Wall clock time and date at job start Tue Mar 31 2020 19:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47059 * 2 1 4 4 N 1.46903 * 109.46988 * 119.99876 * 2 1 3 5 5 C 1.46899 * 110.99937 * 155.00293 * 4 2 1 6 6 H 1.09001 * 109.50133 * 34.92968 * 5 4 2 7 7 C 1.53042 * 109.49860 * 155.00203 * 5 4 2 8 8 C 1.53044 * 109.53696 * 181.31462 * 7 5 4 9 9 C 1.53189 * 109.31187 * 298.63346 * 8 7 5 10 10 N 1.46924 * 108.77781 * 54.63446 * 9 8 7 11 11 C 1.34781 * 120.62909 * 126.36752 * 10 9 8 12 12 O 1.21591 * 119.99959 * 185.22774 * 11 10 9 13 13 N 1.34773 * 120.00176 * 5.22833 * 11 10 9 14 14 C 1.40193 * 120.00055 * 174.86908 * 13 11 10 15 15 C 1.40401 * 125.97430 * 359.97438 * 14 13 11 16 16 C 1.35241 * 107.87052 * 179.71593 * 15 14 13 17 17 N 1.34971 * 107.85648 * 0.42325 * 16 15 14 18 18 C 1.46493 * 125.97393 * 179.83618 * 17 16 15 19 19 C 1.50703 * 109.47161 * 124.72195 * 18 17 16 20 20 H 1.08005 * 119.99759 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00347 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99600 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47211 * 60.00408 * 23 21 19 25 25 H 1.48504 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47162 * 300.00043 * 23 21 19 27 27 N 1.31211 * 125.97087 * 179.97438 * 14 13 11 28 28 C 1.46919 * 118.73942 * 306.64670 * 10 9 8 29 29 H 1.08999 * 109.47019 * 299.99755 * 1 2 3 30 30 H 1.08998 * 109.47111 * 59.99836 * 1 2 3 31 31 H 1.09001 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47391 * 239.99985 * 2 1 3 33 33 H 1.09002 * 109.47249 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47293 * 300.00053 * 3 2 1 35 35 H 1.09000 * 109.47529 * 60.00242 * 3 2 1 36 36 H 1.00900 * 110.99946 * 278.95472 * 4 2 1 37 37 H 1.09001 * 109.45969 * 61.29548 * 7 5 4 38 38 H 1.08995 * 109.44729 * 301.32604 * 7 5 4 39 39 H 1.08998 * 109.49823 * 178.68101 * 8 7 5 40 40 H 1.08999 * 109.52220 * 58.60294 * 8 7 5 41 41 H 1.09001 * 109.58766 * 294.84581 * 9 8 7 42 42 H 1.08999 * 109.58677 * 174.42534 * 9 8 7 43 43 H 0.97004 * 119.99936 * 354.86824 * 13 11 10 44 44 H 1.08004 * 126.06564 * 359.94594 * 15 14 13 45 45 H 1.08003 * 126.07654 * 180.26380 * 16 15 14 46 46 H 1.09008 * 109.47305 * 244.71393 * 18 17 16 47 47 H 1.09001 * 109.47759 * 4.71604 * 18 17 16 48 48 H 0.96998 * 119.99693 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.58877 * 173.14634 * 28 10 9 50 50 H 1.09004 * 109.58522 * 293.56439 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3670 -1.2354 0.9808 6 1 3.9310 -0.5608 0.3365 7 6 4.0849 -1.3774 2.3249 8 6 5.5004 -1.9122 2.0951 9 6 5.4195 -3.2953 1.4416 10 7 4.6069 -3.1952 0.2217 11 6 5.0862 -3.6307 -0.9604 12 8 4.4441 -3.4565 -1.9781 13 7 6.2772 -4.2592 -1.0143 14 6 6.7266 -4.8070 -2.2240 15 6 6.0416 -4.7742 -3.4491 16 6 6.8076 -5.4023 -4.3698 17 7 7.9310 -5.8267 -3.7536 18 6 9.0333 -6.5586 -4.3823 19 6 10.3254 -5.8193 -4.1479 20 1 10.3254 -4.8963 -3.5871 21 6 11.5077 -6.3212 -4.6495 22 7 11.5077 -7.4454 -5.3320 23 14 13.1091 -5.4044 -4.3595 24 1 13.3578 -5.2919 -2.8998 25 1 14.2266 -6.1463 -4.9967 26 1 13.0161 -4.0459 -4.9519 27 7 7.8609 -5.4400 -2.4091 28 6 3.2643 -2.6058 0.3136 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.0019 -0.0815 2.0023 37 1 3.5333 -2.0709 2.9597 38 1 4.1391 -0.4039 2.8120 39 1 6.0191 -1.9909 3.0505 40 1 6.0450 -1.2317 1.4405 41 1 4.9561 -3.9994 2.1326 42 1 6.4222 -3.6377 1.1857 43 1 6.8235 -4.3325 -0.2160 44 1 5.0760 -4.3237 -3.6258 45 1 6.5627 -5.5421 -5.4124 46 1 9.1016 -7.5561 -3.9481 47 1 8.8507 -6.6405 -5.4538 48 1 12.3394 -7.7982 -5.6851 49 1 2.8452 -2.4934 -0.6864 50 1 2.6214 -3.2526 0.9108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610326056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:05 Heat of formation + Delta-G solvation = 36.882917 kcal Electronic energy + Delta-G solvation = -28980.969792 eV Core-core repulsion = 25044.241267 eV Total energy + Delta-G solvation = -3936.728525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32073 -41.33329 -39.42138 -37.36389 -36.29957 -35.31616 -34.02507 -32.64599 -32.43830 -30.94774 -29.15805 -28.46362 -28.00267 -26.63880 -24.92504 -23.76852 -23.00756 -22.10929 -21.47788 -21.27951 -20.32029 -19.18829 -18.67830 -18.10309 -17.33196 -17.01080 -16.66499 -16.29511 -16.11275 -15.92313 -15.82899 -15.47081 -15.37359 -14.68664 -14.57860 -14.30268 -14.25318 -14.15808 -14.06087 -13.79588 -13.65452 -13.50665 -13.14250 -12.94036 -12.87585 -12.72871 -12.49878 -12.28710 -12.18374 -12.09669 -11.94476 -11.88564 -11.67340 -11.63682 -11.41352 -11.37795 -11.06026 -10.71700 -9.91984 -9.71136 -9.38028 -9.03826 -8.32294 -6.46544 1.03391 1.10486 1.38187 1.40197 1.49009 1.66513 2.00513 2.34949 2.36586 2.78267 2.99058 3.16475 3.71213 3.87167 3.92996 3.97724 4.02453 4.07055 4.24202 4.25709 4.31183 4.38811 4.50122 4.56926 4.67755 4.74936 4.79565 4.86087 4.88227 4.90436 4.93620 4.95135 4.97868 5.01343 5.03378 5.08442 5.13399 5.16585 5.25395 5.35125 5.45002 5.50297 5.56328 5.70448 5.84334 5.94875 6.07782 6.28700 6.52437 6.58024 6.67051 7.09262 7.23065 7.35199 8.74926 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018948 B = 0.002169 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.386117 B =12903.184490 C =13379.042504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 C -0.176 4.176 4 N -0.674 5.674 5 C 0.081 3.919 6 H 0.031 0.969 7 C -0.113 4.113 8 C -0.128 4.128 9 C 0.098 3.902 10 N -0.615 5.615 11 C 0.712 3.288 12 O -0.601 6.601 13 N -0.637 5.637 14 C 0.284 3.716 15 C -0.294 4.294 16 C 0.058 3.942 17 N -0.344 5.344 18 C 0.273 3.727 19 C -0.548 4.548 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.273 1.273 26 H -0.271 1.271 27 N -0.346 5.346 28 C 0.143 3.857 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.354 0.646 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.417 0.583 44 H 0.164 0.836 45 H 0.201 0.799 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.273 0.727 49 H 0.065 0.935 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.239 15.237 17.881 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.036 4.036 3 C -0.235 4.235 4 N -0.307 5.307 5 C -0.030 4.030 6 H 0.049 0.951 7 C -0.151 4.151 8 C -0.167 4.167 9 C -0.024 4.024 10 N -0.353 5.353 11 C 0.413 3.587 12 O -0.479 6.479 13 N -0.291 5.291 14 C 0.028 3.972 15 C -0.325 4.325 16 C -0.091 4.091 17 N -0.126 5.126 18 C 0.154 3.846 19 C -0.586 4.586 20 H 0.070 0.930 21 C -0.183 4.183 22 N -0.559 5.559 23 Si 0.796 3.204 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.196 1.196 27 N -0.177 5.177 28 C 0.020 3.980 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.257 0.743 44 H 0.181 0.819 45 H 0.218 0.782 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.773 14.153 17.431 29.267 hybrid contribution 1.122 1.139 -0.368 1.641 sum -17.651 15.292 17.063 28.923 Atomic orbital electron populations 1.21705 0.93400 1.02031 1.02023 1.21610 0.96507 0.92682 0.92780 1.22438 1.00587 0.97336 1.03145 1.60426 1.22887 1.41164 1.06256 1.21639 0.89449 0.94469 0.97476 0.95087 1.21676 0.95113 1.02970 0.95342 1.21893 0.97529 0.95101 1.02131 1.22038 0.95225 0.99455 0.85634 1.47257 1.18219 1.63803 1.05996 1.15708 0.80160 0.78409 0.84422 1.90818 1.60186 1.63002 1.33940 1.41589 1.20292 1.57794 1.09417 1.19091 0.92857 0.97491 0.87726 1.21650 1.05152 1.14680 0.90998 1.23140 0.87061 0.98007 1.00877 1.48830 1.16292 1.42694 1.04808 1.19339 0.82092 0.90592 0.92557 1.21366 0.92320 1.09049 1.35841 0.93004 1.25751 1.02532 0.95828 0.94169 1.69990 1.29244 1.20643 1.35984 0.85400 0.77880 0.78550 0.78596 1.19769 1.19768 1.19565 1.77237 1.18854 1.23543 0.98100 1.21374 0.80899 0.94181 1.01583 0.91771 0.92117 0.92770 0.92493 0.93791 0.91893 0.91072 0.82523 0.89555 0.90096 0.87528 0.92654 0.88544 0.90143 0.74267 0.81869 0.78171 0.95995 0.92352 0.91835 0.91600 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.52 71.98 0.69 -0.92 16 2 C 0.07 1.04 3.01 44.91 0.14 1.17 16 3 C -0.18 -2.10 9.15 71.98 0.66 -1.45 16 4 N -0.67 -8.39 6.06 -469.80 -2.85 -11.23 16 5 C 0.08 1.18 2.44 44.85 0.11 1.29 16 6 H 0.03 0.59 7.12 -2.39 -0.02 0.57 16 7 C -0.11 -1.05 5.17 30.62 0.16 -0.90 16 8 C -0.13 -1.32 6.08 30.67 0.19 -1.13 16 9 C 0.10 1.38 6.39 86.36 0.55 1.93 16 10 N -0.62 -13.47 2.98 -837.75 -2.50 -15.97 16 11 C 0.71 22.36 8.26 179.05 1.48 23.84 16 12 O -0.60 -23.03 12.91 -4.00 -0.05 -23.08 16 13 N -0.64 -20.88 5.36 -321.23 -1.72 -22.60 16 14 C 0.28 11.89 8.11 133.31 1.08 12.97 16 15 C -0.29 -12.13 9.61 22.11 0.21 -11.91 16 16 C 0.06 2.36 11.44 83.52 0.96 3.32 16 17 N -0.34 -16.58 3.67 -351.84 -1.29 -17.87 16 18 C 0.27 14.37 6.26 85.64 0.54 14.91 16 19 C -0.55 -31.21 9.24 25.60 0.24 -30.98 16 20 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 21 C 0.02 0.98 5.46 84.66 0.46 1.44 16 22 N -0.92 -52.45 13.29 21.45 0.28 -52.16 16 23 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 N -0.35 -16.54 12.42 -54.44 -0.68 -17.21 16 28 C 0.14 2.84 5.87 86.22 0.51 3.34 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.08 7.17 -2.39 -0.02 1.06 16 33 H 0.04 0.61 7.43 -2.39 -0.02 0.59 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 36 H 0.35 3.15 8.07 -89.69 -0.72 2.43 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.55 8.10 -2.39 -0.02 0.53 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.13 5.65 -2.39 -0.01 1.11 16 43 H 0.42 11.19 6.31 -92.71 -0.59 10.61 16 44 H 0.16 6.66 5.93 -2.91 -0.02 6.64 16 45 H 0.20 6.51 8.06 -2.91 -0.02 6.48 16 46 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 48 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.07 1.70 6.36 -2.39 -0.02 1.68 16 50 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.24 397.47 0.83 -70.42 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.36 Total: 26.93 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 7.95 Total: 16.93 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -8.75 Total: -137.04 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -71.24 0.83 -70.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.298 kcal (2) G-P(sol) polarization free energy of solvation -71.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds