Wall clock time and date at job start Tue Mar 31 2020 18:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47141 * 2 1 4 4 H 1.08998 * 109.47669 * 305.00404 * 3 2 1 5 5 C 1.52999 * 109.47333 * 184.99894 * 3 2 1 6 6 O 1.42896 * 109.47127 * 305.00312 * 5 3 2 7 7 N 1.46505 * 109.47472 * 65.00349 * 3 2 1 8 8 C 1.38627 * 120.00547 * 205.00356 * 7 3 2 9 9 C 1.39178 * 120.48290 * 359.97438 * 8 7 3 10 10 C 1.39118 * 118.26681 * 180.02562 * 9 8 7 11 11 N 1.38635 * 120.48364 * 179.97438 * 10 9 8 12 12 C 1.46959 * 111.00027 * 179.97438 * 11 10 9 13 13 C 1.53058 * 109.36419 * 183.18878 * 12 11 10 14 14 N 1.46955 * 109.36051 * 301.59955 * 13 12 11 15 15 C 1.46906 * 110.99744 * 183.18754 * 14 13 12 16 16 C 1.50703 * 109.47109 * 169.99905 * 15 14 13 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16 23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16 24 24 C 1.46959 * 110.88319 * 59.32174 * 14 13 12 25 25 C 1.46959 * 110.99966 * 303.79923 * 11 10 9 26 26 N 1.33197 * 119.03600 * 0.25195 * 10 9 8 27 27 C 1.31731 * 120.87312 * 359.48726 * 26 10 9 28 28 N 1.31751 * 121.91577 * 0.52723 * 27 26 10 29 29 H 1.08995 * 109.47635 * 59.99584 * 1 2 3 30 30 H 1.08995 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47068 * 300.00007 * 1 2 3 32 32 H 1.08996 * 109.46793 * 240.00197 * 2 1 3 33 33 H 1.09000 * 109.47026 * 120.00106 * 2 1 3 34 34 H 1.09005 * 109.46871 * 65.00211 * 5 3 2 35 35 H 1.09001 * 109.47596 * 184.99711 * 5 3 2 36 36 H 0.96707 * 113.99862 * 179.97438 * 6 5 3 37 37 H 0.97001 * 119.99602 * 24.99120 * 7 3 2 38 38 H 1.08001 * 120.86088 * 0.05049 * 9 8 7 39 39 H 1.08995 * 109.48972 * 63.22053 * 12 11 10 40 40 H 1.08998 * 109.48999 * 303.15453 * 12 11 10 41 41 H 1.08994 * 109.48935 * 181.63483 * 13 12 11 42 42 H 1.08999 * 109.48934 * 61.56553 * 13 12 11 43 43 H 1.08992 * 109.47459 * 289.99824 * 15 14 13 44 44 H 1.09004 * 109.47040 * 49.99975 * 15 14 13 45 45 H 0.97007 * 120.00076 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.48972 * 60.64434 * 24 14 13 47 47 H 1.08998 * 109.48999 * 180.71033 * 24 14 13 48 48 H 1.08999 * 109.48803 * 296.77785 * 25 11 10 49 49 H 1.09000 * 109.48812 * 56.82422 * 25 11 10 50 50 H 1.08005 * 119.04286 * 180.24196 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1293 0.6403 0.9121 7 7 1.6525 2.0975 1.2519 8 6 1.5220 3.4767 1.3011 9 6 1.7572 4.2490 0.1674 10 6 1.6133 5.6290 0.2688 11 7 1.8367 6.4422 -0.8315 12 6 1.6262 7.8566 -0.4926 13 6 1.8043 8.7116 -1.7495 14 7 3.1515 8.4989 -2.2965 15 6 3.3883 9.3606 -3.4626 16 6 4.8448 9.2998 -3.8447 17 1 5.5264 8.6825 -3.2782 18 6 5.3073 10.0323 -4.9173 19 7 6.5782 9.9788 -5.2510 20 14 4.1283 11.0994 -5.8974 21 1 4.0838 12.4605 -5.3054 22 1 4.5933 11.1868 -7.3051 23 1 2.7704 10.4992 -5.8612 24 6 3.3620 7.0846 -2.6355 25 6 3.1838 6.2292 -1.3790 26 7 1.2632 6.1581 1.4400 27 6 1.0446 5.3924 2.4894 28 7 1.1704 4.0821 2.4338 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8499 1.0377 -1.0961 35 1 3.9356 2.4654 -0.0366 36 1 5.0952 0.5956 0.8937 37 1 1.4871 1.5660 2.0463 38 1 2.0435 3.7889 -0.7668 39 1 2.3522 8.1619 0.2608 40 1 0.6177 7.9906 -0.1015 41 1 1.6772 9.7637 -1.4946 42 1 1.0605 8.4247 -2.4929 43 1 2.7789 9.0167 -4.2982 44 1 3.1200 10.3879 -3.2157 45 1 6.9035 10.4939 -6.0060 46 1 2.6360 6.7792 -3.3889 47 1 4.3706 6.9505 -3.0266 48 1 3.9278 6.5157 -0.6358 49 1 3.3106 5.1769 -1.6337 50 1 0.7583 5.8525 3.4236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895025851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:06 Heat of formation + Delta-G solvation = 24.179321 kcal Electronic energy + Delta-G solvation = -29494.383912 eV Core-core repulsion = 25557.104518 eV Total energy + Delta-G solvation = -3937.279394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17148 -39.11256 -38.38177 -36.15742 -35.52561 -33.69220 -32.63549 -31.60693 -30.94043 -30.10985 -28.79976 -28.33987 -25.43437 -24.56237 -23.90355 -22.89209 -22.44399 -21.20964 -20.89693 -19.47962 -18.44774 -17.81229 -17.49791 -16.78003 -16.08129 -15.62001 -15.55085 -15.21704 -14.95433 -14.84096 -14.55956 -14.49558 -14.41499 -14.02995 -13.92034 -13.82391 -13.66029 -13.20985 -12.97447 -12.73141 -12.36688 -12.06129 -12.01938 -11.66138 -11.53281 -11.33373 -11.13454 -11.03613 -10.94060 -10.86230 -10.67500 -10.43155 -10.36601 -10.26075 -10.12463 -9.85730 -9.31443 -9.19869 -8.60780 -8.51492 -8.17633 -7.45307 -6.09217 -4.06994 1.11915 1.42048 2.75398 3.26374 3.33946 3.35940 3.51388 3.84564 3.97988 4.23748 4.29482 4.38848 4.53096 4.62608 4.66676 4.71296 4.86307 4.98630 5.06288 5.16463 5.20783 5.23373 5.24842 5.29887 5.38434 5.41521 5.44922 5.57386 5.62547 5.65477 5.71065 5.71667 5.83487 5.88886 6.03734 6.15573 6.26469 6.39926 6.48287 6.53833 6.67658 6.83065 6.94168 7.16066 7.21295 7.25360 7.51359 7.54416 7.82707 7.96356 8.33956 8.60421 8.97968 9.52493 11.03715 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002598 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.169789 B =10774.525938 C =11778.880322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.154 3.846 4 H 0.097 0.903 5 C 0.056 3.944 6 O -0.567 6.567 7 N -0.699 5.699 8 C 0.451 3.549 9 C -0.318 4.318 10 C 0.390 3.610 11 N -0.476 5.476 12 C 0.074 3.926 13 C 0.049 3.951 14 N -0.529 5.529 15 C 0.163 3.837 16 C -0.511 4.511 17 H 0.080 0.920 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.066 3.934 25 C 0.067 3.933 26 N -0.593 5.593 27 C 0.359 3.641 28 N -0.602 5.602 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.380 0.620 37 H 0.408 0.592 38 H 0.137 0.863 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.032 0.968 43 H -0.010 1.010 44 H 0.026 0.974 45 H 0.264 0.736 46 H 0.033 0.967 47 H 0.100 0.900 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 -19.356 11.912 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.048 3.952 4 H 0.115 0.885 5 C -0.023 4.023 6 O -0.373 6.373 7 N -0.331 5.331 8 C 0.210 3.790 9 C -0.349 4.349 10 C 0.153 3.847 11 N -0.193 5.193 12 C -0.052 4.052 13 C -0.080 4.080 14 N -0.254 5.254 15 C 0.037 3.963 16 C -0.549 4.549 17 H 0.098 0.902 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.063 4.063 25 C -0.058 4.058 26 N -0.319 5.319 27 C 0.068 3.932 28 N -0.328 5.328 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.227 0.773 37 H 0.244 0.756 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.008 0.992 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.098 0.902 50 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.479 -18.970 12.447 25.428 hybrid contribution 0.085 0.189 -1.402 1.417 sum -11.395 -18.781 11.045 24.588 Atomic orbital electron populations 1.21801 0.95258 1.01825 1.02314 1.21678 0.96200 0.94566 1.03784 1.21209 0.92461 0.94353 0.87131 0.88513 1.22764 0.94135 0.94890 0.90528 1.86441 1.25525 1.71993 1.53306 1.44383 1.73457 1.02038 1.13256 1.18270 0.86414 0.85505 0.88849 1.21433 1.19521 0.93602 1.00322 1.19843 0.87469 0.90063 0.87287 1.59049 1.27835 1.08108 1.24297 1.22091 1.02346 0.83664 0.97145 1.22243 0.91144 0.99321 0.95323 1.62134 1.23953 1.05176 1.34165 1.20166 0.97897 0.92025 0.86259 1.21011 0.92034 1.28321 1.13537 0.90174 1.24892 0.94955 0.96455 0.96974 1.69889 1.13679 1.41964 1.28341 0.86866 0.81833 0.81433 0.79658 1.20112 1.21210 1.19241 1.22073 1.02864 0.87888 0.93479 1.22433 0.85090 1.00414 0.97899 1.68424 1.23211 1.40857 0.99361 1.24413 0.88020 0.84497 0.96254 1.67933 1.24803 1.13163 1.26947 0.92592 0.92444 0.92449 0.90326 0.90361 0.92464 0.92990 0.77297 0.75575 0.84483 0.92095 0.89812 0.90257 0.95025 0.99197 0.95622 0.92628 0.94877 0.88213 0.92619 0.90226 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.80 37.16 0.36 -0.60 16 2 C -0.12 -0.77 5.19 -26.73 -0.14 -0.91 16 3 C 0.15 1.14 2.07 -67.93 -0.14 1.00 16 4 H 0.10 0.72 6.51 -51.93 -0.34 0.38 16 5 C 0.06 0.40 6.81 37.16 0.25 0.66 16 6 O -0.57 -4.26 12.83 -35.23 -0.45 -4.71 16 7 N -0.70 -6.48 4.63 -53.84 -0.25 -6.73 16 8 C 0.45 5.41 7.68 -154.71 -1.19 4.22 16 9 C -0.32 -3.98 8.06 -38.91 -0.31 -4.30 16 10 C 0.39 5.65 6.40 -154.70 -0.99 4.66 16 11 N -0.48 -7.24 4.73 -172.94 -0.82 -8.05 16 12 C 0.07 1.16 4.80 -3.76 -0.02 1.14 16 13 C 0.05 0.84 5.61 -3.76 -0.02 0.82 16 14 N -0.53 -10.85 4.70 -235.91 -1.11 -11.96 16 15 C 0.16 3.86 3.79 -4.97 -0.02 3.85 16 16 C -0.51 -14.14 9.03 -34.44 -0.31 -14.45 16 17 H 0.08 2.40 7.37 -52.48 -0.39 2.01 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 20 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 24 C 0.07 1.20 5.43 -3.77 -0.02 1.18 16 25 C 0.07 1.02 5.38 -3.77 -0.02 1.00 16 26 N -0.59 -8.49 8.87 -13.88 -0.12 -8.62 16 27 C 0.36 4.46 12.28 -92.25 -1.13 3.33 16 28 N -0.60 -7.69 10.47 -13.88 -0.15 -7.84 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.54 7.73 -51.93 -0.40 0.14 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.44 7.81 -51.93 -0.41 0.04 16 36 H 0.38 1.54 9.12 45.56 0.42 1.96 16 37 H 0.41 3.70 8.73 -40.82 -0.36 3.35 16 38 H 0.14 1.51 5.53 -52.49 -0.29 1.22 16 39 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 40 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16 41 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H -0.01 -0.23 7.18 -51.93 -0.37 -0.61 16 44 H 0.03 0.61 7.45 -51.93 -0.39 0.23 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.10 1.99 6.79 -51.93 -0.35 1.64 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.01 6.86 -51.93 -0.36 0.66 16 50 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -32.55 392.36 -12.10 -44.65 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.43 Total: 3.70 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -3.79 Total: 3.45 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -1.67 Total: -69.51 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.45 Total: -4.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.55 -12.10 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895025851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.831 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds