Wall clock time and date at job start Tue Mar 31 2020 18:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 H 1.09001 * 109.46830 * 305.49739 * 3 2 1 5 5 N 1.46900 * 109.46764 * 185.49476 * 3 2 1 6 6 C 1.46903 * 110.99759 * 85.54194 * 5 3 2 7 7 C 1.50696 * 109.46985 * 176.40517 * 6 5 3 8 8 O 1.21280 * 120.00214 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00219 * 180.02562 * 7 6 5 10 10 C 1.46489 * 120.00065 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47190 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00353 * 359.97438 * 11 10 9 13 13 C 1.37888 * 120.00357 * 180.02562 * 11 10 9 14 14 N 1.31505 * 119.99584 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99970 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47318 * 90.00039 * 15 13 11 17 17 H 1.48501 * 109.47138 * 210.00102 * 15 13 11 18 18 H 1.48501 * 109.47305 * 329.99914 * 15 13 11 19 19 C 1.50702 * 109.46989 * 65.49876 * 3 2 1 20 20 N 1.30674 * 126.43685 * 74.97344 * 19 3 2 21 21 N 1.28757 * 109.70390 * 179.64708 * 20 19 3 22 22 C 1.30250 * 109.53621 * 359.76310 * 21 20 19 23 23 N 1.35142 * 126.42812 * 254.97234 * 19 3 2 24 24 C 1.46320 * 127.22704 * 1.43796 * 23 19 3 25 25 C 1.53043 * 109.36658 * 207.32856 * 24 23 19 26 26 C 1.52801 * 109.74304 * 270.76279 * 25 24 23 27 27 C 1.52556 * 110.48211 * 61.43567 * 26 25 24 28 28 C 1.50676 * 127.18772 * 180.82606 * 22 21 20 29 29 H 1.09010 * 109.46941 * 303.92624 * 1 2 3 30 30 H 1.09003 * 109.47389 * 63.92032 * 1 2 3 31 31 H 1.08998 * 109.47358 * 183.92297 * 1 2 3 32 32 H 1.08994 * 109.47113 * 239.99863 * 2 1 3 33 33 H 1.08995 * 109.46581 * 119.99970 * 2 1 3 34 34 H 1.00897 * 111.00077 * 209.49788 * 5 3 2 35 35 H 1.08996 * 109.47469 * 296.40648 * 6 5 3 36 36 H 1.09000 * 109.47043 * 56.41222 * 6 5 3 37 37 H 0.97001 * 119.99451 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.47763 * 299.99964 * 10 9 7 39 39 H 1.08997 * 109.47386 * 60.00354 * 10 9 7 40 40 H 0.97007 * 119.99964 * 180.02562 * 14 13 11 41 41 H 1.08994 * 109.48146 * 327.32061 * 24 23 19 42 42 H 1.08995 * 109.48157 * 87.35778 * 24 23 19 43 43 H 1.09003 * 109.38004 * 150.69754 * 25 24 23 44 44 H 1.08993 * 109.44247 * 30.86467 * 25 24 23 45 45 H 1.09005 * 109.27175 * 301.18879 * 26 25 24 46 46 H 1.09002 * 109.26711 * 181.68744 * 26 25 24 47 47 H 1.09007 * 109.45153 * 153.47761 * 27 26 25 48 48 H 1.08997 * 109.45570 * 273.43754 * 27 26 25 49 49 H 1.08999 * 109.53811 * 107.08731 * 28 22 21 50 50 H 1.09008 * 109.53670 * 346.84571 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5985 1.9840 -0.8367 5 7 3.5031 1.4446 -0.1326 6 6 3.9037 1.3824 -1.5446 7 6 5.4044 1.4753 -1.6454 8 8 6.0743 1.5822 -0.6401 9 7 6.0022 1.4395 -2.8529 10 6 7.4610 1.5304 -2.9509 11 6 7.8720 1.4677 -4.3994 12 1 7.1217 1.3696 -5.1699 13 6 9.2062 1.5347 -4.7411 14 7 10.1200 1.6536 -3.8028 15 14 9.7156 1.4563 -6.5365 16 1 9.7584 2.8298 -7.0994 17 1 11.0605 0.8356 -6.6429 18 1 8.7329 0.6410 -7.2948 19 6 1.6519 2.1125 1.2929 20 7 2.2020 1.9199 2.4625 21 7 1.6249 2.6632 3.3413 22 6 0.6871 3.3643 2.7707 23 7 0.6697 3.0255 1.4603 24 6 -0.2448 3.5391 0.4401 25 6 -0.6955 4.9497 0.8263 26 6 -1.9515 4.8712 1.6929 27 6 -1.6636 4.1081 2.9821 28 6 -0.2214 4.3731 3.4244 29 1 -0.3633 0.5736 0.8528 30 1 -0.3634 0.4518 -0.9230 31 1 -0.3634 -1.0252 0.0703 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9063 2.2497 0.3226 35 1 3.5682 0.4395 -1.9763 36 1 3.4511 2.2121 -2.0876 37 1 5.4664 1.3544 -3.6570 38 1 7.7963 2.4734 -2.5190 39 1 7.9141 0.7008 -2.4082 40 1 11.0586 1.7011 -4.0432 41 1 0.2654 3.5706 -0.5226 42 1 -1.1145 2.8859 0.3695 43 1 -0.9131 5.5199 -0.0769 44 1 0.0995 5.4446 1.3840 45 1 -2.7387 4.3588 1.1398 46 1 -2.2827 5.8802 1.9384 47 1 -2.3492 4.4406 3.7616 48 1 -1.7998 3.0404 2.8102 49 1 0.0735 5.3783 3.1231 50 1 -0.1494 4.2802 4.5081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852629044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:59 Heat of formation + Delta-G solvation = 2.512934 kcal Electronic energy + Delta-G solvation = -29181.849152 eV Core-core repulsion = 25243.630233 eV Total energy + Delta-G solvation = -3938.218919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.38097 -40.58488 -38.74377 -38.18220 -36.13412 -35.14669 -34.35528 -33.72345 -32.64773 -31.01378 -29.88486 -28.18505 -27.14360 -25.84065 -25.52232 -24.22839 -23.78468 -21.64089 -21.35522 -21.04436 -20.82725 -19.18898 -18.12334 -17.80517 -17.46812 -17.12692 -16.86899 -16.37690 -16.25953 -15.97417 -15.83516 -15.65912 -15.29548 -15.07553 -14.63099 -14.27125 -14.23336 -14.20476 -13.90208 -13.81078 -13.77435 -13.07112 -13.03892 -12.92120 -12.79960 -12.69622 -12.63736 -12.40002 -12.32029 -12.21907 -12.04385 -11.91889 -11.70346 -11.48484 -11.48012 -11.15621 -10.98744 -10.80218 -10.76385 -10.10466 -9.84022 -9.51043 -8.28547 -6.45575 0.76964 1.43007 1.44345 1.46256 1.57526 1.78062 1.81343 2.29109 2.48959 3.01344 3.06305 3.14609 3.33232 3.51462 3.66685 3.75997 3.88079 3.93417 4.01478 4.11910 4.16262 4.23677 4.29993 4.34407 4.41778 4.46984 4.49148 4.58497 4.69895 4.78018 4.80211 4.90499 4.91449 5.05310 5.10396 5.11429 5.12000 5.18827 5.22138 5.24149 5.30983 5.34874 5.36779 5.49024 5.68195 5.82906 5.85821 5.98245 6.07618 6.66056 6.94008 7.24114 7.53230 7.74871 8.83765 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.002054 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.654372 B =13630.573625 C =13683.748357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.187 3.813 4 H 0.095 0.905 5 N -0.678 5.678 6 C 0.057 3.943 7 C 0.491 3.509 8 O -0.595 6.595 9 N -0.706 5.706 10 C 0.267 3.733 11 C -0.554 4.554 12 H 0.088 0.912 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.987 3.013 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.253 1.253 19 C 0.171 3.829 20 N -0.324 5.324 21 N -0.349 5.349 22 C 0.184 3.816 23 N -0.457 5.457 24 C 0.090 3.910 25 C -0.139 4.139 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.036 4.036 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.343 0.657 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.411 0.589 38 H -0.016 1.016 39 H -0.017 1.017 40 H 0.268 0.732 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.051 0.949 49 H 0.107 0.893 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.196 7.002 3.778 36.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.076 3.924 4 H 0.113 0.887 5 N -0.311 5.311 6 C -0.074 4.074 7 C 0.278 3.722 8 O -0.476 6.476 9 N -0.357 5.357 10 C 0.144 3.856 11 C -0.591 4.591 12 H 0.106 0.894 13 C -0.200 4.200 14 N -0.571 5.571 15 Si 0.810 3.190 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.176 1.176 19 C -0.098 4.098 20 N -0.163 5.163 21 N -0.189 5.189 22 C -0.085 4.085 23 N -0.148 5.148 24 C -0.031 4.031 25 C -0.176 4.176 26 C -0.156 4.156 27 C -0.156 4.156 28 C -0.075 4.075 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.247 0.753 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.069 0.931 49 H 0.125 0.875 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -33.562 5.875 5.660 34.539 hybrid contribution 0.270 1.062 -1.540 1.890 sum -33.292 6.937 4.120 34.255 Atomic orbital electron populations 1.21745 0.93808 1.02665 1.01878 1.21558 0.96487 0.93471 1.03257 1.20041 0.87527 0.96587 0.88264 0.88740 1.60105 1.07653 1.50087 1.13284 1.21918 0.89450 1.05855 0.90206 1.21423 0.91924 0.75953 0.82947 1.90683 1.67712 1.51632 1.37568 1.46120 1.08720 1.72532 1.08301 1.18508 0.76634 0.93785 0.96717 1.21629 0.93474 1.52249 0.91798 0.89437 1.26132 0.96368 0.93947 1.03522 1.70155 1.01717 1.49689 1.35586 0.85122 0.77651 0.78749 0.77469 1.19546 1.21217 1.17630 1.24797 0.91407 0.95059 0.98556 1.74345 1.23835 1.20107 0.98010 1.74188 1.09466 1.09160 1.26101 1.25347 0.99493 1.01315 0.82298 1.46256 1.26929 1.31635 1.09943 1.22508 0.93061 0.97725 0.89814 1.22038 0.99079 0.93817 1.02674 1.21602 0.96963 1.02194 0.94853 1.21603 0.93884 1.00575 0.99494 1.20440 0.92063 0.94445 1.00589 0.94735 0.89941 0.91511 0.89080 0.93455 0.83785 0.85011 0.88688 0.75330 0.99774 0.99865 0.92322 0.87303 0.87312 0.87076 0.91495 0.89843 0.89441 0.88472 0.93062 0.87505 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.79 71.98 0.71 -1.13 16 2 C -0.11 -2.05 5.64 30.60 0.17 -1.88 16 3 C 0.19 3.84 2.48 44.17 0.11 3.95 16 4 H 0.10 1.21 6.57 -2.39 -0.02 1.20 16 5 N -0.68 -19.53 5.99 -499.45 -2.99 -22.52 16 6 C 0.06 1.43 6.00 85.56 0.51 1.95 16 7 C 0.49 19.66 7.86 87.66 0.69 20.35 16 8 O -0.60 -31.08 16.12 -3.03 -0.05 -31.13 16 9 N -0.71 -29.33 5.55 -466.81 -2.59 -31.92 16 10 C 0.27 14.83 5.43 85.63 0.46 15.29 16 11 C -0.55 -30.04 9.28 25.60 0.24 -29.80 16 12 H 0.09 4.21 7.60 -2.91 -0.02 4.18 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 15 Si 0.99 42.22 29.54 68.60 2.03 44.25 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 19 C 0.17 4.29 5.47 138.05 0.75 5.04 16 20 N -0.32 -11.23 12.22 -50.28 -0.61 -11.85 16 21 N -0.35 -11.34 12.22 -50.38 -0.62 -11.96 16 22 C 0.18 4.03 6.92 138.09 0.96 4.99 16 23 N -0.46 -8.23 3.03 -504.91 -1.53 -9.76 16 24 C 0.09 0.67 6.22 86.43 0.54 1.21 16 25 C -0.14 -0.59 5.54 30.54 0.17 -0.42 16 26 C -0.12 -0.26 5.67 30.38 0.17 -0.09 16 27 C -0.12 -0.75 5.68 30.50 0.17 -0.57 16 28 C -0.04 -0.44 5.55 29.90 0.17 -0.27 16 29 H 0.03 0.53 7.26 -2.38 -0.02 0.51 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.47 7.44 -2.39 -0.02 1.45 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.34 11.87 7.90 -89.70 -0.71 11.16 16 35 H 0.13 2.54 7.47 -2.39 -0.02 2.53 16 36 H 0.10 1.66 7.97 -2.39 -0.02 1.65 16 37 H 0.41 13.41 8.32 -92.71 -0.77 12.64 16 38 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 39 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 41 H 0.11 0.52 7.15 -2.39 -0.02 0.50 16 42 H 0.11 0.46 7.82 -2.39 -0.02 0.44 16 43 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.07 0.53 5.69 -2.39 -0.01 0.52 16 45 H 0.08 0.02 8.09 -2.38 -0.02 0.00 16 46 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 48 H 0.05 0.49 7.84 -2.39 -0.02 0.47 16 49 H 0.11 0.98 6.33 -2.39 -0.02 0.97 16 50 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -88.75 397.30 -0.32 -89.07 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.52 Total: 23.61 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.28 Total: 19.07 kcal Atomic # 7 Polarization: -136.80 SS G_CDS: -8.06 Total: -144.86 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.05 Total: -31.13 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -88.75 -0.32 -89.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852629044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.579 kcal (2) G-P(sol) polarization free energy of solvation -88.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds