Wall clock time and date at job start Tue Mar 31 2020 18:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 N 1.46896 * 109.46799 * 120.00319 * 2 1 3 5 5 C 1.46845 * 111.00384 * 297.82077 * 4 2 1 6 6 C 1.53033 * 109.52905 * 174.16497 * 5 4 2 7 7 C 1.53120 * 109.27934 * 59.17432 * 6 5 4 8 8 C 1.53120 * 109.16153 * 302.35047 * 7 6 5 9 9 C 1.46851 * 110.99769 * 173.60830 * 4 2 1 10 10 H 1.09003 * 109.46179 * 65.82642 * 9 4 2 11 11 C 1.52998 * 109.45632 * 305.84958 * 9 4 2 12 12 N 1.46494 * 109.47236 * 178.03756 * 11 9 4 13 13 C 1.35319 * 125.86523 * 124.55552 * 12 11 9 14 14 C 1.35355 * 106.17328 * 179.90517 * 13 12 11 15 15 C 1.50699 * 126.74871 * 180.12508 * 14 13 12 16 16 N 1.46505 * 109.46701 * 95.29910 * 15 14 13 17 17 C 1.34780 * 119.99574 * 179.97438 * 16 15 14 18 18 O 1.21690 * 120.00153 * 0.02562 * 17 16 15 19 19 C 1.46372 * 119.99663 * 180.02562 * 17 16 15 20 20 H 1.07998 * 119.99997 * 0.02562 * 19 17 16 21 21 C 1.40052 * 119.99957 * 180.02562 * 19 17 16 22 22 N 1.30668 * 119.99804 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00040 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47183 * 89.99941 * 23 21 19 25 25 H 1.48501 * 109.46960 * 210.00191 * 23 21 19 26 26 H 1.48504 * 109.47080 * 329.99526 * 23 21 19 27 27 N 1.33767 * 106.49421 * 0.35694 * 14 13 12 28 28 N 1.28631 * 108.89237 * 359.77057 * 27 14 13 29 29 H 1.09001 * 109.47121 * 59.99413 * 1 2 3 30 30 H 1.09001 * 109.47579 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47311 * 300.00052 * 1 2 3 32 32 H 1.09000 * 109.46624 * 240.00235 * 2 1 3 33 33 H 1.09000 * 109.47363 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47459 * 300.00380 * 3 2 1 35 35 H 1.09004 * 109.46674 * 60.00172 * 3 2 1 36 36 H 1.08996 * 109.46297 * 54.14202 * 5 4 2 37 37 H 1.09005 * 109.44882 * 294.17208 * 5 4 2 38 38 H 1.09001 * 109.49949 * 299.23801 * 6 5 4 39 39 H 1.08997 * 109.53684 * 179.13551 * 6 5 4 40 40 H 1.08996 * 109.52360 * 182.44140 * 7 6 5 41 41 H 1.09003 * 109.52204 * 62.25220 * 7 6 5 42 42 H 1.08997 * 109.50323 * 297.70988 * 8 7 6 43 43 H 1.08998 * 109.50447 * 177.59565 * 8 7 6 44 44 H 1.09003 * 109.47093 * 298.04169 * 11 9 4 45 45 H 1.09001 * 109.47185 * 58.03788 * 11 9 4 46 46 H 1.08000 * 126.91109 * 0.02562 * 13 12 11 47 47 H 1.09002 * 109.46871 * 215.29722 * 15 14 13 48 48 H 1.08998 * 109.47269 * 335.30321 * 15 14 13 49 49 H 0.96999 * 120.00057 * 0.02562 * 16 15 14 50 50 H 0.97006 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5918 0.0026 2.4201 6 6 1.9932 -0.8215 3.6455 7 6 3.5124 -1.0128 3.6505 8 6 3.9373 -1.6953 2.3473 9 6 3.4795 -0.8458 1.1595 10 1 3.9494 0.1364 1.2130 11 6 3.8842 -1.5341 -0.1456 12 7 5.3437 -1.6450 -0.2071 13 6 6.0452 -2.7886 -0.3836 14 6 7.3514 -2.4341 -0.3796 15 6 8.5353 -3.3518 -0.5447 16 7 8.9515 -3.3640 -1.9493 17 6 9.9987 -4.1198 -2.3352 18 8 10.5980 -4.7923 -1.5171 19 6 10.4149 -4.1315 -3.7385 20 1 9.8832 -3.5343 -4.4645 21 6 11.5026 -4.9172 -4.1397 22 7 12.1462 -5.6394 -3.2612 23 14 12.0343 -4.9317 -5.9304 24 1 13.0410 -3.8638 -6.1565 25 1 12.6303 -6.2515 -6.2591 26 1 10.8540 -4.6915 -6.7991 27 7 7.3849 -1.1096 -0.1952 28 7 6.1793 -0.6722 -0.0967 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.5092 0.1286 2.4058 37 1 2.0706 0.9807 2.4675 38 1 1.5040 -1.7947 3.6056 39 1 1.6894 -0.2982 4.5521 40 1 3.7983 -1.6358 4.4979 41 1 4.0016 -0.0420 3.7295 42 1 3.4787 -2.6822 2.2870 43 1 5.0224 -1.7957 2.3261 44 1 3.4422 -2.5298 -0.1834 45 1 3.5286 -0.9464 -0.9919 46 1 5.6434 -3.7837 -0.5054 47 1 9.3589 -2.9975 0.0753 48 1 8.2583 -4.3608 -0.2391 49 1 8.4740 -2.8276 -2.6013 50 1 12.8994 -6.1839 -3.5392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603252435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:36 Heat of formation + Delta-G solvation = 59.321783 kcal Electronic energy + Delta-G solvation = -29126.134507 eV Core-core repulsion = 25190.379005 eV Total energy + Delta-G solvation = -3935.755503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.20294 -40.31801 -37.24342 -35.70533 -35.18996 -33.54583 -32.31682 -31.65741 -30.68443 -30.65436 -27.69373 -27.52198 -26.90253 -25.00437 -24.80188 -23.11682 -21.74289 -21.05845 -20.83189 -19.63850 -19.29337 -17.67275 -17.23056 -16.82822 -16.21532 -15.39681 -15.33104 -15.11042 -14.85518 -14.79571 -14.47759 -14.35516 -14.08893 -13.94335 -13.63367 -13.47494 -13.28547 -13.04119 -12.71862 -12.57700 -12.29932 -12.22921 -12.09155 -11.82110 -11.60922 -11.56369 -11.34112 -11.18438 -11.11902 -11.10824 -10.92673 -10.83382 -10.67793 -10.55084 -10.41602 -10.19640 -9.90322 -9.15818 -8.81161 -8.78860 -7.56676 -7.46498 -6.14468 -4.59373 1.64950 2.21699 2.66164 3.17721 3.24288 3.27671 3.36930 3.99505 4.12721 4.15682 4.31376 4.47129 4.50105 4.56632 4.63310 4.67949 4.70117 4.73591 4.83165 4.89644 5.01752 5.03229 5.13200 5.18314 5.18862 5.22276 5.28040 5.32695 5.33123 5.42422 5.45640 5.53193 5.59512 5.64419 5.72565 5.75288 5.76388 5.82266 5.87355 5.98199 6.15438 6.47058 6.50324 6.55324 6.58881 6.67445 7.47846 7.96538 8.11644 8.37499 8.64792 9.06779 9.57231 10.63969 10.82406 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002067 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.535732 B =13544.286598 C =14278.724547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.191 4.191 4 N -0.523 5.523 5 C 0.053 3.947 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.112 4.112 9 C 0.074 3.926 10 H 0.065 0.935 11 C 0.119 3.881 12 N -0.293 5.293 13 C -0.037 4.037 14 C -0.018 4.018 15 C 0.217 3.783 16 N -0.761 5.761 17 C 0.557 3.443 18 O -0.581 6.581 19 C -0.543 4.543 20 H 0.067 0.933 21 C 0.087 3.913 22 N -0.768 5.768 23 Si 0.908 3.092 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.266 1.266 27 N -0.254 5.254 28 N -0.092 5.092 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.190 0.810 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.381 0.619 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.317 10.538 9.887 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 C -0.250 4.250 4 N -0.248 5.248 5 C -0.075 4.075 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.150 4.150 9 C -0.035 4.035 10 H 0.082 0.918 11 C -0.003 4.003 12 N -0.087 5.087 13 C -0.188 4.188 14 C -0.156 4.156 15 C 0.090 3.910 16 N -0.418 5.418 17 C 0.361 3.639 18 O -0.463 6.463 19 C -0.580 4.580 20 H 0.085 0.915 21 C -0.132 4.132 22 N -0.397 5.397 23 Si 0.733 3.267 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.190 1.190 27 N -0.121 5.121 28 N -0.071 5.071 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.117 0.883 46 H 0.207 0.793 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.212 0.788 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.788 10.948 10.771 30.878 hybrid contribution 0.052 -0.009 -1.411 1.412 sum -26.736 10.939 9.360 30.365 Atomic orbital electron populations 1.21862 0.93850 1.02589 1.01837 1.21865 0.96194 0.92824 0.93322 1.22507 1.02011 0.97791 1.02670 1.62162 1.09664 1.50618 1.02336 1.22164 1.00748 0.95483 0.89098 1.21608 0.96044 1.01002 0.96856 1.21547 0.95913 1.00860 0.97435 1.21626 1.00796 0.99229 0.93381 1.21812 0.88623 0.99315 0.93734 0.91762 1.22182 0.73622 1.04736 0.99718 1.47203 1.08520 1.05855 1.47078 1.23461 0.92382 0.93414 1.09551 1.22339 0.94960 0.92332 1.05944 1.19047 0.90231 0.94433 0.87296 1.46155 1.36949 1.52449 1.06202 1.18209 0.77788 0.78259 0.89661 1.90602 1.55761 1.45382 1.54602 1.20861 1.15720 1.28975 0.92473 0.91481 1.25703 0.95289 0.93670 0.98560 1.70023 1.15504 1.19939 1.34217 0.86374 0.79308 0.77973 0.83091 1.19741 1.20485 1.18980 1.75123 1.11549 1.09995 1.15475 1.78250 0.94010 1.14801 1.20059 0.92094 0.91673 0.92471 0.89598 0.92079 0.91774 0.92160 0.90022 0.94301 0.90980 0.91471 0.91454 0.92140 0.90787 0.91519 0.86909 0.88302 0.79251 0.91485 0.91509 0.78796 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.03 37.16 0.34 -0.36 16 2 C 0.07 0.38 2.59 -67.72 -0.18 0.21 16 3 C -0.19 -1.20 8.49 37.16 0.32 -0.88 16 4 N -0.52 -3.40 4.47 -218.76 -0.98 -4.38 16 5 C 0.05 0.32 4.61 -3.84 -0.02 0.30 16 6 C -0.12 -0.71 6.09 -26.65 -0.16 -0.87 16 7 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 8 C -0.11 -0.94 5.22 -26.65 -0.14 -1.08 16 9 C 0.07 0.59 1.55 -67.72 -0.11 0.48 16 10 H 0.06 0.63 6.70 -51.93 -0.35 0.28 16 11 C 0.12 0.96 5.54 -4.05 -0.02 0.94 16 12 N -0.29 -3.51 2.77 -61.26 -0.17 -3.68 16 13 C -0.04 -0.48 11.50 -17.04 -0.20 -0.68 16 14 C -0.02 -0.30 6.62 -82.78 -0.55 -0.85 16 15 C 0.22 4.33 6.23 -5.19 -0.03 4.30 16 16 N -0.76 -17.67 5.54 -62.90 -0.35 -18.02 16 17 C 0.56 16.10 7.75 -12.99 -0.10 16.00 16 18 O -0.58 -18.96 15.02 5.20 0.08 -18.88 16 19 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 20 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 21 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 22 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 23 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 N -0.25 -4.60 12.41 33.29 0.41 -4.18 16 28 N -0.09 -1.42 12.88 60.35 0.78 -0.64 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.26 6.33 -51.93 -0.33 -0.06 16 32 H 0.09 0.49 5.80 -51.93 -0.30 0.18 16 33 H 0.06 0.48 6.69 -51.93 -0.35 0.13 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.37 6.50 -51.93 -0.34 0.03 16 36 H 0.08 0.43 6.07 -51.93 -0.32 0.11 16 37 H 0.04 0.26 6.60 -51.93 -0.34 -0.08 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 44 H 0.11 0.70 8.07 -51.93 -0.42 0.29 16 45 H 0.10 0.72 6.07 -51.93 -0.32 0.41 16 46 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 48 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.38 8.14 8.44 -40.82 -0.34 7.79 16 50 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -35.76 392.66 -8.12 -43.87 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.00 Total: 4.29 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.44 Total: 2.91 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.35 Total: -53.50 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.08 Total: -18.88 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.76 -8.12 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603252435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.197 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds