Wall clock time and date at job start Tue Mar 31 2020 19:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47321 * 2 1 4 4 N 1.46497 * 109.47250 * 120.00314 * 2 1 3 5 5 C 1.34780 * 120.00354 * 298.10880 * 4 2 1 6 6 O 1.21283 * 119.99377 * 5.52867 * 5 4 2 7 7 C 1.50698 * 120.00566 * 185.52950 * 5 4 2 8 8 N 1.46497 * 109.47118 * 186.81160 * 7 5 4 9 9 C 1.35315 * 125.86710 * 125.32503 * 8 7 5 10 10 C 1.35347 * 106.17746 * 180.12043 * 9 8 7 11 11 C 1.50699 * 126.75198 * 179.85639 * 10 9 8 12 12 N 1.46500 * 109.47416 * 94.71149 * 11 10 9 13 13 C 1.36938 * 119.99811 * 179.72487 * 12 11 10 14 14 H 1.07997 * 120.00394 * 0.27278 * 13 12 11 15 15 C 1.38813 * 119.99531 * 180.27099 * 13 12 11 16 16 N 1.31621 * 119.99949 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00125 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47089 * 90.00003 * 17 15 13 19 19 H 1.48505 * 109.46692 * 209.99723 * 17 15 13 20 20 H 1.48499 * 109.46780 * 329.99384 * 17 15 13 21 21 N 1.33767 * 106.49741 * 359.59222 * 10 9 8 22 22 N 1.28644 * 108.88402 * 0.26139 * 21 10 9 23 23 C 1.46505 * 120.00062 * 118.11137 * 4 2 1 24 24 C 1.54264 * 110.03181 * 241.42803 * 23 4 2 25 25 C 1.54968 * 104.16334 * 217.13866 * 24 23 4 26 26 C 1.54891 * 102.77450 * 37.88809 * 25 24 23 27 27 C 1.53876 * 110.03162 * 124.21236 * 23 4 2 28 28 H 1.09006 * 109.46794 * 307.04423 * 1 2 3 29 29 H 1.08998 * 109.47151 * 67.04261 * 1 2 3 30 30 H 1.09001 * 109.47373 * 187.04743 * 1 2 3 31 31 H 1.09006 * 109.47378 * 239.99967 * 2 1 3 32 32 H 1.09002 * 109.47591 * 184.36689 * 3 2 1 33 33 H 1.08998 * 109.47416 * 304.37251 * 3 2 1 34 34 H 1.09003 * 109.46989 * 64.37390 * 3 2 1 35 35 H 1.09002 * 109.47049 * 66.81313 * 7 5 4 36 36 H 1.09000 * 109.46808 * 306.81307 * 7 5 4 37 37 H 1.08005 * 126.90934 * 359.97044 * 9 8 7 38 38 H 1.09002 * 109.47306 * 334.70723 * 11 10 9 39 39 H 1.09008 * 109.47080 * 214.71061 * 11 10 9 40 40 H 0.96995 * 119.99624 * 359.97438 * 12 11 10 41 41 H 0.97003 * 120.00194 * 179.97438 * 16 15 13 42 42 H 1.08992 * 110.01490 * 2.82193 * 23 4 2 43 43 H 1.09002 * 110.48995 * 335.78460 * 24 23 4 44 44 H 1.08998 * 110.48718 * 98.42599 * 24 23 4 45 45 H 1.08999 * 110.71737 * 279.57693 * 25 24 23 46 46 H 1.08992 * 110.92452 * 156.29365 * 25 24 23 47 47 H 1.09003 * 110.48298 * 203.41003 * 26 25 24 48 48 H 1.08997 * 110.59701 * 80.82200 * 26 25 24 49 49 H 1.08993 * 110.03066 * 238.56835 * 27 23 4 50 50 H 1.08996 * 110.03409 * 359.95133 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7245 -0.2085 2.4199 6 8 0.9741 0.7374 2.5349 7 6 2.3283 -0.8446 3.6454 8 7 1.7339 -0.2522 4.8462 9 6 1.1323 -0.9309 5.8504 10 6 0.7293 0.0001 6.7463 11 6 0.0034 -0.2509 8.0429 12 7 0.9731 -0.3283 9.1384 13 6 0.5423 -0.5462 10.4199 14 1 -0.5118 -0.6654 10.6224 15 6 1.4607 -0.6139 11.4586 16 7 1.0467 -0.8228 12.6904 17 14 3.2839 -0.4070 11.1084 18 1 3.6478 1.0291 11.2110 19 1 4.0695 -1.1886 12.0970 20 1 3.5836 -0.8971 9.7391 21 7 1.1071 1.1865 6.2573 22 7 1.6997 1.0027 5.1304 23 6 2.8261 -1.9055 1.0620 24 6 2.1052 -3.0957 1.7280 25 6 3.2489 -3.9199 2.3714 26 6 4.2115 -2.8230 2.8903 27 6 4.1650 -1.7323 1.8003 28 1 -0.3633 0.6191 0.8203 29 1 -0.3633 0.4008 -0.9462 30 1 -0.3634 -1.0199 0.1261 31 1 1.8933 -0.5139 -0.8900 32 1 3.1272 1.4435 -0.0782 33 1 1.6141 1.9784 -0.8482 34 1 1.7421 1.9332 0.9266 35 1 3.4048 -0.6734 3.6506 36 1 2.1308 -1.9165 3.6331 37 1 0.9983 -2.0002 5.9215 38 1 -0.5452 -1.1904 7.9763 39 1 -0.6945 0.5647 8.2324 40 1 1.9198 -0.2215 8.9564 41 1 1.6884 -0.8705 13.4163 42 1 3.0057 -2.1197 0.0085 43 1 1.4127 -2.7430 2.4924 44 1 1.5795 -3.6899 0.9806 45 1 3.7409 -4.5443 1.6257 46 1 2.8750 -4.5271 3.1957 47 1 5.2221 -3.2189 2.9909 48 1 3.8619 -2.4255 3.8431 49 1 4.9943 -1.8634 1.1053 50 1 4.2142 -0.7441 2.2577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603210541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:22 Heat of formation + Delta-G solvation = 102.675416 kcal Electronic energy + Delta-G solvation = -30231.377393 eV Core-core repulsion = 26297.501845 eV Total energy + Delta-G solvation = -3933.875548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05426 -41.29816 -38.40400 -36.34898 -35.15700 -34.01330 -32.46095 -31.82464 -30.24534 -29.70092 -28.90238 -27.62250 -27.49032 -26.04891 -23.66949 -22.39403 -21.79221 -21.29486 -21.20962 -20.81510 -19.39487 -18.11127 -17.45001 -17.18054 -16.46380 -16.09287 -15.79728 -15.57299 -15.14627 -14.63637 -14.60231 -14.42336 -14.32820 -13.93642 -13.65133 -13.60876 -13.19300 -13.10369 -12.71919 -12.63851 -12.44266 -12.14087 -12.08159 -11.94530 -11.77661 -11.73176 -11.63541 -11.55492 -11.47133 -11.26112 -11.14119 -10.97881 -10.82416 -10.46158 -10.23583 -10.11847 -9.63099 -9.54130 -9.16805 -8.89185 -8.83591 -7.17826 -5.71278 -3.06415 1.72212 2.07432 2.13980 2.61245 2.91528 3.43005 3.48519 3.51116 3.66383 3.84396 3.89300 4.14871 4.26660 4.49758 4.52370 4.64507 4.65751 4.68698 4.70029 4.71305 4.80319 4.84168 4.84881 4.96578 5.12717 5.21211 5.23991 5.31353 5.32284 5.42482 5.44533 5.47778 5.50557 5.54666 5.57170 5.61741 5.66954 5.78364 5.80259 5.88827 5.97631 6.22769 6.36184 6.64692 6.65252 6.75819 6.86716 7.70367 8.03984 8.47642 8.85393 9.26087 9.98694 10.19406 11.46987 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002892 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.814690 B = 9681.018196 C =10537.843295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 C -0.172 4.172 4 N -0.605 5.605 5 C 0.508 3.492 6 O -0.491 6.491 7 C 0.078 3.922 8 N -0.294 5.294 9 C -0.050 4.050 10 C -0.009 4.009 11 C 0.238 3.762 12 N -0.750 5.750 13 C -0.241 4.241 14 H 0.093 0.907 15 C 0.006 3.994 16 N -0.934 5.934 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.279 1.279 21 N -0.256 5.256 22 N -0.064 5.064 23 C 0.133 3.867 24 C -0.149 4.149 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.152 4.152 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.189 0.811 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -8.080 -33.842 35.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.046 3.954 3 C -0.230 4.230 4 N -0.340 5.340 5 C 0.293 3.707 6 O -0.364 6.364 7 C -0.047 4.047 8 N -0.088 5.088 9 C -0.200 4.200 10 C -0.146 4.146 11 C 0.110 3.890 12 N -0.396 5.396 13 C -0.371 4.371 14 H 0.111 0.889 15 C -0.190 4.190 16 N -0.582 5.582 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.206 1.206 21 N -0.125 5.125 22 N -0.044 5.044 23 C 0.029 3.971 24 C -0.187 4.187 25 C -0.163 4.163 26 C -0.181 4.181 27 C -0.190 4.190 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.206 0.794 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.143 -6.163 -34.071 35.165 hybrid contribution 1.283 -1.175 -0.061 1.741 sum 7.425 -7.339 -34.132 35.693 Atomic orbital electron populations 1.22231 0.94596 1.02588 1.03348 1.21088 0.94851 0.93464 0.86028 1.22222 1.00834 0.95797 1.04169 1.48238 1.53401 1.27047 1.05348 1.20214 0.81999 0.84316 0.84207 1.90797 1.33641 1.26469 1.85468 1.23090 1.00233 0.99893 0.81449 1.46836 1.39676 1.06481 1.15827 1.23386 1.04855 1.00802 0.90942 1.22488 1.03750 0.88681 0.99705 1.18908 0.90708 0.99317 0.80104 1.42661 1.04111 1.88840 1.03952 1.19056 0.94973 1.41229 0.81835 0.88887 1.24628 0.97348 1.01889 0.95120 1.69701 1.33291 1.56556 0.98672 0.86547 0.87075 0.78011 0.76910 1.20961 1.21766 1.20581 1.75145 1.11329 1.23747 1.02233 1.78385 1.17948 0.96991 1.11040 1.21990 0.89932 0.83639 1.01566 1.23072 0.98391 0.96526 1.00717 1.22524 0.95614 0.97374 1.00768 1.22755 1.01082 0.96002 0.98307 1.22876 0.97315 1.00045 0.98808 0.90269 0.91801 0.92722 0.89552 0.92714 0.91539 0.90160 0.84973 0.84240 0.79409 0.93660 0.93423 0.80505 0.93081 0.88026 0.90796 0.90136 0.90566 0.90509 0.90413 0.90844 0.89900 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.03 37.15 0.34 -1.01 16 2 C 0.15 1.01 3.29 -67.94 -0.22 0.79 16 3 C -0.17 -1.37 9.15 37.16 0.34 -1.03 16 4 N -0.61 -4.33 2.39 -157.33 -0.38 -4.70 16 5 C 0.51 5.44 6.10 -10.98 -0.07 5.38 16 6 O -0.49 -7.42 11.88 5.56 0.07 -7.35 16 7 C 0.08 0.76 3.94 -5.20 -0.02 0.74 16 8 N -0.29 -4.38 3.24 -62.44 -0.20 -4.58 16 9 C -0.05 -0.77 11.50 -17.05 -0.20 -0.97 16 10 C -0.01 -0.17 6.61 -82.78 -0.55 -0.72 16 11 C 0.24 5.02 6.82 -5.19 -0.04 4.99 16 12 N -0.75 -18.94 5.40 -61.08 -0.33 -19.27 16 13 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 14 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -29.85 13.97 55.49 0.78 -29.07 16 17 Si 0.88 23.04 27.74 -169.99 -4.71 18.32 16 18 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 21 N -0.26 -5.44 12.41 33.29 0.41 -5.03 16 22 N -0.06 -1.22 12.01 60.35 0.72 -0.50 16 23 C 0.13 0.56 3.37 -66.81 -0.23 0.33 16 24 C -0.15 -0.59 5.85 -25.03 -0.15 -0.74 16 25 C -0.12 -0.42 6.76 -24.69 -0.17 -0.58 16 26 C -0.14 -0.58 5.98 -25.07 -0.15 -0.73 16 27 C -0.15 -0.62 5.64 -25.61 -0.14 -0.76 16 28 H 0.08 0.89 6.35 -51.93 -0.33 0.56 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.38 7.57 -51.93 -0.39 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.92 6.11 -51.93 -0.32 0.60 16 35 H 0.13 1.09 4.71 -51.93 -0.24 0.85 16 36 H 0.14 0.96 3.51 -51.93 -0.18 0.77 16 37 H 0.19 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 40 H 0.36 9.21 5.52 -40.82 -0.23 8.99 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.10 0.26 7.58 -51.93 -0.39 -0.13 16 43 H 0.07 0.39 5.39 -51.93 -0.28 0.11 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.36 5.25 -51.93 -0.27 0.09 16 49 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.08 0.42 5.49 -51.93 -0.28 0.14 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -37.82 381.27 -6.99 -44.81 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.59 Total: 3.04 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.50 Total: -1.41 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: 1.00 Total: -63.16 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.07 Total: -7.35 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.82 -6.99 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603210541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.487 kcal (2) G-P(sol) polarization free energy of solvation -37.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds