Wall clock time and date at job start Tue Mar 31 2020 18:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47487 * 2 1 4 4 N 1.46500 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.35845 * 126.05858 * 125.00665 * 4 3 2 6 6 C 1.35722 * 107.56435 * 180.02562 * 5 4 3 7 7 N 1.40851 * 126.07638 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99634 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00650 * 354.94501 * 8 7 6 10 10 N 1.34775 * 119.99620 * 174.94623 * 8 7 6 11 11 C 1.46971 * 120.59452 * 4.79919 * 10 8 7 12 12 C 1.53819 * 108.39518 * 124.75975 * 11 10 8 13 13 H 1.09005 * 109.87938 * 289.76556 * 12 11 10 14 14 C 1.53002 * 109.53006 * 169.30693 * 12 11 10 15 15 N 1.46966 * 108.57809 * 49.63772 * 12 11 10 16 16 C 1.36939 * 120.58711 * 124.66915 * 15 12 11 17 17 H 1.07998 * 120.00559 * 323.55855 * 16 15 12 18 18 C 1.38817 * 119.99632 * 143.56843 * 16 15 12 19 19 N 1.31622 * 119.99969 * 359.31190 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 179.32008 * 18 16 15 21 21 H 1.48494 * 109.47256 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47471 * 119.99932 * 20 18 16 23 23 H 1.48502 * 109.46602 * 239.99669 * 20 18 16 24 24 C 1.46962 * 118.81609 * 304.64726 * 15 12 11 25 25 H 1.08998 * 109.75148 * 175.06050 * 24 15 12 26 26 C 1.53009 * 109.60612 * 295.48512 * 24 15 12 27 27 C 1.46969 * 120.59484 * 185.08357 * 10 8 7 28 28 C 1.40242 * 107.84845 * 359.97438 * 6 5 4 29 29 N 1.30838 * 108.34186 * 0.26550 * 28 6 5 30 30 H 1.08998 * 109.46951 * 59.99806 * 1 2 3 31 31 H 1.08992 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47181 * 300.00299 * 1 2 3 33 33 H 1.09001 * 109.47416 * 240.00055 * 2 1 3 34 34 H 1.09007 * 109.47224 * 120.00105 * 2 1 3 35 35 H 1.09001 * 109.46747 * 59.99645 * 3 2 1 36 36 H 1.08997 * 109.46742 * 299.99764 * 3 2 1 37 37 H 1.08002 * 126.21632 * 0.06233 * 5 4 3 38 38 H 0.96999 * 119.99906 * 0.02562 * 7 6 5 39 39 H 1.09002 * 109.60919 * 244.53803 * 11 10 8 40 40 H 1.08999 * 109.60738 * 5.05343 * 11 10 8 41 41 H 1.08998 * 109.46844 * 296.32877 * 14 12 11 42 42 H 1.08996 * 109.46933 * 56.32962 * 14 12 11 43 43 H 1.08998 * 109.46647 * 176.33092 * 14 12 11 44 44 H 0.96993 * 119.99940 * 185.00612 * 19 18 16 45 45 H 1.09001 * 109.46585 * 179.14740 * 26 24 15 46 46 H 1.09002 * 109.46906 * 299.14151 * 26 24 15 47 47 H 1.08996 * 109.47096 * 59.14539 * 26 24 15 48 48 H 1.08994 * 109.60860 * 354.94505 * 27 10 8 49 49 H 1.08997 * 109.60882 * 115.45927 * 27 10 8 50 50 H 1.08000 * 125.82682 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3043 2.0725 -0.9004 6 6 5.5916 1.8249 -0.5487 7 7 6.7390 2.2927 -1.2183 8 6 7.9649 1.9701 -0.7603 9 8 8.0822 1.3534 0.2811 10 7 9.0608 2.3312 -1.4567 11 6 8.9409 3.1662 -2.6602 12 6 9.8309 4.4078 -2.4803 13 1 9.4023 5.0645 -1.7231 14 6 9.9374 5.1578 -3.8096 15 7 11.1667 3.9685 -2.0532 16 6 12.2802 4.3354 -2.7608 17 1 12.2371 4.4050 -3.8377 18 6 13.4645 4.6178 -2.0939 19 7 13.5134 4.5460 -0.7806 20 14 14.9886 5.0999 -3.0605 21 1 14.6730 5.1067 -4.5115 22 1 15.4314 6.4545 -2.6434 23 1 16.0732 4.1209 -2.7949 24 6 11.2862 3.1289 -0.8530 25 1 12.3228 2.8185 -0.7223 26 6 10.8283 3.9195 0.3743 27 6 10.3968 1.8919 -1.0297 28 6 5.5762 1.0204 0.6000 29 7 4.3299 0.7882 0.9233 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9752 2.6636 -1.7422 38 1 6.6469 2.8470 -2.0089 39 1 9.2695 2.6006 -3.5321 40 1 7.9033 3.4736 -2.7902 41 1 10.4356 4.5255 -4.5445 42 1 8.9386 5.4105 -4.1652 43 1 10.5140 6.0715 -3.6660 44 1 14.3184 4.8130 -0.3100 45 1 10.9035 3.2898 1.2609 46 1 11.4618 4.7979 0.4978 47 1 9.7935 4.2339 0.2387 48 1 10.3208 1.3577 -0.0827 49 1 10.8265 1.2377 -1.7883 50 1 6.4449 0.6520 1.1255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:50 Heat of formation + Delta-G solvation = 69.978794 kcal Electronic energy + Delta-G solvation = -29870.803348 eV Core-core repulsion = 25935.509967 eV Total energy + Delta-G solvation = -3935.293380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33616 -41.17617 -39.03375 -36.47499 -35.79111 -35.27721 -34.15888 -33.04694 -32.27159 -30.14464 -29.62413 -27.75509 -27.27754 -26.48412 -25.39927 -23.38202 -22.81287 -22.15730 -21.98140 -20.99925 -20.17929 -19.15761 -18.33214 -17.78373 -17.05192 -16.97691 -16.69507 -16.22084 -15.95613 -15.71368 -15.49960 -15.32375 -15.19158 -15.03134 -14.72708 -14.40921 -14.01301 -13.74621 -13.58525 -13.43907 -13.20894 -13.00176 -12.89086 -12.85095 -12.77838 -12.45366 -12.33412 -12.25841 -12.21242 -11.94977 -11.92840 -11.71467 -11.66013 -11.51217 -11.50092 -11.39525 -10.95972 -10.39644 -10.30407 -9.71757 -8.61469 -8.30600 -7.77215 -5.31505 0.87666 1.41445 1.49703 1.53537 1.60929 1.64861 1.83451 2.42262 2.56136 2.95814 3.40213 3.57625 3.64710 3.96167 3.98954 4.15654 4.19714 4.25707 4.28951 4.37431 4.44654 4.50702 4.57083 4.63620 4.69347 4.73063 4.73648 4.77781 4.87356 4.89118 4.93935 5.02618 5.15803 5.16251 5.18383 5.23660 5.27518 5.39862 5.40866 5.46336 5.63097 5.78841 5.83113 5.84207 5.89498 6.05926 6.19049 6.56839 6.70963 7.01549 7.27779 7.57942 7.93561 8.49490 9.27974 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.002354 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.805381 B =11891.677003 C =12413.645784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.132 3.868 4 N -0.370 5.370 5 C 0.035 3.965 6 C 0.000 4.000 7 N -0.647 5.647 8 C 0.702 3.298 9 O -0.621 6.621 10 N -0.610 5.610 11 C 0.106 3.894 12 C 0.148 3.852 13 H 0.016 0.984 14 C -0.126 4.126 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.075 0.925 18 C -0.042 4.042 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.299 1.299 23 H -0.299 1.299 24 C 0.181 3.819 25 H 0.077 0.923 26 C -0.116 4.116 27 C 0.122 3.878 28 C 0.027 3.973 29 N -0.314 5.314 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.224 0.776 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.246 0.754 45 H 0.028 0.972 46 H 0.041 0.959 47 H 0.020 0.980 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.041 -3.495 -6.054 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.013 3.987 4 N -0.155 5.155 5 C -0.114 4.114 6 C -0.105 4.105 7 N -0.298 5.298 8 C 0.404 3.596 9 O -0.502 6.502 10 N -0.345 5.345 11 C -0.018 4.018 12 C 0.041 3.959 13 H 0.033 0.967 14 C -0.184 4.184 15 N -0.318 5.318 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.238 4.238 19 N -0.572 5.572 20 Si 0.786 3.214 21 H -0.189 1.189 22 H -0.226 1.226 23 H -0.227 1.227 24 C 0.074 3.926 25 H 0.095 0.905 26 C -0.175 4.175 27 C -0.002 4.002 28 C -0.159 4.159 29 N -0.138 5.138 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.151 0.849 37 H 0.240 0.760 38 H 0.259 0.741 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -25.679 -4.523 -4.473 26.456 hybrid contribution 2.229 0.976 -0.614 2.510 sum -23.450 -3.547 -5.087 24.256 Atomic orbital electron populations 1.21672 0.92624 1.02781 1.03114 1.21756 0.97761 0.95406 1.02239 1.22139 0.71552 0.99167 1.05848 1.48797 1.07225 1.38906 1.20570 1.22449 0.87919 1.02377 0.98652 1.17725 0.86656 1.07336 0.98781 1.41790 1.01434 1.54798 1.31814 1.15869 0.80844 0.79903 0.82959 1.90745 1.85623 1.48681 1.25156 1.47126 1.04944 1.53603 1.28834 1.22460 1.00684 0.92220 0.86468 1.21089 0.86256 0.92858 0.95679 0.96669 1.21678 1.01708 0.99539 0.95453 1.44244 1.01616 1.57001 1.28983 1.19429 0.88605 1.38873 0.90695 0.90745 1.25965 1.01488 1.00212 0.96144 1.70056 1.28088 1.51966 1.07076 0.85370 0.80371 0.76658 0.79026 1.18873 1.22625 1.22692 1.20611 0.97514 0.88386 0.86117 0.90500 1.21733 0.97784 1.00339 0.97604 1.22070 0.81100 0.97521 0.99550 1.24266 0.95147 0.99420 0.97097 1.77268 1.01223 1.20040 1.15252 0.90763 0.92140 0.91837 0.92134 0.92973 0.89271 0.84920 0.75971 0.74073 0.90543 0.87917 0.92628 0.89834 0.94045 0.94472 0.95273 0.93945 0.96042 0.90962 0.92140 0.80442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.91 71.98 0.71 -0.29 16 2 C -0.13 -1.62 6.12 30.59 0.19 -1.43 16 3 C 0.13 1.47 6.52 86.38 0.56 2.04 16 4 N -0.37 -7.47 3.71 -346.98 -1.29 -8.76 16 5 C 0.03 0.62 11.52 83.49 0.96 1.58 16 6 C 0.00 0.00 6.90 37.59 0.26 0.26 16 7 N -0.65 -16.92 5.39 -317.70 -1.71 -18.63 16 8 C 0.70 24.58 8.27 179.05 1.48 26.06 16 9 O -0.62 -26.21 12.93 -4.04 -0.05 -26.26 16 10 N -0.61 -21.09 2.60 -835.10 -2.17 -23.26 16 11 C 0.11 3.00 5.90 86.57 0.51 3.51 16 12 C 0.15 5.30 3.24 45.18 0.15 5.45 16 13 H 0.02 0.61 7.38 -2.38 -0.02 0.59 16 14 C -0.13 -3.82 8.07 71.98 0.58 -3.23 16 15 N -0.60 -27.04 2.68 -649.84 -1.74 -28.78 16 16 C -0.25 -12.22 8.48 84.03 0.71 -11.51 16 17 H 0.08 3.55 6.30 -2.91 -0.02 3.53 16 18 C -0.04 -2.24 5.23 84.86 0.44 -1.79 16 19 N -0.93 -51.98 9.68 21.65 0.21 -51.78 16 20 Si 0.96 43.11 29.56 68.60 2.03 45.14 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 C 0.18 8.42 2.32 45.03 0.10 8.53 16 25 H 0.08 4.15 6.09 -2.39 -0.01 4.13 16 26 C -0.12 -5.46 8.93 71.99 0.64 -4.82 16 27 C 0.12 4.93 5.97 86.41 0.52 5.44 16 28 C 0.03 0.87 10.84 85.33 0.92 1.79 16 29 N -0.31 -9.22 12.40 -56.78 -0.70 -9.92 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 0.48 8.07 -2.39 -0.02 0.46 16 37 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.42 7.77 6.30 -92.71 -0.58 7.18 16 39 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 40 H 0.10 2.00 5.61 -2.39 -0.01 1.99 16 41 H 0.05 1.72 7.06 -2.39 -0.02 1.70 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.43 7.90 -2.39 -0.02 1.41 16 44 H 0.25 13.67 8.32 -92.71 -0.77 12.90 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 2.23 7.08 -2.39 -0.02 2.21 16 47 H 0.02 0.96 7.00 -2.39 -0.02 0.94 16 48 H 0.07 3.04 6.96 -2.39 -0.02 3.03 16 49 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.18 6.70 5.93 -2.91 -0.02 6.68 16 Total: -1.00 -71.53 387.93 3.68 -67.85 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.36 Total: 22.81 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 8.75 Total: 31.58 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -7.40 Total: -141.13 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.53 3.68 -67.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.828 kcal (2) G-P(sol) polarization free energy of solvation -71.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds