Wall clock time and date at job start Tue Mar 31 2020 19:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 N 1.46496 * 109.47134 * 119.99832 * 2 1 3 5 5 C 1.35492 * 126.98190 * 300.02702 * 4 2 1 6 6 N 1.30520 * 107.30861 * 179.97438 * 5 4 2 7 7 N 1.28596 * 109.67336 * 359.97438 * 6 5 4 8 8 C 1.30520 * 109.67614 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.35127 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.50086 * 180.10404 * 9 8 7 11 11 C 1.53116 * 109.50298 * 300.22386 * 9 8 7 12 12 C 1.53116 * 109.16123 * 177.59528 * 11 9 8 13 13 C 1.53034 * 109.27873 * 302.34876 * 12 11 9 14 14 N 1.46843 * 109.52822 * 59.17595 * 13 12 11 15 15 C 1.46894 * 111.00193 * 174.16349 * 14 13 12 16 16 C 1.50702 * 109.46937 * 190.59940 * 15 14 13 17 17 O 1.21280 * 120.00389 * 6.27465 * 16 15 14 18 18 N 1.34777 * 120.00179 * 186.26280 * 16 15 14 19 19 C 1.46495 * 120.00223 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47455 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99351 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00298 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99980 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47222 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47358 * 119.99801 * 24 22 20 27 27 H 1.48502 * 109.47207 * 240.00010 * 24 22 20 28 28 C 1.46849 * 111.19715 * 298.26498 * 14 13 12 29 29 H 1.09003 * 109.47243 * 299.99833 * 1 2 3 30 30 H 1.08997 * 109.47093 * 59.99786 * 1 2 3 31 31 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47243 * 240.00167 * 2 1 3 33 33 H 1.09004 * 109.46939 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47388 * 300.00034 * 3 2 1 35 35 H 1.09003 * 109.47002 * 60.00019 * 3 2 1 36 36 H 1.08001 * 126.35015 * 0.24550 * 5 4 2 37 37 H 1.09008 * 109.52448 * 297.49776 * 11 9 8 38 38 H 1.08995 * 109.52494 * 57.68925 * 11 9 8 39 39 H 1.09002 * 109.50811 * 182.40374 * 12 11 9 40 40 H 1.09004 * 109.53928 * 62.30526 * 12 11 9 41 41 H 1.09000 * 109.46034 * 299.15887 * 13 12 11 42 42 H 1.09004 * 109.46658 * 179.19586 * 13 12 11 43 43 H 1.09003 * 109.47202 * 310.59780 * 15 14 13 44 44 H 1.09000 * 109.47488 * 70.60617 * 15 14 13 45 45 H 0.97005 * 119.99619 * 0.02562 * 18 16 15 46 46 H 1.08999 * 109.47347 * 300.00416 * 19 18 16 47 47 H 1.09005 * 109.47142 * 60.00798 * 19 18 16 48 48 H 0.97001 * 120.00349 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.46069 * 301.71928 * 28 14 13 50 50 H 1.09004 * 109.45975 * 181.75637 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7793 -0.3535 2.4865 6 7 2.3959 -1.2260 3.2364 7 7 3.0018 -2.0834 2.4939 8 6 2.7999 -1.7967 1.2367 9 6 3.3367 -2.5550 0.0502 10 1 3.0011 -2.0762 -0.8697 11 6 4.8672 -2.5596 0.0963 12 6 5.4029 -3.3823 -1.0787 13 6 4.8319 -4.8002 -1.0046 14 7 3.3654 -4.7419 -1.0529 15 6 2.7870 -6.0904 -1.1234 16 6 1.3154 -5.9902 -1.4319 17 8 0.8220 -4.9130 -1.6909 18 7 0.5474 -7.0977 -1.4204 19 6 -0.8831 -7.0004 -1.7209 20 6 -1.5076 -8.3696 -1.6410 21 1 -0.8996 -9.2266 -1.3908 22 6 -2.8548 -8.5284 -1.8871 23 7 -3.5949 -7.4850 -2.1921 24 14 -3.6289 -10.2255 -1.7873 25 1 -2.5891 -11.2236 -1.4296 26 1 -4.6921 -10.2245 -0.7506 27 1 -4.2207 -10.5778 -3.1029 28 6 2.8256 -3.9968 0.0916 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.1849 0.4799 2.8309 37 1 5.2369 -1.5367 0.0233 38 1 5.2021 -3.0028 1.0340 39 1 6.4909 -3.4249 -1.0271 40 1 5.1010 -2.9171 -2.0171 41 1 5.1462 -5.2700 -0.0726 42 1 5.2001 -5.3846 -1.8479 43 1 3.2851 -6.6588 -1.9088 44 1 2.9241 -6.5950 -0.1670 45 1 0.9420 -7.9593 -1.2130 46 1 -1.3622 -6.3402 -0.9979 47 1 -1.0168 -6.5978 -2.7250 48 1 -4.5429 -7.5966 -2.3650 49 1 3.1493 -4.4704 1.0185 50 1 1.7366 -3.9977 0.0445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772216927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:02 Heat of formation + Delta-G solvation = 10.034160 kcal Electronic energy + Delta-G solvation = -29748.037341 eV Core-core repulsion = 25810.144567 eV Total energy + Delta-G solvation = -3937.892775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.21572 -40.91853 -39.40182 -37.65582 -36.13341 -35.09712 -34.32843 -33.00902 -32.36174 -30.32743 -29.97654 -28.30424 -28.01251 -25.09752 -24.99907 -24.70518 -23.78786 -22.51205 -21.40632 -21.21648 -20.49526 -18.93079 -18.20322 -17.53030 -17.29983 -17.12680 -16.75881 -16.57052 -16.23438 -15.91168 -15.72450 -15.52613 -15.25388 -15.09249 -14.63905 -14.35082 -14.22963 -14.13406 -14.03464 -13.83184 -13.73708 -13.25821 -13.23759 -12.88704 -12.88010 -12.71279 -12.66803 -12.58482 -12.35534 -12.23692 -12.05228 -11.79487 -11.64955 -11.54761 -11.46634 -11.35417 -11.14545 -10.82268 -10.64242 -10.21994 -9.80071 -9.31652 -8.30770 -6.47010 0.80659 1.41802 1.42777 1.48203 1.56247 1.80813 1.82808 2.26634 2.45016 2.90780 3.04244 3.31026 3.46227 3.58652 3.73832 3.76705 3.83923 3.95475 3.99485 4.08003 4.14583 4.26644 4.34429 4.38044 4.44482 4.47142 4.57572 4.60046 4.68606 4.71284 4.72223 4.76302 4.88422 4.94604 5.00222 5.04802 5.10189 5.13544 5.16328 5.17595 5.22175 5.23463 5.44101 5.48812 5.69166 5.83967 5.89473 5.93097 6.12493 6.64534 6.95493 7.22730 7.53328 7.69925 8.81638 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.002855 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.628693 B = 9803.846278 C =11120.396177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.462 5.462 5 C 0.160 3.840 6 N -0.345 5.345 7 N -0.330 5.330 8 C 0.181 3.819 9 C 0.013 3.987 10 H 0.095 0.905 11 C -0.101 4.101 12 C -0.107 4.107 13 C 0.050 3.950 14 N -0.530 5.530 15 C 0.049 3.951 16 C 0.493 3.507 17 O -0.582 6.582 18 N -0.712 5.712 19 C 0.271 3.729 20 C -0.555 4.555 21 H 0.083 0.917 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.984 3.016 25 H -0.253 1.253 26 H -0.280 1.280 27 H -0.277 1.277 28 C 0.078 3.922 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.033 0.967 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.407 0.593 46 H -0.019 1.019 47 H -0.012 1.012 48 H 0.268 0.732 49 H 0.031 0.969 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.355 15.026 2.060 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 C -0.210 4.210 4 N -0.152 5.152 5 C -0.128 4.128 6 N -0.184 5.184 7 N -0.170 5.170 8 C -0.088 4.088 9 C -0.008 4.008 10 H 0.113 0.887 11 C -0.139 4.139 12 C -0.145 4.145 13 C -0.077 4.077 14 N -0.255 5.255 15 C -0.082 4.082 16 C 0.279 3.721 17 O -0.462 6.462 18 N -0.363 5.363 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.101 0.899 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.807 3.193 25 H -0.177 1.177 26 H -0.206 1.206 27 H -0.203 1.203 28 C -0.051 4.051 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.155 0.845 44 H 0.096 0.904 45 H 0.243 0.757 46 H -0.001 1.001 47 H 0.006 0.994 48 H 0.077 0.923 49 H 0.049 0.951 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.185 15.401 2.637 23.976 hybrid contribution -1.454 -0.762 -0.114 1.646 sum 16.731 14.639 2.523 22.374 Atomic orbital electron populations 1.22186 0.92358 1.02156 1.05255 1.21880 0.96177 0.95392 0.84753 1.22148 1.01814 0.91773 1.05232 1.46731 1.37229 1.22109 1.09157 1.26925 1.02882 1.02967 0.80048 1.74133 1.12404 1.03819 1.28003 1.74095 1.21585 1.21417 0.99888 1.24977 0.96925 0.90083 0.96865 1.19572 0.97319 0.92970 0.90942 0.88697 1.21560 0.90822 1.01600 0.99933 1.21576 1.01126 0.93774 0.97979 1.22333 0.84552 0.98794 1.02012 1.61484 1.07454 1.14216 1.42388 1.21966 0.90239 0.91834 1.04159 1.21376 0.90124 0.83732 0.76830 1.90601 1.76024 1.29350 1.50273 1.46210 1.10084 1.10304 1.69659 1.18467 0.76997 0.96574 0.93197 1.21657 0.94860 0.93512 1.49225 0.89885 1.26058 0.97656 1.01988 0.93923 1.70138 1.07317 1.32319 1.47172 0.85125 0.78366 0.78015 0.77805 1.17652 1.20586 1.20283 1.21827 0.98951 0.93132 0.91190 0.90131 0.87960 0.94812 0.87833 0.92025 0.87956 0.90447 0.73192 0.90599 0.91894 0.88198 0.90702 0.93983 0.88217 0.84543 0.90400 0.75725 1.00075 0.99396 0.92280 0.95054 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.25 71.98 0.67 -1.97 16 2 C 0.12 1.91 3.57 44.99 0.16 2.08 16 3 C -0.15 -1.39 9.26 71.98 0.67 -0.72 16 4 N -0.46 -10.43 2.60 -496.28 -1.29 -11.72 16 5 C 0.16 3.63 11.81 180.11 2.13 5.76 16 6 N -0.34 -10.91 12.21 -59.99 -0.73 -11.65 16 7 N -0.33 -11.04 12.21 -50.15 -0.61 -11.65 16 8 C 0.18 5.07 6.54 137.97 0.90 5.97 16 9 C 0.01 0.33 2.72 -11.49 -0.03 0.30 16 10 H 0.09 2.32 6.47 -2.39 -0.02 2.31 16 11 C -0.10 -1.93 5.27 30.67 0.16 -1.77 16 12 C -0.11 -1.62 6.09 30.64 0.19 -1.43 16 13 C 0.05 0.89 5.46 86.33 0.47 1.36 16 14 N -0.53 -14.09 4.35 -900.95 -3.92 -18.01 16 15 C 0.05 1.32 5.45 85.56 0.47 1.78 16 16 C 0.49 19.76 7.36 87.66 0.65 20.41 16 17 O -0.58 -28.61 14.71 -3.03 -0.04 -28.65 16 18 N -0.71 -30.31 5.55 -466.78 -2.59 -32.90 16 19 C 0.27 15.02 5.43 85.64 0.46 15.48 16 20 C -0.55 -30.45 9.28 25.60 0.24 -30.21 16 21 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 22 C 0.00 0.18 5.46 84.65 0.46 0.64 16 23 N -0.93 -56.47 13.29 21.44 0.28 -56.18 16 24 Si 0.98 42.65 29.54 68.60 2.03 44.67 16 25 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 28 C 0.08 2.39 4.38 86.32 0.38 2.76 16 29 H 0.08 1.04 7.97 -2.39 -0.02 1.02 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.77 6.44 -2.39 -0.02 1.76 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.56 7.97 -2.39 -0.02 0.54 16 36 H 0.25 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.40 8.01 -2.38 -0.02 1.38 16 43 H 0.14 2.79 7.98 -2.39 -0.02 2.77 16 44 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 45 H 0.41 14.27 8.32 -92.70 -0.77 13.50 16 46 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 47 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 48 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 49 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 1.87 6.06 -2.39 -0.01 1.85 16 Total: -1.00 -82.43 402.11 1.25 -81.18 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.16 Total: 24.46 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 7.97 Total: 20.45 kcal Atomic # 7 Polarization: -133.25 SS G_CDS: -8.86 Total: -142.11 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.04 Total: -28.65 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -82.43 1.25 -81.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772216927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.214 kcal (2) G-P(sol) polarization free energy of solvation -82.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds