Wall clock time and date at job start Tue Mar 31 2020 19:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47321 * 2 1 4 4 N 1.46497 * 109.47250 * 120.00314 * 2 1 3 5 5 C 1.34780 * 120.00354 * 298.10880 * 4 2 1 6 6 O 1.21283 * 119.99377 * 5.52867 * 5 4 2 7 7 C 1.50698 * 120.00566 * 185.52950 * 5 4 2 8 8 N 1.46497 * 109.47118 * 186.81160 * 7 5 4 9 9 C 1.35315 * 125.86710 * 125.32503 * 8 7 5 10 10 C 1.35347 * 106.17746 * 180.12043 * 9 8 7 11 11 C 1.50699 * 126.75198 * 179.85639 * 10 9 8 12 12 N 1.46500 * 109.47416 * 94.71149 * 11 10 9 13 13 C 1.36938 * 119.99811 * 179.72487 * 12 11 10 14 14 H 1.07997 * 120.00394 * 0.27278 * 13 12 11 15 15 C 1.38813 * 119.99531 * 180.27099 * 13 12 11 16 16 N 1.31621 * 119.99949 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00125 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47089 * 90.00003 * 17 15 13 19 19 H 1.48505 * 109.46692 * 209.99723 * 17 15 13 20 20 H 1.48499 * 109.46780 * 329.99384 * 17 15 13 21 21 N 1.33767 * 106.49741 * 359.59222 * 10 9 8 22 22 N 1.28644 * 108.88402 * 0.26139 * 21 10 9 23 23 C 1.46505 * 120.00062 * 118.11137 * 4 2 1 24 24 C 1.54264 * 110.03181 * 241.42803 * 23 4 2 25 25 C 1.54968 * 104.16334 * 217.13866 * 24 23 4 26 26 C 1.54891 * 102.77450 * 37.88809 * 25 24 23 27 27 C 1.53876 * 110.03162 * 124.21236 * 23 4 2 28 28 H 1.09006 * 109.46794 * 307.04423 * 1 2 3 29 29 H 1.08998 * 109.47151 * 67.04261 * 1 2 3 30 30 H 1.09001 * 109.47373 * 187.04743 * 1 2 3 31 31 H 1.09006 * 109.47378 * 239.99967 * 2 1 3 32 32 H 1.09002 * 109.47591 * 184.36689 * 3 2 1 33 33 H 1.08998 * 109.47416 * 304.37251 * 3 2 1 34 34 H 1.09003 * 109.46989 * 64.37390 * 3 2 1 35 35 H 1.09002 * 109.47049 * 66.81313 * 7 5 4 36 36 H 1.09000 * 109.46808 * 306.81307 * 7 5 4 37 37 H 1.08005 * 126.90934 * 359.97044 * 9 8 7 38 38 H 1.09002 * 109.47306 * 334.70723 * 11 10 9 39 39 H 1.09008 * 109.47080 * 214.71061 * 11 10 9 40 40 H 0.96995 * 119.99624 * 359.97438 * 12 11 10 41 41 H 0.97003 * 120.00194 * 179.97438 * 16 15 13 42 42 H 1.08992 * 110.01490 * 2.82193 * 23 4 2 43 43 H 1.09002 * 110.48995 * 335.78460 * 24 23 4 44 44 H 1.08998 * 110.48718 * 98.42599 * 24 23 4 45 45 H 1.08999 * 110.71737 * 279.57693 * 25 24 23 46 46 H 1.08992 * 110.92452 * 156.29365 * 25 24 23 47 47 H 1.09003 * 110.48298 * 203.41003 * 26 25 24 48 48 H 1.08997 * 110.59701 * 80.82200 * 26 25 24 49 49 H 1.08993 * 110.03066 * 238.56835 * 27 23 4 50 50 H 1.08996 * 110.03409 * 359.95133 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7245 -0.2085 2.4199 6 8 0.9741 0.7374 2.5349 7 6 2.3283 -0.8446 3.6454 8 7 1.7339 -0.2522 4.8462 9 6 1.1323 -0.9309 5.8504 10 6 0.7293 0.0001 6.7463 11 6 0.0034 -0.2509 8.0429 12 7 0.9731 -0.3283 9.1384 13 6 0.5423 -0.5462 10.4199 14 1 -0.5118 -0.6654 10.6224 15 6 1.4607 -0.6139 11.4586 16 7 1.0467 -0.8228 12.6904 17 14 3.2839 -0.4070 11.1084 18 1 3.6478 1.0291 11.2110 19 1 4.0695 -1.1886 12.0970 20 1 3.5836 -0.8971 9.7391 21 7 1.1071 1.1865 6.2573 22 7 1.6997 1.0027 5.1304 23 6 2.8261 -1.9055 1.0620 24 6 2.1052 -3.0957 1.7280 25 6 3.2489 -3.9199 2.3714 26 6 4.2115 -2.8230 2.8903 27 6 4.1650 -1.7323 1.8003 28 1 -0.3633 0.6191 0.8203 29 1 -0.3633 0.4008 -0.9462 30 1 -0.3634 -1.0199 0.1261 31 1 1.8933 -0.5139 -0.8900 32 1 3.1272 1.4435 -0.0782 33 1 1.6141 1.9784 -0.8482 34 1 1.7421 1.9332 0.9266 35 1 3.4048 -0.6734 3.6506 36 1 2.1308 -1.9165 3.6331 37 1 0.9983 -2.0002 5.9215 38 1 -0.5452 -1.1904 7.9763 39 1 -0.6945 0.5647 8.2324 40 1 1.9198 -0.2215 8.9564 41 1 1.6884 -0.8705 13.4163 42 1 3.0057 -2.1197 0.0085 43 1 1.4127 -2.7430 2.4924 44 1 1.5795 -3.6899 0.9806 45 1 3.7409 -4.5443 1.6257 46 1 2.8750 -4.5271 3.1957 47 1 5.2221 -3.2189 2.9909 48 1 3.8619 -2.4255 3.8431 49 1 4.9943 -1.8634 1.1053 50 1 4.2142 -0.7441 2.2577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603210541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:22 Heat of formation + Delta-G solvation = 75.878270 kcal Electronic energy + Delta-G solvation = -30232.539404 eV Core-core repulsion = 26297.501845 eV Total energy + Delta-G solvation = -3935.037560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.34172 -41.95084 -38.96312 -37.26876 -36.76233 -35.26943 -33.80745 -33.03373 -31.96565 -30.26765 -29.54672 -28.15561 -28.11182 -27.77832 -24.53839 -24.34371 -22.88414 -22.23543 -21.67138 -21.63129 -20.17467 -19.83947 -18.69905 -17.94579 -17.21403 -16.94405 -16.67751 -16.38045 -16.27704 -16.02360 -15.77566 -15.51747 -15.14635 -14.97134 -14.88454 -14.47073 -14.28773 -14.17917 -13.95821 -13.65064 -13.44045 -13.28788 -12.94832 -12.90951 -12.67047 -12.65135 -12.50731 -12.18941 -12.13729 -12.10879 -12.05921 -11.95885 -11.87643 -11.80986 -11.63163 -11.46923 -11.26939 -11.02495 -10.59178 -10.26074 -9.77507 -9.32362 -8.02153 -5.35792 0.53332 1.15397 1.32025 1.34663 1.41069 1.43327 1.48123 1.87527 2.48133 3.00385 3.26961 3.30138 3.50021 3.56354 3.64819 3.73242 3.80727 3.93077 3.94950 4.03847 4.13380 4.17504 4.23719 4.39619 4.42361 4.47207 4.50913 4.54674 4.64785 4.69141 4.70553 4.81353 4.83993 4.89432 4.96424 5.06455 5.09716 5.10991 5.12738 5.23071 5.29392 5.31168 5.31920 5.42676 5.52483 5.66537 5.75274 6.21301 6.22289 6.97450 7.05400 7.48622 7.79998 8.00905 9.19048 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002892 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.814690 B = 9681.018196 C =10537.843295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 C -0.169 4.169 4 N -0.592 5.592 5 C 0.503 3.497 6 O -0.544 6.544 7 C 0.072 3.928 8 N -0.281 5.281 9 C -0.022 4.022 10 C -0.041 4.041 11 C 0.241 3.759 12 N -0.751 5.751 13 C -0.232 4.232 14 H 0.067 0.933 15 C -0.058 4.058 16 N -0.980 5.980 17 Si 0.951 3.049 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.256 1.256 21 N -0.301 5.301 22 N -0.089 5.089 23 C 0.128 3.872 24 C -0.148 4.148 25 C -0.119 4.119 26 C -0.147 4.147 27 C -0.151 4.151 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.151 0.849 36 H 0.174 0.826 37 H 0.235 0.765 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.363 0.637 41 H 0.259 0.741 42 H 0.130 0.870 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -10.759 -37.305 39.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.227 4.227 4 N -0.326 5.326 5 C 0.289 3.711 6 O -0.421 6.421 7 C -0.051 4.051 8 N -0.075 5.075 9 C -0.172 4.172 10 C -0.179 4.179 11 C 0.114 3.886 12 N -0.397 5.397 13 C -0.362 4.362 14 H 0.085 0.915 15 C -0.250 4.250 16 N -0.630 5.630 17 Si 0.779 3.221 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.181 1.181 21 N -0.168 5.168 22 N -0.069 5.069 23 C 0.026 3.974 24 C -0.186 4.186 25 C -0.157 4.157 26 C -0.184 4.184 27 C -0.189 4.189 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.168 0.832 36 H 0.191 0.809 37 H 0.252 0.748 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.195 0.805 41 H 0.068 0.932 42 H 0.148 0.852 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.118 0.882 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.305 -8.864 -37.630 39.542 hybrid contribution 0.553 -0.388 0.853 1.088 sum 8.858 -9.252 -36.777 38.944 Atomic orbital electron populations 1.22168 0.95562 1.02031 1.02547 1.21253 0.94120 0.93189 0.87061 1.22168 1.01401 0.96590 1.02505 1.48315 1.52549 1.27440 1.04266 1.20396 0.81516 0.83749 0.85428 1.90803 1.36167 1.28816 1.86279 1.23675 1.00827 1.01206 0.79351 1.47171 1.38137 1.05471 1.16734 1.23936 1.01931 1.02123 0.89258 1.22291 1.05996 0.89497 1.00124 1.18897 0.89982 0.99718 0.80019 1.42666 1.04849 1.88630 1.03582 1.19057 0.93896 1.39629 0.83651 0.91518 1.25392 1.02138 1.02543 0.94886 1.69861 1.34897 1.58516 0.99769 0.85471 0.81258 0.77497 0.77906 1.21521 1.21342 1.18126 1.75073 1.12814 1.25438 1.03512 1.78301 1.18823 0.99104 1.10637 1.22317 0.89457 0.82219 1.03441 1.23066 0.98385 0.96494 1.00672 1.22514 0.95054 0.97097 1.01057 1.22770 1.01673 0.96215 0.97757 1.22866 0.97768 0.99088 0.99139 0.94226 0.90244 0.92258 0.85629 0.91859 0.90398 0.94189 0.83195 0.80931 0.74821 0.91224 0.95076 0.80457 0.93208 0.85244 0.92244 0.88900 0.89239 0.90498 0.89852 0.91846 0.88208 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.03 71.98 0.65 -1.78 16 2 C 0.15 1.66 3.29 44.99 0.15 1.81 16 3 C -0.17 -2.54 9.15 71.98 0.66 -1.89 16 4 N -0.59 -7.11 2.39 -770.06 -1.84 -8.95 16 5 C 0.50 10.33 6.10 87.66 0.53 10.86 16 6 O -0.54 -16.95 11.88 -3.04 -0.04 -16.98 16 7 C 0.07 1.26 3.94 85.63 0.34 1.60 16 8 N -0.28 -8.01 3.24 -351.47 -1.14 -9.15 16 9 C -0.02 -0.61 11.50 83.49 0.96 0.35 16 10 C -0.04 -1.57 6.61 41.60 0.28 -1.29 16 11 C 0.24 10.13 6.82 85.63 0.58 10.72 16 12 N -0.75 -37.67 5.40 -347.17 -1.87 -39.55 16 13 C -0.23 -13.64 10.47 84.03 0.88 -12.76 16 14 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 15 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 16 N -0.98 -63.78 13.97 21.65 0.30 -63.48 16 17 Si 0.95 47.57 27.74 68.60 1.90 49.47 16 18 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 20 H -0.26 -11.72 6.52 99.48 0.65 -11.07 16 21 N -0.30 -12.99 12.41 -48.61 -0.60 -13.59 16 22 N -0.09 -3.43 12.01 37.02 0.44 -2.99 16 23 C 0.13 0.58 3.37 45.71 0.15 0.73 16 24 C -0.15 -0.59 5.85 31.70 0.19 -0.41 16 25 C -0.12 -0.31 6.76 31.91 0.22 -0.09 16 26 C -0.15 -0.65 5.98 31.67 0.19 -0.46 16 27 C -0.15 -0.69 5.64 31.32 0.18 -0.51 16 28 H 0.04 0.92 6.35 -2.38 -0.02 0.91 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.13 0.52 7.57 -2.38 -0.02 0.50 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.04 0.96 6.11 -2.39 -0.01 0.94 16 35 H 0.15 2.16 4.71 -2.39 -0.01 2.15 16 36 H 0.17 1.81 3.51 -2.39 -0.01 1.80 16 37 H 0.24 4.17 8.06 -2.91 -0.02 4.14 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.36 18.00 5.52 -92.71 -0.51 17.49 16 41 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.13 -0.04 7.58 -2.39 -0.02 -0.05 16 43 H 0.06 0.43 5.39 -2.39 -0.01 0.42 16 44 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.09 0.04 8.14 -2.39 -0.02 0.03 16 46 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.06 0.41 5.25 -2.39 -0.01 0.40 16 49 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 50 H 0.06 0.51 5.49 -2.39 -0.01 0.49 16 Total: -1.00 -86.88 381.27 3.97 -82.92 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.39 Total: 18.46 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.42 Total: 3.84 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -4.71 Total: -137.70 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.04 Total: -16.98 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.90 Total: 49.47 kcal Total: -86.88 3.97 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603210541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.796 kcal (2) G-P(sol) polarization free energy of solvation -86.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds