Wall clock time and date at job start Tue Mar 31 2020 19:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47059 * 2 1 4 4 N 1.46903 * 109.46988 * 119.99876 * 2 1 3 5 5 C 1.46899 * 110.99937 * 155.00293 * 4 2 1 6 6 H 1.09001 * 109.50133 * 34.92968 * 5 4 2 7 7 C 1.53042 * 109.49860 * 155.00203 * 5 4 2 8 8 C 1.53044 * 109.53696 * 181.31462 * 7 5 4 9 9 C 1.53189 * 109.31187 * 298.63346 * 8 7 5 10 10 N 1.46924 * 108.77781 * 54.63446 * 9 8 7 11 11 C 1.34781 * 120.62909 * 126.36752 * 10 9 8 12 12 O 1.21591 * 119.99959 * 185.22774 * 11 10 9 13 13 N 1.34773 * 120.00176 * 5.22833 * 11 10 9 14 14 C 1.40193 * 120.00055 * 174.86908 * 13 11 10 15 15 C 1.40401 * 125.97430 * 359.97438 * 14 13 11 16 16 C 1.35241 * 107.87052 * 179.71593 * 15 14 13 17 17 N 1.34971 * 107.85648 * 0.42325 * 16 15 14 18 18 C 1.46493 * 125.97393 * 179.83618 * 17 16 15 19 19 C 1.50703 * 109.47161 * 124.72195 * 18 17 16 20 20 H 1.08005 * 119.99759 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00347 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99600 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47211 * 60.00408 * 23 21 19 25 25 H 1.48504 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47162 * 300.00043 * 23 21 19 27 27 N 1.31211 * 125.97087 * 179.97438 * 14 13 11 28 28 C 1.46919 * 118.73942 * 306.64670 * 10 9 8 29 29 H 1.08999 * 109.47019 * 299.99755 * 1 2 3 30 30 H 1.08998 * 109.47111 * 59.99836 * 1 2 3 31 31 H 1.09001 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47391 * 239.99985 * 2 1 3 33 33 H 1.09002 * 109.47249 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47293 * 300.00053 * 3 2 1 35 35 H 1.09000 * 109.47529 * 60.00242 * 3 2 1 36 36 H 1.00900 * 110.99946 * 278.95472 * 4 2 1 37 37 H 1.09001 * 109.45969 * 61.29548 * 7 5 4 38 38 H 1.08995 * 109.44729 * 301.32604 * 7 5 4 39 39 H 1.08998 * 109.49823 * 178.68101 * 8 7 5 40 40 H 1.08999 * 109.52220 * 58.60294 * 8 7 5 41 41 H 1.09001 * 109.58766 * 294.84581 * 9 8 7 42 42 H 1.08999 * 109.58677 * 174.42534 * 9 8 7 43 43 H 0.97004 * 119.99936 * 354.86824 * 13 11 10 44 44 H 1.08004 * 126.06564 * 359.94594 * 15 14 13 45 45 H 1.08003 * 126.07654 * 180.26380 * 16 15 14 46 46 H 1.09008 * 109.47305 * 244.71393 * 18 17 16 47 47 H 1.09001 * 109.47759 * 4.71604 * 18 17 16 48 48 H 0.96998 * 119.99693 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.58877 * 173.14634 * 28 10 9 50 50 H 1.09004 * 109.58522 * 293.56439 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3670 -1.2354 0.9808 6 1 3.9310 -0.5608 0.3365 7 6 4.0849 -1.3774 2.3249 8 6 5.5004 -1.9122 2.0951 9 6 5.4195 -3.2953 1.4416 10 7 4.6069 -3.1952 0.2217 11 6 5.0862 -3.6307 -0.9604 12 8 4.4441 -3.4565 -1.9781 13 7 6.2772 -4.2592 -1.0143 14 6 6.7266 -4.8070 -2.2240 15 6 6.0416 -4.7742 -3.4491 16 6 6.8076 -5.4023 -4.3698 17 7 7.9310 -5.8267 -3.7536 18 6 9.0333 -6.5586 -4.3823 19 6 10.3254 -5.8193 -4.1479 20 1 10.3254 -4.8963 -3.5871 21 6 11.5077 -6.3212 -4.6495 22 7 11.5077 -7.4454 -5.3320 23 14 13.1091 -5.4044 -4.3595 24 1 13.3578 -5.2919 -2.8998 25 1 14.2266 -6.1463 -4.9967 26 1 13.0161 -4.0459 -4.9519 27 7 7.8609 -5.4400 -2.4091 28 6 3.2643 -2.6058 0.3136 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.0019 -0.0815 2.0023 37 1 3.5333 -2.0709 2.9597 38 1 4.1391 -0.4039 2.8120 39 1 6.0191 -1.9909 3.0505 40 1 6.0450 -1.2317 1.4405 41 1 4.9561 -3.9994 2.1326 42 1 6.4222 -3.6377 1.1857 43 1 6.8235 -4.3325 -0.2160 44 1 5.0760 -4.3237 -3.6258 45 1 6.5627 -5.5421 -5.4124 46 1 9.1016 -7.5561 -3.9481 47 1 8.8507 -6.6405 -5.4538 48 1 12.3394 -7.7982 -5.6851 49 1 2.8452 -2.4934 -0.6864 50 1 2.6214 -3.2526 0.9108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610326056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:06 Heat of formation + Delta-G solvation = 57.366711 kcal Electronic energy + Delta-G solvation = -28980.081548 eV Core-core repulsion = 25044.241267 eV Total energy + Delta-G solvation = -3935.840281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92028 -40.02827 -38.52488 -36.59523 -34.79245 -33.51826 -32.99958 -31.81830 -30.83053 -29.27169 -28.34070 -27.47300 -26.73055 -25.63938 -23.16135 -23.02348 -21.74783 -20.89732 -20.65127 -20.03309 -19.12079 -18.05243 -16.64799 -16.54045 -16.33752 -15.70416 -15.56167 -15.48195 -15.03916 -14.76279 -14.53020 -14.21718 -14.07910 -13.80847 -13.65671 -13.51294 -13.25231 -12.90655 -12.73724 -12.63152 -12.38355 -12.26281 -12.13928 -11.87651 -11.74499 -11.61346 -11.37367 -11.27112 -11.06832 -11.03904 -10.85139 -10.73295 -10.41300 -10.23775 -10.02862 -9.64814 -9.47355 -9.00033 -8.68320 -8.60858 -8.06662 -7.37726 -6.22511 -4.27484 2.32755 2.68166 3.12248 3.26228 3.29375 3.33055 3.39979 3.75052 3.86022 4.10174 4.33302 4.36182 4.48690 4.54480 4.61093 4.71072 4.83024 4.96974 4.99921 5.09227 5.12461 5.20896 5.27492 5.41432 5.43351 5.45154 5.50500 5.52639 5.56818 5.60435 5.66885 5.78071 5.79113 5.84774 5.89560 6.00141 6.15665 6.36052 6.57298 6.64129 6.73367 6.86772 7.00095 7.02117 7.11468 7.52406 7.71006 7.82233 7.96843 8.09625 8.59888 8.69017 8.82699 9.37801 10.86077 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018948 B = 0.002169 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.386117 B =12903.184490 C =13379.042504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 C -0.182 4.182 4 N -0.678 5.678 5 C 0.072 3.928 6 H 0.051 0.949 7 C -0.120 4.120 8 C -0.133 4.133 9 C 0.107 3.893 10 N -0.627 5.627 11 C 0.718 3.282 12 O -0.566 6.566 13 N -0.644 5.644 14 C 0.275 3.725 15 C -0.286 4.286 16 C 0.051 3.949 17 N -0.321 5.321 18 C 0.259 3.741 19 C -0.528 4.528 20 H 0.068 0.932 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.308 5.308 28 C 0.143 3.857 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.343 0.657 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.405 0.595 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.045 0.955 47 H 0.057 0.943 48 H 0.267 0.733 49 H 0.093 0.907 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.962 13.850 15.851 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.241 4.241 4 N -0.310 5.310 5 C -0.039 4.039 6 H 0.069 0.931 7 C -0.158 4.158 8 C -0.172 4.172 9 C -0.016 4.016 10 N -0.366 5.366 11 C 0.418 3.582 12 O -0.441 6.441 13 N -0.296 5.296 14 C 0.021 3.979 15 C -0.317 4.317 16 C -0.099 4.099 17 N -0.103 5.103 18 C 0.142 3.858 19 C -0.566 4.566 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.139 5.139 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.242 0.758 44 H 0.177 0.823 45 H 0.185 0.815 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.469 12.742 15.333 27.176 hybrid contribution 1.183 1.537 0.203 1.950 sum -17.286 14.279 15.536 27.277 Atomic orbital electron populations 1.21749 0.94186 1.02403 1.01283 1.21654 0.95945 0.92401 0.93541 1.22500 1.01276 0.97890 1.02414 1.60481 1.23639 1.40834 1.06005 1.21794 0.88931 0.96425 0.96746 0.93139 1.21694 0.95707 1.01723 0.96633 1.21905 0.97116 0.96740 1.01438 1.21698 0.95531 0.97586 0.86793 1.47176 1.17730 1.65302 1.06357 1.15502 0.80684 0.78450 0.83527 1.90853 1.59422 1.61643 1.32195 1.41592 1.19745 1.58033 1.10233 1.18802 0.93803 0.99019 0.86233 1.21493 1.04963 1.14448 0.90836 1.22548 0.88455 0.99537 0.99349 1.49048 1.15736 1.41222 1.04266 1.19722 0.81884 0.91603 0.92639 1.21225 0.90764 1.09207 1.35435 0.91398 1.24948 0.99405 0.95080 0.94693 1.69911 1.28133 1.19667 1.35661 0.86385 0.81787 0.79618 0.78683 1.19968 1.21058 1.20074 1.77316 1.17232 1.21604 0.97798 1.21294 0.81596 0.92540 1.02614 0.92880 0.92495 0.91863 0.90032 0.92831 0.91894 0.92540 0.83817 0.90657 0.91765 0.90126 0.91278 0.90757 0.90221 0.75764 0.82272 0.81542 0.93755 0.92560 0.92298 0.88857 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.52 37.16 0.35 -0.54 16 2 C 0.07 0.54 3.01 -67.71 -0.20 0.33 16 3 C -0.18 -1.17 9.15 37.16 0.34 -0.83 16 4 N -0.68 -4.69 6.06 -99.85 -0.61 -5.29 16 5 C 0.07 0.57 2.44 -67.81 -0.17 0.40 16 6 H 0.05 0.48 7.12 -51.93 -0.37 0.11 16 7 C -0.12 -0.73 5.17 -26.69 -0.14 -0.87 16 8 C -0.13 -0.86 6.08 -26.61 -0.16 -1.02 16 9 C 0.11 0.86 6.39 -3.71 -0.02 0.84 16 10 N -0.63 -7.08 2.98 -178.76 -0.53 -7.62 16 11 C 0.72 11.22 8.26 -86.92 -0.72 10.51 16 12 O -0.57 -10.59 12.91 5.29 0.07 -10.52 16 13 N -0.64 -10.55 5.36 -15.51 -0.08 -10.64 16 14 C 0.28 5.71 8.11 -154.36 -1.25 4.45 16 15 C -0.29 -5.87 9.61 -39.84 -0.38 -6.25 16 16 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 17 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 18 C 0.26 6.65 6.26 -5.20 -0.03 6.62 16 19 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 20 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 23 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 N -0.31 -7.23 12.42 31.44 0.39 -6.83 16 28 C 0.14 1.45 5.87 -3.93 -0.02 1.43 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.73 7.17 -51.93 -0.37 0.36 16 33 H 0.05 0.39 7.43 -51.93 -0.39 0.00 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 36 H 0.34 1.95 8.07 -39.29 -0.32 1.63 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.33 8.10 -51.93 -0.42 -0.09 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.63 5.65 -51.93 -0.29 0.33 16 43 H 0.40 5.51 6.31 -40.82 -0.26 5.26 16 44 H 0.16 3.22 5.93 -52.48 -0.31 2.90 16 45 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 46 H 0.04 1.20 8.14 -51.92 -0.42 0.77 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.09 1.15 6.36 -51.93 -0.33 0.82 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -32.43 397.47 -10.40 -42.83 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.09 Total: 5.76 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.02 Total: 2.41 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.32 Total: -62.91 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.43 -10.40 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.200 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds