Wall clock time and date at job start Tue Mar 31 2020 19:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 N 1.46496 * 109.47134 * 119.99832 * 2 1 3 5 5 C 1.35492 * 126.98190 * 300.02702 * 4 2 1 6 6 N 1.30520 * 107.30861 * 179.97438 * 5 4 2 7 7 N 1.28596 * 109.67336 * 359.97438 * 6 5 4 8 8 C 1.30520 * 109.67614 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.35127 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.50086 * 180.10404 * 9 8 7 11 11 C 1.53116 * 109.50298 * 300.22386 * 9 8 7 12 12 C 1.53116 * 109.16123 * 177.59528 * 11 9 8 13 13 C 1.53034 * 109.27873 * 302.34876 * 12 11 9 14 14 N 1.46843 * 109.52822 * 59.17595 * 13 12 11 15 15 C 1.46894 * 111.00193 * 174.16349 * 14 13 12 16 16 C 1.50702 * 109.46937 * 190.59940 * 15 14 13 17 17 O 1.21280 * 120.00389 * 6.27465 * 16 15 14 18 18 N 1.34777 * 120.00179 * 186.26280 * 16 15 14 19 19 C 1.46495 * 120.00223 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47455 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99351 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00298 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99980 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47222 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47358 * 119.99801 * 24 22 20 27 27 H 1.48502 * 109.47207 * 240.00010 * 24 22 20 28 28 C 1.46849 * 111.19715 * 298.26498 * 14 13 12 29 29 H 1.09003 * 109.47243 * 299.99833 * 1 2 3 30 30 H 1.08997 * 109.47093 * 59.99786 * 1 2 3 31 31 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47243 * 240.00167 * 2 1 3 33 33 H 1.09004 * 109.46939 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47388 * 300.00034 * 3 2 1 35 35 H 1.09003 * 109.47002 * 60.00019 * 3 2 1 36 36 H 1.08001 * 126.35015 * 0.24550 * 5 4 2 37 37 H 1.09008 * 109.52448 * 297.49776 * 11 9 8 38 38 H 1.08995 * 109.52494 * 57.68925 * 11 9 8 39 39 H 1.09002 * 109.50811 * 182.40374 * 12 11 9 40 40 H 1.09004 * 109.53928 * 62.30526 * 12 11 9 41 41 H 1.09000 * 109.46034 * 299.15887 * 13 12 11 42 42 H 1.09004 * 109.46658 * 179.19586 * 13 12 11 43 43 H 1.09003 * 109.47202 * 310.59780 * 15 14 13 44 44 H 1.09000 * 109.47488 * 70.60617 * 15 14 13 45 45 H 0.97005 * 119.99619 * 0.02562 * 18 16 15 46 46 H 1.08999 * 109.47347 * 300.00416 * 19 18 16 47 47 H 1.09005 * 109.47142 * 60.00798 * 19 18 16 48 48 H 0.97001 * 120.00349 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.46069 * 301.71928 * 28 14 13 50 50 H 1.09004 * 109.45975 * 181.75637 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7793 -0.3535 2.4865 6 7 2.3959 -1.2260 3.2364 7 7 3.0018 -2.0834 2.4939 8 6 2.7999 -1.7967 1.2367 9 6 3.3367 -2.5550 0.0502 10 1 3.0011 -2.0762 -0.8697 11 6 4.8672 -2.5596 0.0963 12 6 5.4029 -3.3823 -1.0787 13 6 4.8319 -4.8002 -1.0046 14 7 3.3654 -4.7419 -1.0529 15 6 2.7870 -6.0904 -1.1234 16 6 1.3154 -5.9902 -1.4319 17 8 0.8220 -4.9130 -1.6909 18 7 0.5474 -7.0977 -1.4204 19 6 -0.8831 -7.0004 -1.7209 20 6 -1.5076 -8.3696 -1.6410 21 1 -0.8996 -9.2266 -1.3908 22 6 -2.8548 -8.5284 -1.8871 23 7 -3.5949 -7.4850 -2.1921 24 14 -3.6289 -10.2255 -1.7873 25 1 -2.5891 -11.2236 -1.4296 26 1 -4.6921 -10.2245 -0.7506 27 1 -4.2207 -10.5778 -3.1029 28 6 2.8256 -3.9968 0.0916 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.1849 0.4799 2.8309 37 1 5.2369 -1.5367 0.0233 38 1 5.2021 -3.0028 1.0340 39 1 6.4909 -3.4249 -1.0271 40 1 5.1010 -2.9171 -2.0171 41 1 5.1462 -5.2700 -0.0726 42 1 5.2001 -5.3846 -1.8479 43 1 3.2851 -6.6588 -1.9088 44 1 2.9241 -6.5950 -0.1670 45 1 0.9420 -7.9593 -1.2130 46 1 -1.3622 -6.3402 -0.9979 47 1 -1.0168 -6.5978 -2.7250 48 1 -4.5429 -7.5966 -2.3650 49 1 3.1493 -4.4704 1.0185 50 1 1.7366 -3.9977 0.0445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772216927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:03 Heat of formation + Delta-G solvation = 33.849997 kcal Electronic energy + Delta-G solvation = -29747.004609 eV Core-core repulsion = 25810.144567 eV Total energy + Delta-G solvation = -3936.860042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.23211 -39.59286 -38.06063 -36.86583 -34.30166 -33.92176 -32.31949 -32.10343 -31.51403 -29.24559 -28.35370 -27.73211 -26.42050 -24.16773 -23.81130 -23.51523 -22.20401 -21.58620 -20.43946 -19.62372 -19.55741 -17.39255 -17.06460 -16.18319 -16.13078 -15.64146 -15.60646 -15.15577 -15.00019 -14.78905 -14.55583 -14.36396 -14.16384 -13.84134 -13.68763 -13.39714 -13.10066 -13.05585 -12.73536 -12.70933 -12.36955 -12.15044 -11.92126 -11.91254 -11.84737 -11.44927 -11.36536 -11.31158 -10.97413 -10.94033 -10.92378 -10.70160 -10.61772 -10.33118 -10.31773 -10.25642 -9.38546 -9.19443 -9.00046 -8.74074 -8.23479 -7.85719 -6.17864 -4.24398 1.75358 2.32241 2.87344 3.22783 3.29959 3.32937 3.39412 3.60991 4.07032 4.13476 4.30446 4.40406 4.43208 4.49187 4.58055 4.68656 4.73553 4.87550 4.99119 5.06495 5.12778 5.18569 5.22699 5.30333 5.30636 5.38879 5.41659 5.44166 5.47147 5.50069 5.55655 5.61435 5.69157 5.76082 5.80129 5.81680 5.89138 5.99411 6.10568 6.13875 6.27664 6.79060 6.95246 7.10025 7.31701 7.45364 7.51182 7.67525 7.96346 8.64032 8.72697 8.78751 9.12700 9.42605 10.92414 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.002855 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.628693 B = 9803.846278 C =11120.396177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 C -0.161 4.161 4 N -0.464 5.464 5 C 0.146 3.854 6 N -0.300 5.300 7 N -0.293 5.293 8 C 0.190 3.810 9 C 0.007 3.993 10 H 0.094 0.906 11 C -0.108 4.108 12 C -0.113 4.113 13 C 0.052 3.948 14 N -0.518 5.518 15 C 0.037 3.963 16 C 0.498 3.502 17 O -0.540 6.540 18 N -0.715 5.715 19 C 0.252 3.748 20 C -0.542 4.542 21 H 0.063 0.937 22 C 0.063 3.937 23 N -0.886 5.886 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.067 3.933 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.212 0.788 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.390 0.610 46 H 0.025 0.975 47 H 0.026 0.974 48 H 0.265 0.735 49 H 0.042 0.958 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.458 15.367 2.535 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 C -0.219 4.219 4 N -0.155 5.155 5 C -0.141 4.141 6 N -0.139 5.139 7 N -0.133 5.133 8 C -0.078 4.078 9 C -0.014 4.014 10 H 0.112 0.888 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.076 4.076 14 N -0.243 5.243 15 C -0.095 4.095 16 C 0.282 3.718 17 O -0.418 6.418 18 N -0.364 5.364 19 C 0.131 3.869 20 C -0.580 4.580 21 H 0.081 0.919 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.061 4.061 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.222 0.778 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.228 15.755 3.109 22.831 hybrid contribution -0.828 -0.972 -0.244 1.300 sum 15.400 14.784 2.865 21.539 Atomic orbital electron populations 1.22191 0.92335 1.04266 1.03470 1.21627 0.96257 0.93892 0.86120 1.22179 1.02062 0.93974 1.03673 1.46496 1.38017 1.22642 1.08296 1.26206 1.04355 1.03252 0.80322 1.74238 1.10510 1.02434 1.26695 1.74206 1.20090 1.20276 0.98756 1.24767 0.96574 0.89334 0.97148 1.19579 0.95654 0.94763 0.91395 0.88774 1.21600 0.92849 1.00522 0.99723 1.21560 0.99641 0.95065 0.98824 1.22159 0.87296 0.97340 1.00763 1.61480 1.05139 1.14631 1.43010 1.22002 0.94670 0.90700 1.02084 1.20307 0.87848 0.85048 0.78574 1.90618 1.74638 1.27781 1.48813 1.46464 1.12098 1.08681 1.69182 1.19067 0.73816 0.97373 0.96624 1.21272 0.94208 0.93090 1.49449 0.91862 1.24949 0.96989 0.97386 0.94715 1.69979 1.06802 1.29429 1.46137 0.86369 0.79283 0.83521 0.77790 1.19615 1.20802 1.20795 1.22083 1.01687 0.91230 0.91137 0.91701 0.89899 0.90886 0.87233 0.91746 0.89947 0.91591 0.77128 0.91901 0.90793 0.91006 0.90821 0.94600 0.90413 0.88030 0.92388 0.77800 0.95752 0.95576 0.92537 0.93990 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.25 37.16 0.34 -1.00 16 2 C 0.12 1.02 3.57 -67.93 -0.24 0.78 16 3 C -0.16 -0.91 9.26 37.16 0.34 -0.57 16 4 N -0.46 -5.19 2.60 -108.21 -0.28 -5.47 16 5 C 0.15 1.68 11.81 -89.95 -1.06 0.62 16 6 N -0.30 -4.62 12.21 29.69 0.36 -4.26 16 7 N -0.29 -4.71 12.21 32.80 0.40 -4.31 16 8 C 0.19 2.57 6.54 -154.98 -1.01 1.55 16 9 C 0.01 0.09 2.72 -91.70 -0.25 -0.16 16 10 H 0.09 1.12 6.47 -51.93 -0.34 0.79 16 11 C -0.11 -1.10 5.27 -26.61 -0.14 -1.24 16 12 C -0.11 -1.01 6.09 -26.65 -0.16 -1.17 16 13 C 0.05 0.54 5.46 -3.84 -0.02 0.52 16 14 N -0.52 -7.09 4.35 -236.12 -1.03 -8.11 16 15 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 16 C 0.50 9.73 7.36 -10.98 -0.08 9.65 16 17 O -0.54 -12.53 14.71 5.56 0.08 -12.45 16 18 N -0.72 -14.87 5.55 -61.47 -0.34 -15.21 16 19 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 20 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 21 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 24 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.07 0.99 4.38 -3.84 -0.02 0.97 16 29 H 0.06 0.45 7.97 -51.93 -0.41 0.04 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 0.92 6.44 -51.93 -0.33 0.59 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.33 7.97 -51.93 -0.41 -0.08 16 36 H 0.21 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 43 H 0.10 1.20 7.98 -51.93 -0.41 0.79 16 44 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 46 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.70 6.06 -51.93 -0.31 1.39 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -35.02 402.11 -10.24 -45.25 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.43 Total: 4.24 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.77 Total: 3.72 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.15 Total: -62.66 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.02 -10.24 -45.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772216927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.102 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds