Wall clock time and date at job start Tue Mar 31 2020 18:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 H 1.09001 * 109.46830 * 305.49739 * 3 2 1 5 5 N 1.46900 * 109.46764 * 185.49476 * 3 2 1 6 6 C 1.46903 * 110.99759 * 85.54194 * 5 3 2 7 7 C 1.50696 * 109.46985 * 176.40517 * 6 5 3 8 8 O 1.21280 * 120.00214 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00219 * 180.02562 * 7 6 5 10 10 C 1.46489 * 120.00065 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47190 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00353 * 359.97438 * 11 10 9 13 13 C 1.37888 * 120.00357 * 180.02562 * 11 10 9 14 14 N 1.31505 * 119.99584 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99970 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47318 * 90.00039 * 15 13 11 17 17 H 1.48501 * 109.47138 * 210.00102 * 15 13 11 18 18 H 1.48501 * 109.47305 * 329.99914 * 15 13 11 19 19 C 1.50702 * 109.46989 * 65.49876 * 3 2 1 20 20 N 1.30674 * 126.43685 * 74.97344 * 19 3 2 21 21 N 1.28757 * 109.70390 * 179.64708 * 20 19 3 22 22 C 1.30250 * 109.53621 * 359.76310 * 21 20 19 23 23 N 1.35142 * 126.42812 * 254.97234 * 19 3 2 24 24 C 1.46320 * 127.22704 * 1.43796 * 23 19 3 25 25 C 1.53043 * 109.36658 * 207.32856 * 24 23 19 26 26 C 1.52801 * 109.74304 * 270.76279 * 25 24 23 27 27 C 1.52556 * 110.48211 * 61.43567 * 26 25 24 28 28 C 1.50676 * 127.18772 * 180.82606 * 22 21 20 29 29 H 1.09010 * 109.46941 * 303.92624 * 1 2 3 30 30 H 1.09003 * 109.47389 * 63.92032 * 1 2 3 31 31 H 1.08998 * 109.47358 * 183.92297 * 1 2 3 32 32 H 1.08994 * 109.47113 * 239.99863 * 2 1 3 33 33 H 1.08995 * 109.46581 * 119.99970 * 2 1 3 34 34 H 1.00897 * 111.00077 * 209.49788 * 5 3 2 35 35 H 1.08996 * 109.47469 * 296.40648 * 6 5 3 36 36 H 1.09000 * 109.47043 * 56.41222 * 6 5 3 37 37 H 0.97001 * 119.99451 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.47763 * 299.99964 * 10 9 7 39 39 H 1.08997 * 109.47386 * 60.00354 * 10 9 7 40 40 H 0.97007 * 119.99964 * 180.02562 * 14 13 11 41 41 H 1.08994 * 109.48146 * 327.32061 * 24 23 19 42 42 H 1.08995 * 109.48157 * 87.35778 * 24 23 19 43 43 H 1.09003 * 109.38004 * 150.69754 * 25 24 23 44 44 H 1.08993 * 109.44247 * 30.86467 * 25 24 23 45 45 H 1.09005 * 109.27175 * 301.18879 * 26 25 24 46 46 H 1.09002 * 109.26711 * 181.68744 * 26 25 24 47 47 H 1.09007 * 109.45153 * 153.47761 * 27 26 25 48 48 H 1.08997 * 109.45570 * 273.43754 * 27 26 25 49 49 H 1.08999 * 109.53811 * 107.08731 * 28 22 21 50 50 H 1.09008 * 109.53670 * 346.84571 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5985 1.9840 -0.8367 5 7 3.5031 1.4446 -0.1326 6 6 3.9037 1.3824 -1.5446 7 6 5.4044 1.4753 -1.6454 8 8 6.0743 1.5822 -0.6401 9 7 6.0022 1.4395 -2.8529 10 6 7.4610 1.5304 -2.9509 11 6 7.8720 1.4677 -4.3994 12 1 7.1217 1.3696 -5.1699 13 6 9.2062 1.5347 -4.7411 14 7 10.1200 1.6536 -3.8028 15 14 9.7156 1.4563 -6.5365 16 1 9.7584 2.8298 -7.0994 17 1 11.0605 0.8356 -6.6429 18 1 8.7329 0.6410 -7.2948 19 6 1.6519 2.1125 1.2929 20 7 2.2020 1.9199 2.4625 21 7 1.6249 2.6632 3.3413 22 6 0.6871 3.3643 2.7707 23 7 0.6697 3.0255 1.4603 24 6 -0.2448 3.5391 0.4401 25 6 -0.6955 4.9497 0.8263 26 6 -1.9515 4.8712 1.6929 27 6 -1.6636 4.1081 2.9821 28 6 -0.2214 4.3731 3.4244 29 1 -0.3633 0.5736 0.8528 30 1 -0.3634 0.4518 -0.9230 31 1 -0.3634 -1.0252 0.0703 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9063 2.2497 0.3226 35 1 3.5682 0.4395 -1.9763 36 1 3.4511 2.2121 -2.0876 37 1 5.4664 1.3544 -3.6570 38 1 7.7963 2.4734 -2.5190 39 1 7.9141 0.7008 -2.4082 40 1 11.0586 1.7011 -4.0432 41 1 0.2654 3.5706 -0.5226 42 1 -1.1145 2.8859 0.3695 43 1 -0.9131 5.5199 -0.0769 44 1 0.0995 5.4446 1.3840 45 1 -2.7387 4.3588 1.1398 46 1 -2.2827 5.8802 1.9384 47 1 -2.3492 4.4406 3.7616 48 1 -1.7998 3.0404 2.8102 49 1 0.0735 5.3783 3.1231 50 1 -0.1494 4.2802 4.5081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852629044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:00 Heat of formation + Delta-G solvation = 30.240475 kcal Electronic energy + Delta-G solvation = -29180.646796 eV Core-core repulsion = 25243.630233 eV Total energy + Delta-G solvation = -3937.016563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53694 -38.98636 -38.25661 -37.13181 -34.49523 -34.14134 -32.83490 -32.29595 -32.04537 -30.25111 -28.32647 -26.97506 -26.41239 -25.11003 -24.49307 -23.05021 -22.27795 -20.88252 -20.57942 -20.13322 -19.71146 -17.76830 -17.11365 -16.85864 -16.09654 -15.73774 -15.63186 -15.56788 -15.34673 -14.97247 -14.77543 -14.40886 -14.35243 -14.02203 -13.73143 -13.45021 -13.37609 -13.15555 -12.70815 -12.60566 -12.41509 -12.23344 -11.97620 -11.85214 -11.79107 -11.63440 -11.53878 -11.50511 -11.35454 -11.19594 -10.98693 -10.95426 -10.87096 -10.33729 -10.31630 -10.31369 -9.39218 -9.20517 -9.02341 -8.73172 -8.49994 -7.86248 -6.15806 -4.22952 1.57812 2.14158 2.76036 3.23908 3.29944 3.32450 3.37816 3.68141 3.79992 3.94946 3.97377 3.99332 4.18220 4.25892 4.40966 4.47520 4.50799 4.58525 4.64788 4.81529 4.83264 4.99647 5.05859 5.09426 5.13117 5.15690 5.20004 5.21862 5.28894 5.40428 5.41797 5.46589 5.51514 5.55777 5.60208 5.64441 5.72323 5.74074 5.87231 5.99457 6.15487 6.61421 6.81431 7.27395 7.34133 7.45203 7.53827 7.67432 7.98074 8.63363 8.66409 8.79217 9.12004 9.43580 10.94353 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.002054 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.654372 B =13630.573625 C =13683.748357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.183 3.817 4 H 0.056 0.944 5 N -0.652 5.652 6 C 0.039 3.961 7 C 0.496 3.504 8 O -0.538 6.538 9 N -0.714 5.714 10 C 0.251 3.749 11 C -0.544 4.544 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.884 5.884 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.171 3.829 20 N -0.263 5.263 21 N -0.293 5.293 22 C 0.174 3.826 23 N -0.465 5.465 24 C 0.102 3.898 25 C -0.142 4.142 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.035 4.035 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.359 0.641 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.261 6.106 7.320 32.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.071 3.929 4 H 0.074 0.926 5 N -0.287 5.287 6 C -0.093 4.093 7 C 0.279 3.721 8 O -0.415 6.415 9 N -0.363 5.363 10 C 0.130 3.870 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.096 4.096 20 N -0.103 5.103 21 N -0.133 5.133 22 C -0.093 4.093 23 N -0.157 5.157 24 C -0.021 4.021 25 C -0.179 4.179 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.075 4.075 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.110 0.890 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -29.538 4.987 9.236 31.347 hybrid contribution -0.907 1.311 -2.737 3.167 sum -30.445 6.298 6.500 31.762 Atomic orbital electron populations 1.21809 0.96020 1.02203 1.00960 1.21565 0.94631 0.94352 1.04397 1.19885 0.89602 0.95661 0.87797 0.92587 1.60129 1.05201 1.50430 1.12918 1.21966 0.94982 1.02616 0.89777 1.20250 0.89130 0.78222 0.84470 1.90703 1.65646 1.49498 1.35698 1.46427 1.10968 1.72323 1.06619 1.19094 0.73182 0.97673 0.97063 1.21218 0.92610 1.52805 0.91559 0.91932 1.24965 0.96317 0.94756 0.98062 1.69976 1.01197 1.48412 1.32565 0.86413 0.78062 0.78234 0.84167 1.20513 1.20990 1.19765 1.24626 0.91143 0.94828 0.99036 1.74490 1.21549 1.18061 0.96195 1.74324 1.07108 1.07137 1.24717 1.24648 1.00687 1.02223 0.81709 1.46059 1.27283 1.32768 1.09630 1.22030 0.93106 0.96497 0.90445 1.22016 0.99288 0.94896 1.01716 1.21603 0.97097 1.01526 0.95891 1.21617 0.95506 1.01122 0.97945 1.20198 0.91319 0.94990 1.00979 0.93550 0.92852 0.91932 0.90327 0.89924 0.81904 0.88184 0.92887 0.77832 0.95630 0.95436 0.92428 0.88779 0.89159 0.89290 0.89930 0.91207 0.90802 0.90129 0.91635 0.89031 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.79 37.16 0.36 -0.81 16 2 C -0.11 -1.13 5.64 -26.73 -0.15 -1.28 16 3 C 0.18 2.03 2.48 -68.86 -0.17 1.86 16 4 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 5 N -0.65 -9.55 5.99 -109.22 -0.65 -10.20 16 6 C 0.04 0.54 6.00 -4.98 -0.03 0.51 16 7 C 0.50 9.88 7.86 -10.99 -0.09 9.79 16 8 O -0.54 -13.35 16.12 5.56 0.09 -13.26 16 9 N -0.71 -14.87 5.55 -61.48 -0.34 -15.21 16 10 C 0.25 6.69 5.43 -5.20 -0.03 6.66 16 11 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.88 -26.26 13.29 55.43 0.74 -25.53 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.17 2.14 5.47 -155.18 -0.85 1.30 16 20 N -0.26 -4.29 12.22 32.76 0.40 -3.88 16 21 N -0.29 -4.45 12.22 32.72 0.40 -4.05 16 22 C 0.17 1.89 6.92 -155.35 -1.08 0.81 16 23 N -0.47 -4.45 3.03 -110.94 -0.34 -4.78 16 24 C 0.10 0.55 6.22 -4.12 -0.03 0.53 16 25 C -0.14 -0.54 5.54 -26.81 -0.15 -0.69 16 26 C -0.12 -0.36 5.67 -27.06 -0.15 -0.52 16 27 C -0.12 -0.53 5.68 -26.87 -0.15 -0.68 16 28 C -0.04 -0.23 5.55 -27.81 -0.15 -0.38 16 29 H 0.05 0.40 7.26 -51.92 -0.38 0.02 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.74 7.44 -51.93 -0.39 0.36 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.36 6.02 7.90 -39.29 -0.31 5.71 16 35 H 0.10 1.17 7.47 -51.93 -0.39 0.78 16 36 H 0.05 0.59 7.97 -51.93 -0.41 0.18 16 37 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.09 0.43 7.15 -51.93 -0.37 0.06 16 42 H 0.09 0.37 7.82 -51.93 -0.41 -0.03 16 43 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.43 5.69 -51.93 -0.30 0.13 16 45 H 0.07 0.16 8.09 -51.93 -0.42 -0.26 16 46 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 0.37 7.84 -51.93 -0.41 -0.04 16 49 H 0.09 0.48 6.33 -51.93 -0.33 0.15 16 50 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -36.53 397.30 -9.94 -46.47 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.12 Total: 4.95 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -3.08 Total: 3.68 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.20 Total: -63.65 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.53 -9.94 -46.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852629044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.708 kcal (2) G-P(sol) polarization free energy of solvation -36.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds