Wall clock time and date at job start Tue Mar 31 2020 18:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 N 1.46896 * 109.46799 * 120.00319 * 2 1 3 5 5 C 1.46845 * 111.00384 * 297.82077 * 4 2 1 6 6 C 1.53033 * 109.52905 * 174.16497 * 5 4 2 7 7 C 1.53120 * 109.27934 * 59.17432 * 6 5 4 8 8 C 1.53120 * 109.16153 * 302.35047 * 7 6 5 9 9 C 1.46851 * 110.99769 * 173.60830 * 4 2 1 10 10 H 1.09003 * 109.46179 * 65.82642 * 9 4 2 11 11 C 1.52998 * 109.45632 * 305.84958 * 9 4 2 12 12 N 1.46494 * 109.47236 * 178.03756 * 11 9 4 13 13 C 1.35319 * 125.86523 * 124.55552 * 12 11 9 14 14 C 1.35355 * 106.17328 * 179.90517 * 13 12 11 15 15 C 1.50699 * 126.74871 * 180.12508 * 14 13 12 16 16 N 1.46505 * 109.46701 * 95.29910 * 15 14 13 17 17 C 1.34780 * 119.99574 * 179.97438 * 16 15 14 18 18 O 1.21690 * 120.00153 * 0.02562 * 17 16 15 19 19 C 1.46372 * 119.99663 * 180.02562 * 17 16 15 20 20 H 1.07998 * 119.99997 * 0.02562 * 19 17 16 21 21 C 1.40052 * 119.99957 * 180.02562 * 19 17 16 22 22 N 1.30668 * 119.99804 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00040 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47183 * 89.99941 * 23 21 19 25 25 H 1.48501 * 109.46960 * 210.00191 * 23 21 19 26 26 H 1.48504 * 109.47080 * 329.99526 * 23 21 19 27 27 N 1.33767 * 106.49421 * 0.35694 * 14 13 12 28 28 N 1.28631 * 108.89237 * 359.77057 * 27 14 13 29 29 H 1.09001 * 109.47121 * 59.99413 * 1 2 3 30 30 H 1.09001 * 109.47579 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47311 * 300.00052 * 1 2 3 32 32 H 1.09000 * 109.46624 * 240.00235 * 2 1 3 33 33 H 1.09000 * 109.47363 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47459 * 300.00380 * 3 2 1 35 35 H 1.09004 * 109.46674 * 60.00172 * 3 2 1 36 36 H 1.08996 * 109.46297 * 54.14202 * 5 4 2 37 37 H 1.09005 * 109.44882 * 294.17208 * 5 4 2 38 38 H 1.09001 * 109.49949 * 299.23801 * 6 5 4 39 39 H 1.08997 * 109.53684 * 179.13551 * 6 5 4 40 40 H 1.08996 * 109.52360 * 182.44140 * 7 6 5 41 41 H 1.09003 * 109.52204 * 62.25220 * 7 6 5 42 42 H 1.08997 * 109.50323 * 297.70988 * 8 7 6 43 43 H 1.08998 * 109.50447 * 177.59565 * 8 7 6 44 44 H 1.09003 * 109.47093 * 298.04169 * 11 9 4 45 45 H 1.09001 * 109.47185 * 58.03788 * 11 9 4 46 46 H 1.08000 * 126.91109 * 0.02562 * 13 12 11 47 47 H 1.09002 * 109.46871 * 215.29722 * 15 14 13 48 48 H 1.08998 * 109.47269 * 335.30321 * 15 14 13 49 49 H 0.96999 * 120.00057 * 0.02562 * 16 15 14 50 50 H 0.97006 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5918 0.0026 2.4201 6 6 1.9932 -0.8215 3.6455 7 6 3.5124 -1.0128 3.6505 8 6 3.9373 -1.6953 2.3473 9 6 3.4795 -0.8458 1.1595 10 1 3.9494 0.1364 1.2130 11 6 3.8842 -1.5341 -0.1456 12 7 5.3437 -1.6450 -0.2071 13 6 6.0452 -2.7886 -0.3836 14 6 7.3514 -2.4341 -0.3796 15 6 8.5353 -3.3518 -0.5447 16 7 8.9515 -3.3640 -1.9493 17 6 9.9987 -4.1198 -2.3352 18 8 10.5980 -4.7923 -1.5171 19 6 10.4149 -4.1315 -3.7385 20 1 9.8832 -3.5343 -4.4645 21 6 11.5026 -4.9172 -4.1397 22 7 12.1462 -5.6394 -3.2612 23 14 12.0343 -4.9317 -5.9304 24 1 13.0410 -3.8638 -6.1565 25 1 12.6303 -6.2515 -6.2591 26 1 10.8540 -4.6915 -6.7991 27 7 7.3849 -1.1096 -0.1952 28 7 6.1793 -0.6722 -0.0967 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.5092 0.1286 2.4058 37 1 2.0706 0.9807 2.4675 38 1 1.5040 -1.7947 3.6056 39 1 1.6894 -0.2982 4.5521 40 1 3.7983 -1.6358 4.4979 41 1 4.0016 -0.0420 3.7295 42 1 3.4787 -2.6822 2.2870 43 1 5.0224 -1.7957 2.3261 44 1 3.4422 -2.5298 -0.1834 45 1 3.5286 -0.9464 -0.9919 46 1 5.6434 -3.7837 -0.5054 47 1 9.3589 -2.9975 0.0753 48 1 8.2583 -4.3608 -0.2391 49 1 8.4740 -2.8276 -2.6013 50 1 12.8994 -6.1839 -3.5392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603252435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:35 Heat of formation + Delta-G solvation = 32.836285 kcal Electronic energy + Delta-G solvation = -29127.283005 eV Core-core repulsion = 25190.379005 eV Total energy + Delta-G solvation = -3936.904000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.35445 -40.90086 -39.35173 -36.50124 -36.02930 -35.25523 -34.45037 -32.46987 -32.19203 -31.19397 -29.01003 -28.17464 -28.10382 -26.78372 -25.35385 -23.93927 -22.90546 -22.01077 -21.60834 -21.52376 -19.96446 -19.33059 -18.35764 -17.78277 -17.40363 -17.05310 -16.25757 -16.12639 -15.98854 -15.73702 -15.65426 -15.35751 -15.28216 -15.01507 -14.62880 -14.50439 -14.16638 -14.11796 -13.77175 -13.44686 -13.42565 -13.29993 -13.08249 -12.84681 -12.73832 -12.66577 -12.64086 -12.56313 -12.31975 -12.09112 -11.99923 -11.91108 -11.71817 -11.65956 -11.55754 -11.22313 -10.91574 -10.84367 -10.43284 -9.79830 -9.49397 -9.34809 -8.27321 -6.83780 0.56425 1.29562 1.34884 1.42495 1.43605 1.58806 2.27622 2.48730 2.79214 3.14734 3.34263 3.40701 3.52698 3.64127 3.78499 3.86068 3.96915 3.98212 4.10038 4.12225 4.15652 4.18552 4.27688 4.36319 4.44834 4.47982 4.62149 4.66614 4.69402 4.74030 4.75315 4.80765 4.90500 4.96239 4.98200 5.03477 5.05782 5.08486 5.14969 5.18515 5.27994 5.33802 5.39272 5.43688 5.59935 5.88219 6.01847 6.08469 6.17542 6.27038 6.88369 7.45088 7.52389 8.49359 8.68545 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002067 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.535732 B =13544.286598 C =14278.724547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.064 3.936 3 C -0.187 4.187 4 N -0.516 5.516 5 C 0.051 3.949 6 C -0.112 4.112 7 C -0.121 4.121 8 C -0.110 4.110 9 C 0.082 3.918 10 H 0.042 0.958 11 C 0.112 3.888 12 N -0.276 5.276 13 C -0.008 4.008 14 C -0.044 4.044 15 C 0.225 3.775 16 N -0.749 5.749 17 C 0.541 3.459 18 O -0.629 6.629 19 C -0.572 4.572 20 H 0.085 0.915 21 C 0.029 3.971 22 N -0.820 5.820 23 Si 0.999 3.001 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.249 1.249 27 N -0.294 5.294 28 N -0.103 5.103 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.143 0.857 45 H 0.112 0.888 46 H 0.230 0.770 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.391 0.609 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.203 10.454 8.307 33.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.246 4.246 4 N -0.241 5.241 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.148 4.148 9 C -0.027 4.027 10 H 0.060 0.940 11 C -0.008 4.008 12 N -0.069 5.069 13 C -0.160 4.160 14 C -0.182 4.182 15 C 0.099 3.901 16 N -0.403 5.403 17 C 0.346 3.654 18 O -0.517 6.517 19 C -0.608 4.608 20 H 0.103 0.897 21 C -0.187 4.187 22 N -0.449 5.449 23 Si 0.818 3.182 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.172 1.172 27 N -0.161 5.161 28 N -0.083 5.083 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.161 0.839 45 H 0.130 0.870 46 H 0.246 0.754 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.224 0.776 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -29.748 10.926 9.204 33.000 hybrid contribution 0.817 0.081 -0.818 1.159 sum -28.931 11.007 8.385 32.070 Atomic orbital electron populations 1.21825 0.92701 1.02795 1.02353 1.21949 0.97036 0.92286 0.93071 1.22471 1.00687 0.98449 1.03006 1.62221 1.08230 1.50799 1.02895 1.22220 1.01467 0.95019 0.88889 1.21578 0.94653 1.01325 0.97394 1.21547 0.97088 1.00103 0.97084 1.21580 0.99113 0.99949 0.94133 1.21647 0.89575 0.98042 0.93457 0.94048 1.22614 0.71109 1.06858 1.00255 1.47477 1.09712 1.04921 1.44820 1.23861 0.90909 0.94850 1.06362 1.21883 0.95374 0.91885 1.09099 1.18887 0.90840 0.95583 0.84824 1.45828 1.35525 1.51051 1.07926 1.18567 0.78571 0.78396 0.89907 1.90555 1.57713 1.47606 1.55785 1.21386 1.16707 1.29799 0.92936 0.89735 1.26966 0.94749 0.92449 1.04490 1.70182 1.16318 1.20932 1.37506 0.85011 0.79257 0.78419 0.75536 1.18899 1.19513 1.17236 1.75064 1.13187 1.10882 1.16983 1.78179 0.93716 1.15696 1.20688 0.91374 0.91562 0.92237 0.89097 0.93998 0.91142 0.92157 0.88615 0.95127 0.90621 0.90367 0.91266 0.93418 0.89786 0.94184 0.83900 0.86965 0.75360 0.94226 0.90838 0.77607 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.03 71.98 0.65 -0.31 16 2 C 0.06 0.60 2.59 44.92 0.12 0.72 16 3 C -0.19 -2.11 8.49 71.98 0.61 -1.50 16 4 N -0.52 -5.63 4.47 -846.04 -3.78 -9.41 16 5 C 0.05 0.53 4.61 86.32 0.40 0.93 16 6 C -0.11 -1.15 6.09 30.65 0.19 -0.97 16 7 C -0.12 -1.70 6.00 30.67 0.18 -1.52 16 8 C -0.11 -1.73 5.22 30.65 0.16 -1.57 16 9 C 0.08 1.19 1.55 44.94 0.07 1.26 16 10 H 0.04 0.81 6.70 -2.39 -0.02 0.80 16 11 C 0.11 1.52 5.54 86.38 0.48 2.00 16 12 N -0.28 -6.18 2.77 -347.74 -0.96 -7.14 16 13 C -0.01 -0.18 11.50 83.49 0.96 0.78 16 14 C -0.04 -1.48 6.62 41.60 0.28 -1.20 16 15 C 0.22 9.26 6.23 85.63 0.53 9.80 16 16 N -0.75 -35.43 5.54 -471.13 -2.61 -38.05 16 17 C 0.54 32.17 7.75 86.36 0.67 32.84 16 18 O -0.63 -42.78 15.02 -4.32 -0.06 -42.84 16 19 C -0.57 -33.10 9.54 24.83 0.24 -32.87 16 20 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 21 C 0.03 1.62 5.50 85.31 0.47 2.09 16 22 N -0.82 -50.72 11.83 21.84 0.26 -50.47 16 23 Si 1.00 41.53 29.56 68.60 2.03 43.56 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 27 N -0.29 -10.85 12.41 -48.60 -0.60 -11.45 16 28 N -0.10 -3.18 12.88 37.02 0.48 -2.71 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.39 6.33 -2.39 -0.02 0.37 16 32 H 0.09 0.77 5.80 -2.39 -0.01 0.75 16 33 H 0.04 0.64 6.69 -2.39 -0.02 0.62 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.67 6.50 -2.38 -0.02 0.66 16 36 H 0.10 0.75 6.07 -2.39 -0.01 0.74 16 37 H 0.03 0.38 6.60 -2.38 -0.02 0.36 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 0.85 7.69 -2.39 -0.02 0.83 16 44 H 0.14 1.18 8.07 -2.39 -0.02 1.16 16 45 H 0.11 1.33 6.07 -2.39 -0.01 1.31 16 46 H 0.23 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 49 H 0.39 16.78 8.44 -92.71 -0.78 16.00 16 50 H 0.28 15.36 8.29 -92.70 -0.77 14.59 16 Total: -1.00 -81.27 392.66 0.91 -80.36 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.17 Total: 27.67 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.00 Total: 10.48 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -7.22 Total: -119.22 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -0.06 Total: -42.84 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -81.27 0.91 -80.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603252435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.193 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds