 0.90977 1.46789 1.41759 1.09885 1.09576 1.23250 1.06653 0.85935 1.01356 1.22460 1.03798 0.98923 0.89916 1.18892 0.92121 0.80123 0.97808 1.42680 1.17159 1.04271 1.75476 1.19041 1.03122 0.80678 1.34212 0.88900 1.24606 0.98023 0.95138 1.01100 1.69705 1.32605 1.02638 1.53332 0.86585 0.83934 0.78546 0.79841 1.20998 1.21771 1.20223 1.75062 1.16913 0.97872 1.21845 1.78249 1.15124 1.13640 1.00329 0.92956 0.93015 0.92273 0.88726 0.91213 0.90271 0.91308 0.91631 0.91399 0.90266 0.91183 0.89575 0.90616 0.90230 0.89496 0.89048 0.79711 0.93514 0.93743 0.80333 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.44 37.16 0.35 -1.10 16 2 C -0.12 -1.35 3.89 -26.73 -0.10 -1.45 16 3 C 0.15 1.22 3.02 -67.60 -0.20 1.01 16 4 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.13 -0.77 4.84 -26.61 -0.13 -0.90 16 6 C -0.12 -0.48 5.89 -26.69 -0.16 -0.63 16 7 C -0.14 -0.43 6.07 -26.83 -0.16 -0.59 16 8 C 0.10 0.42 5.72 -3.93 -0.02 0.40 16 9 N -0.60 -4.82 2.98 -165.48 -0.49 -5.31 16 10 C 0.51 5.73 6.83 -10.98 -0.08 5.66 16 11 O -0.50 -8.07 11.85 5.56 0.07 -8.00 16 12 C 0.13 1.22 2.79 -69.08 -0.19 1.02 16 13 H 0.13 0.94 6.91 -51.93 -0.36 0.58 16 14 C -0.16 -0.96 8.40 37.16 0.31 -0.65 16 15 N -0.29 -4.23 2.85 -55.89 -0.16 -4.39 16 16 C -0.02 -0.35 10.42 -17.04 -0.18 -0.52 16 17 C -0.01 -0.27 6.62 -82.77 -0.55 -0.81 16 18 C 0.24 5.13 6.82 -5.19 -0.04 5.09 16 19 N -0.75 -19.69 5.40 -61.08 -0.33 -20.02 16 20 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 21 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 22 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -30.48 13.97 55.49 0.78 -29.70 16 24 Si 0.88 24.14 27.74 -169.99 -4.71 19.42 16 25 H -0.28 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.28 -7.46 6.52 56.52 0.37 -7.09 16 28 N -0.25 -5.19 12.41 33.29 0.41 -4.78 16 29 N -0.09 -1.73 13.16 60.35 0.79 -0.94 16 30 H 0.05 0.40 6.80 -51.93 -0.35 0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.39 6.20 -51.93 -0.32 1.07 16 34 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 35 H 0.08 0.42 6.85 -51.93 -0.36 0.06 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 41 H 0.09 0.23 4.65 -51.93 -0.24 -0.01 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.54 7.56 -51.93 -0.39 0.15 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.28 6.55 -51.93 -0.34 -0.06 16 46 H 0.19 2.41 7.52 -52.49 -0.39 2.01 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.36 9.85 5.52 -40.82 -0.23 9.63 16 50 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -38.71 387.63 -7.23 -45.93 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.02 Total: 2.64 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.40 Total: -0.71 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: 1.00 Total: -65.13 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.71 Total: 19.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.71 -7.23 -45.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603182583.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.585 kcal (2) G-P(sol) polarization free energy of solvation -38.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds