Wall clock time and date at job start Tue Mar 31 2020 18:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47487 * 2 1 4 4 N 1.46500 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.35845 * 126.05858 * 125.00665 * 4 3 2 6 6 C 1.35722 * 107.56435 * 180.02562 * 5 4 3 7 7 N 1.40851 * 126.07638 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99634 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00650 * 354.94501 * 8 7 6 10 10 N 1.34775 * 119.99620 * 174.94623 * 8 7 6 11 11 C 1.46971 * 120.59452 * 4.79919 * 10 8 7 12 12 C 1.53819 * 108.39518 * 124.75975 * 11 10 8 13 13 H 1.09005 * 109.87938 * 289.76556 * 12 11 10 14 14 C 1.53002 * 109.53006 * 169.30693 * 12 11 10 15 15 N 1.46966 * 108.57809 * 49.63772 * 12 11 10 16 16 C 1.36939 * 120.58711 * 124.66915 * 15 12 11 17 17 H 1.07998 * 120.00559 * 323.55855 * 16 15 12 18 18 C 1.38817 * 119.99632 * 143.56843 * 16 15 12 19 19 N 1.31622 * 119.99969 * 359.31190 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 179.32008 * 18 16 15 21 21 H 1.48494 * 109.47256 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47471 * 119.99932 * 20 18 16 23 23 H 1.48502 * 109.46602 * 239.99669 * 20 18 16 24 24 C 1.46962 * 118.81609 * 304.64726 * 15 12 11 25 25 H 1.08998 * 109.75148 * 175.06050 * 24 15 12 26 26 C 1.53009 * 109.60612 * 295.48512 * 24 15 12 27 27 C 1.46969 * 120.59484 * 185.08357 * 10 8 7 28 28 C 1.40242 * 107.84845 * 359.97438 * 6 5 4 29 29 N 1.30838 * 108.34186 * 0.26550 * 28 6 5 30 30 H 1.08998 * 109.46951 * 59.99806 * 1 2 3 31 31 H 1.08992 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47181 * 300.00299 * 1 2 3 33 33 H 1.09001 * 109.47416 * 240.00055 * 2 1 3 34 34 H 1.09007 * 109.47224 * 120.00105 * 2 1 3 35 35 H 1.09001 * 109.46747 * 59.99645 * 3 2 1 36 36 H 1.08997 * 109.46742 * 299.99764 * 3 2 1 37 37 H 1.08002 * 126.21632 * 0.06233 * 5 4 3 38 38 H 0.96999 * 119.99906 * 0.02562 * 7 6 5 39 39 H 1.09002 * 109.60919 * 244.53803 * 11 10 8 40 40 H 1.08999 * 109.60738 * 5.05343 * 11 10 8 41 41 H 1.08998 * 109.46844 * 296.32877 * 14 12 11 42 42 H 1.08996 * 109.46933 * 56.32962 * 14 12 11 43 43 H 1.08998 * 109.46647 * 176.33092 * 14 12 11 44 44 H 0.96993 * 119.99940 * 185.00612 * 19 18 16 45 45 H 1.09001 * 109.46585 * 179.14740 * 26 24 15 46 46 H 1.09002 * 109.46906 * 299.14151 * 26 24 15 47 47 H 1.08996 * 109.47096 * 59.14539 * 26 24 15 48 48 H 1.08994 * 109.60860 * 354.94505 * 27 10 8 49 49 H 1.08997 * 109.60882 * 115.45927 * 27 10 8 50 50 H 1.08000 * 125.82682 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3043 2.0725 -0.9004 6 6 5.5916 1.8249 -0.5487 7 7 6.7390 2.2927 -1.2183 8 6 7.9649 1.9701 -0.7603 9 8 8.0822 1.3534 0.2811 10 7 9.0608 2.3312 -1.4567 11 6 8.9409 3.1662 -2.6602 12 6 9.8309 4.4078 -2.4803 13 1 9.4023 5.0645 -1.7231 14 6 9.9374 5.1578 -3.8096 15 7 11.1667 3.9685 -2.0532 16 6 12.2802 4.3354 -2.7608 17 1 12.2371 4.4050 -3.8377 18 6 13.4645 4.6178 -2.0939 19 7 13.5134 4.5460 -0.7806 20 14 14.9886 5.0999 -3.0605 21 1 14.6730 5.1067 -4.5115 22 1 15.4314 6.4545 -2.6434 23 1 16.0732 4.1209 -2.7949 24 6 11.2862 3.1289 -0.8530 25 1 12.3228 2.8185 -0.7223 26 6 10.8283 3.9195 0.3743 27 6 10.3968 1.8919 -1.0297 28 6 5.5762 1.0204 0.6000 29 7 4.3299 0.7882 0.9233 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9752 2.6636 -1.7422 38 1 6.6469 2.8470 -2.0089 39 1 9.2695 2.6006 -3.5321 40 1 7.9033 3.4736 -2.7902 41 1 10.4356 4.5255 -4.5445 42 1 8.9386 5.4105 -4.1652 43 1 10.5140 6.0715 -3.6660 44 1 14.3184 4.8130 -0.3100 45 1 10.9035 3.2898 1.2609 46 1 11.4618 4.7979 0.4978 47 1 9.7935 4.2339 0.2387 48 1 10.3208 1.3577 -0.0827 49 1 10.8265 1.2377 -1.7883 50 1 6.4449 0.6520 1.1255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:51 Heat of formation + Delta-G solvation = 88.084197 kcal Electronic energy + Delta-G solvation = -29870.018238 eV Core-core repulsion = 25935.509967 eV Total energy + Delta-G solvation = -3934.508271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28360 -39.83746 -37.49952 -35.68288 -34.42269 -33.91037 -32.58813 -31.50745 -31.18286 -29.08104 -27.89536 -26.40060 -26.23303 -25.10350 -23.66231 -22.56664 -21.51789 -21.17651 -20.66935 -19.68119 -18.61824 -17.87565 -17.28085 -16.19694 -15.95927 -15.65312 -15.28945 -15.02569 -14.76816 -14.44266 -14.28391 -14.04699 -13.73160 -13.55806 -13.36172 -13.07451 -12.93324 -12.73351 -12.58574 -12.30745 -11.95446 -11.78017 -11.70908 -11.52443 -11.28692 -11.23584 -10.95601 -10.84030 -10.66004 -10.62041 -10.58511 -10.52499 -10.13042 -10.01583 -9.76531 -9.72180 -9.41073 -9.33877 -8.45223 -8.22727 -7.51192 -6.50515 -5.83275 -3.36707 1.82252 2.34403 2.83554 3.02004 3.33623 3.41952 3.42956 3.71471 4.15916 4.28056 4.43235 4.50163 4.69749 4.81803 4.93950 5.06588 5.13018 5.21057 5.27694 5.36120 5.56200 5.57403 5.60074 5.61812 5.62750 5.76602 5.82965 5.88521 6.04662 6.15221 6.25494 6.29213 6.34886 6.38169 6.51342 6.69301 6.83243 6.89363 6.92163 6.98025 7.06147 7.08178 7.11433 7.28547 7.68415 7.73331 7.75777 7.84311 8.26064 8.48754 8.90514 9.20080 9.77220 10.37773 11.23982 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.002354 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.805381 B =11891.677003 C =12413.645784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.143 3.857 4 N -0.378 5.378 5 C -0.001 4.001 6 C 0.037 3.963 7 N -0.666 5.666 8 C 0.707 3.293 9 O -0.588 6.588 10 N -0.607 5.607 11 C 0.098 3.902 12 C 0.155 3.845 13 H 0.031 0.969 14 C -0.135 4.135 15 N -0.581 5.581 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.012 3.988 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.178 3.822 25 H 0.112 0.888 26 C -0.135 4.135 27 C 0.108 3.892 28 C 0.053 3.947 29 N -0.287 5.287 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.172 0.828 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.255 0.745 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.019 0.981 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 -4.301 -3.096 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.022 3.978 4 N -0.164 5.164 5 C -0.148 4.148 6 C -0.069 4.069 7 N -0.316 5.316 8 C 0.409 3.591 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.027 4.027 12 C 0.047 3.953 13 H 0.049 0.951 14 C -0.193 4.193 15 N -0.304 5.304 16 C -0.383 4.383 17 H 0.085 0.915 18 C -0.187 4.187 19 N -0.541 5.541 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.071 3.929 25 H 0.130 0.870 26 C -0.193 4.193 27 C -0.015 4.015 28 C -0.135 4.135 29 N -0.109 5.109 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.189 0.811 38 H 0.240 0.760 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -21.942 -5.335 -1.475 22.630 hybrid contribution 1.297 1.236 -1.549 2.369 sum -20.645 -4.099 -3.025 21.264 Atomic orbital electron populations 1.21708 0.94613 1.02420 1.02029 1.21823 0.96143 0.95759 1.03859 1.21667 0.74053 0.98642 1.03454 1.48317 1.05813 1.40579 1.21714 1.21724 0.89502 1.04687 0.98918 1.17543 0.85568 1.05547 0.98246 1.42146 1.02682 1.55157 1.31625 1.15727 0.79951 0.80036 0.83367 1.90743 1.84992 1.47272 1.23607 1.47200 1.05792 1.53097 1.28110 1.22436 0.98871 0.94127 0.87258 1.20857 0.88043 0.91346 0.95010 0.95094 1.21756 0.99387 1.01126 0.96984 1.44053 1.00314 1.56682 1.29327 1.19140 0.88003 1.40910 0.90199 0.91487 1.25327 0.98911 0.98994 0.95450 1.69876 1.28087 1.50297 1.05886 0.86282 0.83404 0.77981 0.79472 1.20328 1.21685 1.21704 1.20848 0.98783 0.87285 0.85963 0.87012 1.21946 0.98658 1.01594 0.97151 1.22481 0.80144 0.99164 0.99751 1.24566 0.95278 0.97860 0.95755 1.77320 1.01210 1.18691 1.13694 0.92507 0.92039 0.92319 0.91439 0.90342 0.90060 0.88972 0.81067 0.75953 0.91497 0.92315 0.92335 0.94285 0.91784 0.93488 0.95269 0.91005 0.96164 0.89935 0.92500 0.77646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.15 0.37 -0.37 16 2 C -0.14 -0.98 6.12 -26.73 -0.16 -1.15 16 3 C 0.14 1.06 6.52 -4.04 -0.03 1.04 16 4 N -0.38 -4.37 3.71 -61.02 -0.23 -4.59 16 5 C 0.00 -0.01 11.52 -16.67 -0.19 -0.21 16 6 C 0.04 0.52 6.90 -83.86 -0.58 -0.06 16 7 N -0.67 -9.55 5.39 -14.39 -0.08 -9.63 16 8 C 0.71 12.66 8.27 -86.92 -0.72 11.94 16 9 O -0.59 -12.08 12.93 5.28 0.07 -12.01 16 10 N -0.61 -10.84 2.60 -177.93 -0.46 -11.30 16 11 C 0.10 1.55 5.90 -3.36 -0.02 1.53 16 12 C 0.16 2.92 3.24 -67.25 -0.22 2.70 16 13 H 0.03 0.64 7.38 -51.93 -0.38 0.25 16 14 C -0.13 -2.23 8.07 37.16 0.30 -1.93 16 15 N -0.58 -13.19 2.68 -156.75 -0.42 -13.61 16 16 C -0.25 -6.29 8.48 -15.06 -0.13 -6.42 16 17 H 0.07 1.64 6.30 -52.49 -0.33 1.31 16 18 C 0.01 0.32 5.23 -17.43 -0.09 0.22 16 19 N -0.90 -24.21 9.68 55.49 0.54 -23.67 16 20 Si 0.90 20.60 29.56 -169.99 -5.02 15.57 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.18 4.02 2.32 -67.48 -0.16 3.87 16 25 H 0.11 2.87 6.09 -51.93 -0.32 2.55 16 26 C -0.13 -3.06 8.93 37.16 0.33 -2.73 16 27 C 0.11 2.15 5.97 -3.59 -0.02 2.13 16 28 C 0.05 0.85 10.84 -17.22 -0.19 0.66 16 29 N -0.29 -4.25 12.40 30.70 0.38 -3.87 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.40 4.64 6.30 -40.82 -0.26 4.38 16 39 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.06 0.72 5.61 -51.93 -0.29 0.43 16 41 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 44 H 0.25 6.76 8.32 -40.82 -0.34 6.42 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.81 7.08 -51.93 -0.37 1.44 16 47 H 0.02 0.44 7.00 -51.93 -0.36 0.08 16 48 H 0.08 1.67 6.96 -51.93 -0.36 1.31 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.21 3.60 5.93 -52.49 -0.31 3.29 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -30.47 387.93 -8.84 -39.31 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.96 Total: 6.72 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -1.50 Total: 11.24 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -0.27 Total: -66.68 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.47 -8.84 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.393 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds