Wall clock time and date at job start Tue Mar 31 2020 19:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46899 * 109.47010 * 240.00344 * 2 1 3 5 5 C 1.46895 * 111.00376 * 205.00215 * 4 2 1 6 6 H 1.09008 * 109.49664 * 324.99612 * 5 4 2 7 7 C 1.53041 * 109.49798 * 204.93479 * 5 4 2 8 8 C 1.53048 * 109.53709 * 178.67792 * 7 5 4 9 9 C 1.53192 * 109.31120 * 61.36372 * 8 7 5 10 10 N 1.46924 * 108.77615 * 305.36770 * 9 8 7 11 11 C 1.34781 * 120.62807 * 233.60782 * 10 9 8 12 12 O 1.21591 * 119.99670 * 174.77534 * 11 10 9 13 13 N 1.34774 * 120.00166 * 354.77337 * 11 10 9 14 14 C 1.40191 * 120.00208 * 185.12701 * 13 11 10 15 15 C 1.40401 * 125.97434 * 359.71117 * 14 13 11 16 16 C 1.35245 * 107.87039 * 179.82853 * 15 14 13 17 17 N 1.34964 * 107.85434 * 0.43359 * 16 15 14 18 18 C 1.46500 * 125.97535 * 179.74542 * 17 16 15 19 19 C 1.50699 * 109.47330 * 124.99988 * 18 17 16 20 20 H 1.08001 * 119.99992 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00036 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99730 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47523 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47209 * 120.00544 * 23 21 19 26 26 H 1.48499 * 109.47108 * 240.00036 * 23 21 19 27 27 N 1.31213 * 125.97277 * 180.02562 * 14 13 11 28 28 C 1.46931 * 118.76595 * 53.58562 * 10 9 8 29 29 H 1.09001 * 109.47145 * 59.99435 * 1 2 3 30 30 H 1.08991 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46700 * 299.99806 * 1 2 3 32 32 H 1.09001 * 109.47145 * 120.00565 * 2 1 3 33 33 H 1.09004 * 109.46759 * 60.00132 * 3 2 1 34 34 H 1.08994 * 109.46797 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46793 * 300.00539 * 3 2 1 36 36 H 1.00904 * 111.00354 * 81.04118 * 4 2 1 37 37 H 1.08990 * 109.45922 * 298.69917 * 7 5 4 38 38 H 1.09004 * 109.46165 * 58.67574 * 7 5 4 39 39 H 1.09000 * 109.49508 * 181.31763 * 8 7 5 40 40 H 1.09000 * 109.49756 * 301.41626 * 8 7 5 41 41 H 1.09010 * 109.58314 * 65.15250 * 9 8 7 42 42 H 1.08998 * 109.58717 * 185.43216 * 9 8 7 43 43 H 0.97010 * 119.99662 * 5.12553 * 13 11 10 44 44 H 1.08007 * 126.06051 * 0.02562 * 15 14 13 45 45 H 1.07997 * 126.07148 * 180.17827 * 16 15 14 46 46 H 1.09002 * 109.47363 * 245.00357 * 18 17 16 47 47 H 1.09004 * 109.46801 * 5.00269 * 18 17 16 48 48 H 0.96992 * 119.99966 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.61495 * 186.63997 * 28 10 9 50 50 H 1.08997 * 109.56299 * 66.21660 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.3669 -1.2355 -0.9808 6 1 3.9314 -0.5603 -0.3376 7 6 4.0842 -1.3789 -2.3251 8 6 5.4997 -1.9136 -2.0955 9 6 5.4190 -3.2961 -1.4405 10 7 4.6068 -3.1947 -0.2203 11 6 5.0864 -3.6294 0.9618 12 8 4.4448 -3.4541 1.9797 13 7 6.2771 -4.2585 1.0158 14 6 6.7268 -4.8055 2.2257 15 6 6.0452 -4.7659 3.4525 16 6 6.8057 -5.4045 4.3706 17 7 7.9310 -5.8251 3.7555 18 6 9.0329 -6.5578 4.3840 19 6 9.2853 -7.8345 3.6242 20 1 8.6852 -8.0758 2.7593 21 6 10.2831 -8.6941 4.0326 22 7 11.0141 -8.4001 5.0855 23 14 10.5963 -10.2762 3.0902 24 1 9.6455 -10.3720 1.9536 25 1 11.9880 -10.2765 2.5722 26 1 10.4049 -11.4377 3.9955 27 7 7.8609 -5.4389 2.4109 28 6 3.2621 -2.6099 -0.3126 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.0019 -0.0815 -2.0023 37 1 3.5323 -2.0729 -2.9589 38 1 4.1386 -0.4059 -2.8134 39 1 6.0179 -1.9934 -3.0511 40 1 6.0442 -1.2325 -1.4415 41 1 4.9550 -4.0009 -2.1307 42 1 6.4219 -3.6395 -1.1870 43 1 6.8230 -4.3328 0.2173 44 1 5.0826 -4.3095 3.6306 45 1 6.5585 -5.5484 5.4120 46 1 9.9328 -5.9429 4.3703 47 1 8.7703 -6.7946 5.4151 48 1 11.7162 -9.0046 5.3725 49 1 2.8418 -2.4991 0.6871 50 1 2.6221 -3.2589 -0.9103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610326055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:02 Heat of formation + Delta-G solvation = 57.194048 kcal Electronic energy + Delta-G solvation = -28955.126684 eV Core-core repulsion = 25019.278916 eV Total energy + Delta-G solvation = -3935.847768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91644 -40.02368 -38.51901 -36.59615 -34.79161 -33.51809 -33.00100 -31.81175 -30.83111 -29.27175 -28.33513 -27.47915 -26.73283 -25.63494 -23.16242 -23.02542 -21.74492 -20.90178 -20.65339 -20.03751 -19.12179 -18.05151 -16.65627 -16.52867 -16.35007 -15.67027 -15.56594 -15.51043 -15.06509 -14.73151 -14.51619 -14.25579 -13.98648 -13.88084 -13.66348 -13.52118 -13.23506 -12.90768 -12.74893 -12.63801 -12.39766 -12.27123 -12.13441 -11.86327 -11.74000 -11.61971 -11.37308 -11.28302 -11.08310 -11.02362 -10.86280 -10.73941 -10.40117 -10.24594 -10.03474 -9.62441 -9.45731 -9.00052 -8.68287 -8.61805 -8.06604 -7.37690 -6.22888 -4.27650 2.32960 2.68450 3.11758 3.23027 3.30501 3.35714 3.40941 3.74825 3.86063 4.10104 4.33285 4.36088 4.48295 4.53968 4.60567 4.70468 4.82393 4.96349 4.99194 5.09135 5.12317 5.20466 5.26930 5.41236 5.42859 5.45119 5.50206 5.52312 5.56431 5.60083 5.66320 5.77815 5.78502 5.84754 5.89242 5.99898 6.15598 6.36033 6.57314 6.64144 6.73213 6.86738 7.00057 7.01892 7.11273 7.52419 7.71336 7.82121 7.96800 8.09522 8.59888 8.69233 8.83250 9.37857 10.85829 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002124 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.942708 B =13181.848649 C =13901.435036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 C -0.182 4.182 4 N -0.678 5.678 5 C 0.072 3.928 6 H 0.051 0.949 7 C -0.120 4.120 8 C -0.132 4.132 9 C 0.107 3.893 10 N -0.627 5.627 11 C 0.718 3.282 12 O -0.566 6.566 13 N -0.644 5.644 14 C 0.275 3.725 15 C -0.286 4.286 16 C 0.051 3.949 17 N -0.321 5.321 18 C 0.258 3.742 19 C -0.526 4.526 20 H 0.069 0.931 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.308 5.308 28 C 0.143 3.857 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.343 0.657 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.405 0.595 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.044 0.956 47 H 0.057 0.943 48 H 0.266 0.734 49 H 0.093 0.907 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 17.793 -14.847 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.241 4.241 4 N -0.310 5.310 5 C -0.038 4.038 6 H 0.069 0.931 7 C -0.158 4.158 8 C -0.171 4.171 9 C -0.016 4.016 10 N -0.366 5.366 11 C 0.418 3.582 12 O -0.441 6.441 13 N -0.296 5.296 14 C 0.021 3.979 15 C -0.317 4.317 16 C -0.099 4.099 17 N -0.103 5.103 18 C 0.141 3.859 19 C -0.565 4.565 20 H 0.087 0.913 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.140 5.140 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.242 0.758 44 H 0.177 0.823 45 H 0.185 0.815 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.429 16.764 -14.316 27.494 hybrid contribution 0.527 0.225 -0.527 0.778 sum -15.902 16.989 -14.843 27.601 Atomic orbital electron populations 1.21750 0.94188 1.02419 1.01277 1.21655 0.95950 0.92384 0.93544 1.22500 1.01249 0.97903 1.02410 1.60474 1.23682 1.40835 1.05996 1.21874 0.88894 0.96362 0.96718 0.93132 1.21696 0.95721 1.01717 0.96645 1.21903 0.97114 0.96726 1.01400 1.21693 0.95568 0.97571 0.86796 1.47178 1.17637 1.65440 1.06321 1.15505 0.80670 0.78439 0.83547 1.90851 1.59419 1.61651 1.32214 1.41594 1.19791 1.58038 1.10182 1.18802 0.94182 0.98679 0.86192 1.21496 1.05038 1.14349 0.90858 1.22545 0.88646 0.99199 0.99509 1.49044 1.16232 1.40759 1.04229 1.19733 0.82234 0.91051 0.92899 1.21305 1.18075 1.03370 1.13725 0.91254 1.24954 0.95296 0.98743 0.95195 1.69927 1.21228 1.37646 1.24595 0.86275 0.78197 0.82237 0.79804 1.19575 1.20729 1.20779 1.77314 1.17985 1.21090 0.97565 1.21390 0.81520 0.92516 1.02606 0.92881 0.91853 0.92500 0.90033 0.91903 0.92846 0.92541 0.83823 0.90652 0.91772 0.90133 0.91307 0.90768 0.90213 0.75766 0.82266 0.81542 0.93776 0.92551 0.92411 0.88836 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.52 37.16 0.35 -0.54 16 2 C 0.07 0.53 3.01 -67.71 -0.20 0.33 16 3 C -0.18 -1.14 9.15 37.16 0.34 -0.80 16 4 N -0.68 -4.65 6.06 -99.61 -0.60 -5.26 16 5 C 0.07 0.56 2.45 -67.60 -0.17 0.40 16 6 H 0.05 0.47 7.12 -51.92 -0.37 0.10 16 7 C -0.12 -0.72 5.17 -26.69 -0.14 -0.86 16 8 C -0.13 -0.84 6.08 -26.61 -0.16 -1.00 16 9 C 0.11 0.86 6.38 -3.71 -0.02 0.84 16 10 N -0.63 -7.10 2.97 -178.49 -0.53 -7.63 16 11 C 0.72 11.22 8.26 -86.92 -0.72 10.51 16 12 O -0.57 -10.58 12.91 5.29 0.07 -10.51 16 13 N -0.64 -10.56 5.36 -15.51 -0.08 -10.64 16 14 C 0.28 5.71 8.11 -154.36 -1.25 4.46 16 15 C -0.29 -5.87 9.61 -39.83 -0.38 -6.25 16 16 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 17 N -0.32 -7.58 3.67 -62.56 -0.23 -7.81 16 18 C 0.26 6.63 6.26 -5.19 -0.03 6.60 16 19 C -0.53 -14.75 9.24 -34.44 -0.32 -15.06 16 20 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 23 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 N -0.31 -7.23 12.42 31.44 0.39 -6.84 16 28 C 0.14 1.46 5.90 -3.71 -0.02 1.44 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.72 7.18 -51.93 -0.37 0.35 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.37 7.43 -51.93 -0.39 -0.01 16 35 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 36 H 0.34 1.92 8.07 -39.29 -0.32 1.61 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.32 8.10 -51.93 -0.42 -0.10 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.08 0.62 5.65 -51.93 -0.29 0.33 16 43 H 0.40 5.52 6.32 -40.82 -0.26 5.26 16 44 H 0.16 3.22 5.93 -52.48 -0.31 2.91 16 45 H 0.17 2.79 8.06 -52.49 -0.42 2.36 16 46 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -32.50 397.53 -10.40 -42.90 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.10 Total: 5.60 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.02 Total: 2.48 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.32 Total: -62.90 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.50 -10.40 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.091 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds