Wall clock time and date at job start Tue Mar 31 2020 18:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08999 * 109.70126 * 299.39559 * 3 2 1 5 5 C 1.53190 * 109.58591 * 59.74865 * 3 2 1 6 6 C 1.53040 * 109.30922 * 174.42139 * 5 3 2 7 7 C 1.53045 * 109.54081 * 298.63457 * 6 5 3 8 8 C 1.52767 * 109.37999 * 61.24066 * 7 6 5 9 9 N 1.46922 * 109.00704 * 305.58805 * 8 7 6 10 10 C 1.34773 * 120.63082 * 233.57890 * 9 8 7 11 11 O 1.21279 * 120.00515 * 184.36798 * 10 9 8 12 12 C 1.50706 * 119.99917 * 4.37886 * 10 9 8 13 13 H 1.09000 * 109.47018 * 314.78240 * 12 10 9 14 14 C 1.52996 * 109.47240 * 74.78619 * 12 10 9 15 15 N 1.46498 * 109.47075 * 194.78864 * 12 10 9 16 16 C 1.35318 * 125.86455 * 274.99682 * 15 12 10 17 17 C 1.35355 * 106.17202 * 179.77473 * 16 15 12 18 18 C 1.50704 * 126.74843 * 180.20457 * 17 16 15 19 19 N 1.46509 * 109.46894 * 95.00336 * 18 17 16 20 20 C 1.36929 * 119.99590 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00389 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99952 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99727 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47079 * 90.00109 * 24 22 20 26 26 H 1.48499 * 109.47111 * 210.00068 * 24 22 20 27 27 H 1.48497 * 109.47125 * 329.99964 * 24 22 20 28 28 N 1.33775 * 106.49727 * 0.22321 * 17 16 15 29 29 N 1.28631 * 108.88528 * 0.02562 * 28 17 16 30 30 H 1.09005 * 109.47107 * 295.88202 * 1 2 3 31 31 H 1.08998 * 109.47563 * 55.88044 * 1 2 3 32 32 H 1.09000 * 109.47185 * 175.88558 * 1 2 3 33 33 H 1.09004 * 109.46576 * 240.00473 * 2 1 3 34 34 H 1.08999 * 109.47368 * 120.00346 * 2 1 3 35 35 H 1.08990 * 109.49991 * 294.37620 * 5 3 2 36 36 H 1.09007 * 109.49501 * 54.47083 * 5 3 2 37 37 H 1.08998 * 109.46101 * 58.65539 * 6 5 3 38 38 H 1.08998 * 109.45869 * 178.63124 * 6 5 3 39 39 H 1.08994 * 109.49670 * 181.31614 * 7 6 5 40 40 H 1.09000 * 109.49473 * 301.38831 * 7 6 5 41 41 H 1.08999 * 109.50548 * 185.70489 * 8 7 6 42 42 H 1.08997 * 109.42711 * 65.42598 * 8 7 6 43 43 H 1.08997 * 109.47077 * 52.40606 * 14 12 10 44 44 H 1.08999 * 109.47401 * 172.40931 * 14 12 10 45 45 H 1.09003 * 109.46946 * 292.40707 * 14 12 10 46 46 H 1.07999 * 126.91290 * 0.03490 * 16 15 12 47 47 H 1.09003 * 109.46615 * 214.99485 * 18 17 16 48 48 H 1.08992 * 109.47442 * 335.00117 * 18 17 16 49 49 H 0.97001 * 119.99743 * 359.97438 * 19 18 17 50 50 H 0.97008 * 119.99530 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6876 1.9569 -0.8941 5 6 1.5256 2.1691 1.2467 6 6 2.1504 3.5646 1.3131 7 6 3.6720 3.4397 1.4201 8 6 4.2105 2.7269 0.1809 9 7 3.5091 1.4455 0.0232 10 6 4.2000 0.2942 -0.0924 11 8 3.6136 -0.7467 -0.3013 12 6 5.7014 0.3000 0.0380 13 1 6.1132 1.1265 -0.5411 14 6 6.0848 0.4675 1.5097 15 7 6.2403 -0.9656 -0.4660 16 6 6.3583 -2.1141 0.2396 17 6 6.8946 -3.0236 -0.6073 18 6 7.2188 -4.4624 -0.2980 19 7 6.1012 -5.3146 -0.7117 20 6 6.1691 -6.6698 -0.5280 21 1 7.0466 -7.1105 -0.0785 22 6 5.1100 -7.4773 -0.9195 23 7 5.1755 -8.7800 -0.7434 24 14 3.5919 -6.7149 -1.6964 25 1 3.7668 -6.6553 -3.1698 26 1 2.4017 -7.5418 -1.3722 27 1 3.4003 -5.3417 -1.1647 28 7 7.0806 -2.3938 -1.7728 29 7 6.6862 -1.1751 -1.6552 30 1 -0.3633 0.4486 0.9246 31 1 -0.3634 0.5764 -0.8507 32 1 -0.3633 -1.0250 -0.0737 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.4407 2.2583 1.1942 36 1 1.8020 1.6040 2.1370 37 1 1.8942 4.1204 0.4111 38 1 1.7673 4.0927 2.1862 39 1 4.1144 4.4333 1.4908 40 1 3.9280 2.8631 2.3090 41 1 5.2788 2.5464 0.3002 42 1 4.0387 3.3481 -0.6981 43 1 5.5639 -0.2799 2.1081 44 1 7.1611 0.3372 1.6219 45 1 5.8024 1.4646 1.8475 46 1 6.0768 -2.2742 1.2700 47 1 8.1189 -4.7562 -0.8380 48 1 7.3845 -4.5753 0.7733 49 1 5.3129 -4.9187 -1.1151 50 1 4.4355 -9.3443 -1.0174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603182583.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:53 Heat of formation + Delta-G solvation = 66.835137 kcal Electronic energy + Delta-G solvation = -30276.931785 eV Core-core repulsion = 26341.502085 eV Total energy + Delta-G solvation = -3935.429699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.38904 -41.88209 -38.74487 -37.24231 -36.57462 -35.02416 -34.03729 -33.85463 -32.10488 -31.65291 -30.37630 -28.09009 -27.03595 -25.62597 -25.14805 -24.38099 -23.43067 -22.48895 -22.12730 -21.71716 -20.24131 -19.84940 -18.48745 -18.31476 -17.27974 -16.90545 -16.54194 -16.39619 -16.10792 -15.75237 -15.64355 -15.50473 -15.28471 -15.00534 -14.75348 -14.61162 -14.41612 -14.16156 -13.96010 -13.80799 -13.55178 -13.49065 -13.40703 -13.13220 -12.96463 -12.84536 -12.67055 -12.58307 -12.19737 -12.12563 -11.94160 -11.89168 -11.85801 -11.81903 -11.58815 -11.45383 -11.35177 -11.06084 -10.34528 -10.11164 -9.72024 -9.35012 -8.06743 -5.38604 0.44541 1.10505 1.30137 1.32094 1.32846 1.38895 1.41985 1.85048 2.42445 3.06204 3.19458 3.24877 3.47642 3.54150 3.69702 3.77908 3.79350 3.89144 3.91724 4.05313 4.12834 4.19200 4.21483 4.33797 4.40610 4.42848 4.47142 4.55307 4.60368 4.62056 4.74194 4.78690 4.82936 4.91271 4.97549 5.06301 5.07648 5.10767 5.13386 5.15908 5.20416 5.27139 5.31360 5.46779 5.52669 5.62008 5.71871 6.17766 6.17939 6.90913 7.01254 7.42398 7.77105 7.96771 9.14553 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.003350 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.549342 B = 8355.114186 C = 9862.487589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C 0.149 3.851 4 H 0.080 0.920 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.132 4.132 8 C 0.088 3.912 9 N -0.595 5.595 10 C 0.500 3.500 11 O -0.558 6.558 12 C 0.118 3.882 13 H 0.160 0.840 14 C -0.157 4.157 15 N -0.272 5.272 16 C -0.002 4.002 17 C -0.042 4.042 18 C 0.240 3.760 19 N -0.756 5.756 20 C -0.227 4.227 21 H 0.074 0.926 22 C -0.052 4.052 23 N -0.976 5.976 24 Si 0.943 3.057 25 H -0.285 1.285 26 H -0.285 1.285 27 H -0.273 1.273 28 N -0.290 5.290 29 N -0.107 5.107 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.216 0.784 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.359 0.641 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 38.336 10.088 39.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C 0.046 3.954 4 H 0.098 0.902 5 C -0.164 4.164 6 C -0.157 4.157 7 C -0.170 4.170 8 C -0.033 4.033 9 N -0.328 5.328 10 C 0.285 3.715 11 O -0.437 6.437 12 C 0.013 3.987 13 H 0.177 0.823 14 C -0.215 4.215 15 N -0.065 5.065 16 C -0.154 4.154 17 C -0.181 4.181 18 C 0.113 3.887 19 N -0.401 5.401 20 C -0.358 4.358 21 H 0.092 0.908 22 C -0.244 4.244 23 N -0.627 5.627 24 Si 0.772 3.228 25 H -0.212 1.212 26 H -0.212 1.212 27 H -0.199 1.199 28 N -0.158 5.158 29 N -0.085 5.085 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.146 0.854 46 H 0.232 0.768 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.191 0.809 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.190 38.275 8.650 39.582 hybrid contribution -1.373 -0.946 0.099 1.670 sum -6.563 37.330 8.749 38.899 Atomic orbital electron populations 1.21911 0.95056 1.01499 1.02678 1.21899 0.95496 0.95451 1.02295 1.21436 0.77989 0.96286 0.99663 0.90199 1.22007 1.01418 0.96800 0.96197 1.21547 0.95486 0.95456 1.03243 1.21885 0.95996 1.02099 0.97048 1.22230 0.97743 0.82854 1.00429 1.48172 1.06955 1.06632 1.70995 1.20803 0.89473 0.84204 0.76980 1.90909 1.69806 1.33828 1.49129 1.22050 0.91577 0.83335 1.01689 0.82259 1.22302 1.04860 1.06504 0.87805 1.47162 1.39841 1.11186 1.08346 1.23564 1.04265 0.85476 1.02065 1.22220 1.06405 0.98570 0.90855 1.18937 0.90136 0.80906 0.98746 1.42765 1.18365 1.03451 1.75511 1.19091 1.02027 0.82353 1.32314 0.90809 1.25253 1.00958 0.95575 1.02616 1.69831 1.33665 1.03918 1.55274 0.85598 0.80820 0.77782 0.78634 1.21169 1.21153 1.19905 1.74990 1.18644 0.99085 1.23048 1.78118 1.15770 1.12798 1.01860 0.90982 0.91854 0.93970 0.92877 0.93585 0.89639 0.92223 0.91063 0.90329 0.87836 0.91068 0.87553 0.89430 0.91017 0.88389 0.85404 0.76783 0.94193 0.91369 0.80882 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.44 71.98 0.68 -2.12 16 2 C -0.11 -2.61 3.89 30.60 0.12 -2.49 16 3 C 0.15 2.21 3.02 44.98 0.14 2.35 16 4 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.13 -1.15 4.84 30.67 0.15 -1.00 16 6 C -0.12 -0.48 5.89 30.62 0.18 -0.30 16 7 C -0.13 -0.22 6.07 30.53 0.19 -0.03 16 8 C 0.09 0.39 5.72 86.22 0.49 0.88 16 9 N -0.59 -8.19 2.98 -795.85 -2.37 -10.56 16 10 C 0.50 10.70 6.83 87.66 0.60 11.30 16 11 O -0.56 -18.49 11.85 -3.03 -0.04 -18.53 16 12 C 0.12 1.95 2.79 44.25 0.12 2.07 16 13 H 0.16 1.69 6.91 -2.39 -0.02 1.67 16 14 C -0.16 -1.25 8.40 71.98 0.60 -0.65 16 15 N -0.27 -7.63 2.85 -330.73 -0.94 -8.57 16 16 C 0.00 -0.06 10.42 83.49 0.87 0.81 16 17 C -0.04 -1.66 6.62 41.60 0.28 -1.38 16 18 C 0.24 10.31 6.82 85.63 0.58 10.89 16 19 N -0.76 -39.98 5.40 -347.16 -1.87 -41.85 16 20 C -0.23 -13.78 10.47 84.04 0.88 -12.90 16 21 H 0.07 4.69 8.06 -2.91 -0.02 4.67 16 22 C -0.05 -3.26 5.50 84.86 0.47 -2.79 16 23 N -0.98 -64.91 13.97 21.65 0.30 -64.61 16 24 Si 0.94 51.03 27.74 68.60 1.90 52.94 16 25 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 26 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 27 H -0.27 -14.50 6.52 99.48 0.65 -13.86 16 28 N -0.29 -12.19 12.41 -48.59 -0.60 -12.79 16 29 N -0.11 -3.84 13.16 37.02 0.49 -3.35 16 30 H 0.07 1.01 6.80 -2.38 -0.02 0.99 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.67 6.20 -2.39 -0.01 1.66 16 34 H 0.05 1.24 7.27 -2.39 -0.02 1.23 16 35 H 0.09 0.68 6.85 -2.39 -0.02 0.66 16 36 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.07 0.15 8.08 -2.39 -0.02 0.13 16 41 H 0.11 0.04 4.65 -2.39 -0.01 0.03 16 42 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.07 0.75 7.56 -2.39 -0.02 0.73 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.13 0.10 6.55 -2.39 -0.02 0.09 16 46 H 0.22 5.09 7.52 -2.91 -0.02 5.07 16 47 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 49 H 0.36 19.56 5.52 -92.71 -0.51 19.04 16 50 H 0.26 16.41 8.31 -92.70 -0.77 15.64 16 Total: -1.00 -88.59 387.63 3.58 -85.01 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.38 Total: 17.68 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.34 Total: 4.64 kcal Atomic # 7 Polarization: -136.74 SS G_CDS: -5.00 Total: -141.74 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.04 Total: -18.53 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.90 Total: 52.94 kcal Total: -88.59 3.58 -85.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603182583.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.843 kcal (2) G-P(sol) polarization free energy of solvation -88.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds