Wall clock time and date at job start Tue Mar 31 2020 19:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46899 * 109.47010 * 240.00344 * 2 1 3 5 5 C 1.46895 * 111.00376 * 205.00215 * 4 2 1 6 6 H 1.09008 * 109.49664 * 324.99612 * 5 4 2 7 7 C 1.53041 * 109.49798 * 204.93479 * 5 4 2 8 8 C 1.53048 * 109.53709 * 178.67792 * 7 5 4 9 9 C 1.53192 * 109.31120 * 61.36372 * 8 7 5 10 10 N 1.46924 * 108.77615 * 305.36770 * 9 8 7 11 11 C 1.34781 * 120.62807 * 233.60782 * 10 9 8 12 12 O 1.21591 * 119.99670 * 174.77534 * 11 10 9 13 13 N 1.34774 * 120.00166 * 354.77337 * 11 10 9 14 14 C 1.40191 * 120.00208 * 185.12701 * 13 11 10 15 15 C 1.40401 * 125.97434 * 359.71117 * 14 13 11 16 16 C 1.35245 * 107.87039 * 179.82853 * 15 14 13 17 17 N 1.34964 * 107.85434 * 0.43359 * 16 15 14 18 18 C 1.46500 * 125.97535 * 179.74542 * 17 16 15 19 19 C 1.50699 * 109.47330 * 124.99988 * 18 17 16 20 20 H 1.08001 * 119.99992 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00036 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99730 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47523 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47209 * 120.00544 * 23 21 19 26 26 H 1.48499 * 109.47108 * 240.00036 * 23 21 19 27 27 N 1.31213 * 125.97277 * 180.02562 * 14 13 11 28 28 C 1.46931 * 118.76595 * 53.58562 * 10 9 8 29 29 H 1.09001 * 109.47145 * 59.99435 * 1 2 3 30 30 H 1.08991 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46700 * 299.99806 * 1 2 3 32 32 H 1.09001 * 109.47145 * 120.00565 * 2 1 3 33 33 H 1.09004 * 109.46759 * 60.00132 * 3 2 1 34 34 H 1.08994 * 109.46797 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46793 * 300.00539 * 3 2 1 36 36 H 1.00904 * 111.00354 * 81.04118 * 4 2 1 37 37 H 1.08990 * 109.45922 * 298.69917 * 7 5 4 38 38 H 1.09004 * 109.46165 * 58.67574 * 7 5 4 39 39 H 1.09000 * 109.49508 * 181.31763 * 8 7 5 40 40 H 1.09000 * 109.49756 * 301.41626 * 8 7 5 41 41 H 1.09010 * 109.58314 * 65.15250 * 9 8 7 42 42 H 1.08998 * 109.58717 * 185.43216 * 9 8 7 43 43 H 0.97010 * 119.99662 * 5.12553 * 13 11 10 44 44 H 1.08007 * 126.06051 * 0.02562 * 15 14 13 45 45 H 1.07997 * 126.07148 * 180.17827 * 16 15 14 46 46 H 1.09002 * 109.47363 * 245.00357 * 18 17 16 47 47 H 1.09004 * 109.46801 * 5.00269 * 18 17 16 48 48 H 0.96992 * 119.99966 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.61495 * 186.63997 * 28 10 9 50 50 H 1.08997 * 109.56299 * 66.21660 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.3669 -1.2355 -0.9808 6 1 3.9314 -0.5603 -0.3376 7 6 4.0842 -1.3789 -2.3251 8 6 5.4997 -1.9136 -2.0955 9 6 5.4190 -3.2961 -1.4405 10 7 4.6068 -3.1947 -0.2203 11 6 5.0864 -3.6294 0.9618 12 8 4.4448 -3.4541 1.9797 13 7 6.2771 -4.2585 1.0158 14 6 6.7268 -4.8055 2.2257 15 6 6.0452 -4.7659 3.4525 16 6 6.8057 -5.4045 4.3706 17 7 7.9310 -5.8251 3.7555 18 6 9.0329 -6.5578 4.3840 19 6 9.2853 -7.8345 3.6242 20 1 8.6852 -8.0758 2.7593 21 6 10.2831 -8.6941 4.0326 22 7 11.0141 -8.4001 5.0855 23 14 10.5963 -10.2762 3.0902 24 1 9.6455 -10.3720 1.9536 25 1 11.9880 -10.2765 2.5722 26 1 10.4049 -11.4377 3.9955 27 7 7.8609 -5.4389 2.4109 28 6 3.2621 -2.6099 -0.3126 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.0019 -0.0815 -2.0023 37 1 3.5323 -2.0729 -2.9589 38 1 4.1386 -0.4059 -2.8134 39 1 6.0179 -1.9934 -3.0511 40 1 6.0442 -1.2325 -1.4415 41 1 4.9550 -4.0009 -2.1307 42 1 6.4219 -3.6395 -1.1870 43 1 6.8230 -4.3328 0.2173 44 1 5.0826 -4.3095 3.6306 45 1 6.5585 -5.5484 5.4120 46 1 9.9328 -5.9429 4.3703 47 1 8.7703 -6.7946 5.4151 48 1 11.7162 -9.0046 5.3725 49 1 2.8418 -2.4991 0.6871 50 1 2.6221 -3.2589 -0.9103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610326055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:01 Heat of formation + Delta-G solvation = 36.664040 kcal Electronic energy + Delta-G solvation = -28956.016932 eV Core-core repulsion = 25019.278916 eV Total energy + Delta-G solvation = -3936.738016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31986 -41.32783 -39.40813 -37.36044 -36.29949 -35.31664 -34.02141 -32.64460 -32.42850 -30.94809 -29.15169 -28.46457 -27.99918 -26.63549 -24.92494 -23.76660 -23.00254 -22.10801 -21.47557 -21.28119 -20.32187 -19.18659 -18.68500 -18.10441 -17.34732 -16.96831 -16.68088 -16.28981 -16.12870 -15.97748 -15.65731 -15.56987 -15.37027 -14.68108 -14.57232 -14.32870 -14.26447 -14.14809 -14.06174 -13.79610 -13.64114 -13.47640 -13.13928 -12.94893 -12.87677 -12.72553 -12.50451 -12.30638 -12.18179 -12.10162 -11.93127 -11.87735 -11.66365 -11.64044 -11.39485 -11.37553 -11.06020 -10.72170 -9.91843 -9.71112 -9.37420 -9.03806 -8.32649 -6.46702 1.05329 1.08572 1.37524 1.38759 1.52068 1.66659 2.00582 2.35403 2.36194 2.78285 2.98829 3.16869 3.71382 3.87190 3.93068 3.97648 4.02801 4.07059 4.24575 4.25691 4.30870 4.39104 4.50310 4.57009 4.67732 4.75162 4.79643 4.86350 4.88256 4.90811 4.93663 4.95337 4.97964 5.01433 5.03334 5.08618 5.13312 5.16550 5.25776 5.35360 5.45208 5.50294 5.56838 5.70468 5.84240 5.94853 6.08383 6.28754 6.52911 6.58172 6.67491 7.09253 7.23174 7.35133 8.75065 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002124 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.942708 B =13181.848649 C =13901.435036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 C -0.176 4.176 4 N -0.675 5.675 5 C 0.082 3.918 6 H 0.033 0.967 7 C -0.114 4.114 8 C -0.127 4.127 9 C 0.098 3.902 10 N -0.616 5.616 11 C 0.712 3.288 12 O -0.601 6.601 13 N -0.637 5.637 14 C 0.284 3.716 15 C -0.294 4.294 16 C 0.058 3.942 17 N -0.344 5.344 18 C 0.272 3.728 19 C -0.546 4.546 20 H 0.052 0.948 21 C 0.017 3.983 22 N -0.921 5.921 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.270 1.270 27 N -0.346 5.346 28 C 0.143 3.857 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.354 0.646 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.417 0.583 44 H 0.164 0.836 45 H 0.202 0.798 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.272 0.728 49 H 0.066 0.934 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 18.105 -17.110 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.036 4.036 3 C -0.235 4.235 4 N -0.308 5.308 5 C -0.029 4.029 6 H 0.051 0.949 7 C -0.151 4.151 8 C -0.165 4.165 9 C -0.024 4.024 10 N -0.353 5.353 11 C 0.413 3.587 12 O -0.479 6.479 13 N -0.291 5.291 14 C 0.028 3.972 15 C -0.325 4.325 16 C -0.091 4.091 17 N -0.126 5.126 18 C 0.154 3.846 19 C -0.584 4.584 20 H 0.070 0.930 21 C -0.183 4.183 22 N -0.560 5.560 23 Si 0.797 3.203 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.178 5.178 28 C 0.019 3.981 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.257 0.743 44 H 0.181 0.819 45 H 0.218 0.782 46 H 0.040 0.960 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.228 17.113 -16.641 29.438 hybrid contribution 0.658 0.224 0.134 0.708 sum -16.570 17.337 -16.506 29.114 Atomic orbital electron populations 1.21706 0.93465 1.01995 1.02021 1.21611 0.96465 0.92723 0.92773 1.22436 1.00619 0.97275 1.03138 1.60415 1.22969 1.41187 1.06269 1.21713 0.89414 0.94359 0.97454 0.94905 1.21679 0.95150 1.02966 0.95348 1.21888 0.97512 0.95026 1.02119 1.22032 0.95261 0.99501 0.85611 1.47260 1.18124 1.63940 1.05965 1.15711 0.80151 0.78394 0.84445 1.90817 1.60175 1.62997 1.33946 1.41592 1.20337 1.57807 1.09363 1.19092 0.93227 0.97164 0.87688 1.21654 1.05230 1.14583 0.91021 1.23139 0.87263 0.97653 1.01032 1.48826 1.16830 1.42200 1.04761 1.19349 0.82292 0.90081 0.92911 1.21423 1.18539 1.04727 1.13687 0.92974 1.25757 0.94779 1.01808 0.95990 1.70001 1.21542 1.38871 1.25539 0.85279 0.78135 0.78425 0.78438 1.19911 1.19800 1.19540 1.77236 1.19593 1.23020 0.97904 1.21471 0.80804 0.94210 1.01574 0.91786 0.92838 0.92101 0.92471 0.91880 0.93714 0.91100 0.82522 0.89695 0.90026 0.87545 0.92467 0.88779 0.90080 0.74272 0.81860 0.78157 0.96033 0.92333 0.91848 0.91558 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.52 71.98 0.69 -0.92 16 2 C 0.07 1.02 3.01 44.92 0.14 1.16 16 3 C -0.18 -2.03 9.15 71.98 0.66 -1.37 16 4 N -0.68 -8.34 6.06 -469.07 -2.84 -11.18 16 5 C 0.08 1.18 2.45 44.99 0.11 1.29 16 6 H 0.03 0.60 7.12 -2.38 -0.02 0.59 16 7 C -0.11 -1.04 5.17 30.62 0.16 -0.88 16 8 C -0.13 -1.27 6.08 30.67 0.19 -1.08 16 9 C 0.10 1.38 6.38 86.36 0.55 1.93 16 10 N -0.62 -13.52 2.97 -836.89 -2.49 -16.01 16 11 C 0.71 22.38 8.26 179.05 1.48 23.85 16 12 O -0.60 -22.99 12.91 -4.00 -0.05 -23.05 16 13 N -0.64 -20.90 5.36 -321.23 -1.72 -22.62 16 14 C 0.28 11.90 8.11 133.31 1.08 12.98 16 15 C -0.29 -12.13 9.61 22.11 0.21 -11.92 16 16 C 0.06 2.36 11.44 83.52 0.96 3.32 16 17 N -0.34 -16.58 3.67 -351.84 -1.29 -17.87 16 18 C 0.27 14.34 6.26 85.63 0.54 14.88 16 19 C -0.55 -31.10 9.24 25.60 0.24 -30.87 16 20 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 21 C 0.02 0.94 5.46 84.66 0.46 1.40 16 22 N -0.92 -52.47 13.29 21.45 0.28 -52.18 16 23 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 N -0.35 -16.56 12.42 -54.44 -0.68 -17.23 16 28 C 0.14 2.85 5.90 86.36 0.51 3.36 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 1.07 7.18 -2.39 -0.02 1.06 16 33 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.04 0.59 7.43 -2.39 -0.02 0.58 16 35 H 0.07 0.62 8.13 -2.39 -0.02 0.60 16 36 H 0.35 3.11 8.07 -89.69 -0.72 2.39 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.53 8.10 -2.38 -0.02 0.51 16 39 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.08 1.13 5.65 -2.39 -0.01 1.12 16 43 H 0.42 11.21 6.32 -92.70 -0.59 10.62 16 44 H 0.16 6.66 5.93 -2.91 -0.02 6.65 16 45 H 0.20 6.51 8.06 -2.91 -0.02 6.48 16 46 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 3.01 8.07 -2.38 -0.02 2.99 16 48 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.07 1.71 6.38 -2.38 -0.02 1.69 16 50 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -71.35 397.53 0.84 -70.51 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.36 Total: 26.63 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.96 Total: 17.12 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -8.73 Total: -137.10 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -71.35 0.84 -70.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.171 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds