Wall clock time and date at job start Tue Mar 31 2020 18:55:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52991 * 109.47141 * 2 1
4 4 H 1.08998 * 109.47669 * 305.00404 * 3 2 1
5 5 C 1.52999 * 109.47333 * 184.99894 * 3 2 1
6 6 O 1.42896 * 109.47127 * 305.00312 * 5 3 2
7 7 N 1.46505 * 109.47472 * 65.00349 * 3 2 1
8 8 C 1.38627 * 120.00547 * 205.00356 * 7 3 2
9 9 C 1.39178 * 120.48290 * 359.97438 * 8 7 3
10 10 C 1.39118 * 118.26681 * 180.02562 * 9 8 7
11 11 N 1.38635 * 120.48364 * 179.97438 * 10 9 8
12 12 C 1.46959 * 111.00027 * 179.97438 * 11 10 9
13 13 C 1.53058 * 109.36419 * 183.18878 * 12 11 10
14 14 N 1.46955 * 109.36051 * 301.59955 * 13 12 11
15 15 C 1.46906 * 110.99744 * 183.18754 * 14 13 12
16 16 C 1.50703 * 109.47109 * 169.99905 * 15 14 13
17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14
18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14
19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15
21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16
22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16
23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16
24 24 C 1.46959 * 110.88319 * 59.32174 * 14 13 12
25 25 C 1.46959 * 110.99966 * 303.79923 * 11 10 9
26 26 N 1.33197 * 119.03600 * 0.25195 * 10 9 8
27 27 C 1.31731 * 120.87312 * 359.48726 * 26 10 9
28 28 N 1.31751 * 121.91577 * 0.52723 * 27 26 10
29 29 H 1.08995 * 109.47635 * 59.99584 * 1 2 3
30 30 H 1.08995 * 109.47224 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47068 * 300.00007 * 1 2 3
32 32 H 1.08996 * 109.46793 * 240.00197 * 2 1 3
33 33 H 1.09000 * 109.47026 * 120.00106 * 2 1 3
34 34 H 1.09005 * 109.46871 * 65.00211 * 5 3 2
35 35 H 1.09001 * 109.47596 * 184.99711 * 5 3 2
36 36 H 0.96707 * 113.99862 * 179.97438 * 6 5 3
37 37 H 0.97001 * 119.99602 * 24.99120 * 7 3 2
38 38 H 1.08001 * 120.86088 * 0.05049 * 9 8 7
39 39 H 1.08995 * 109.48972 * 63.22053 * 12 11 10
40 40 H 1.08998 * 109.48999 * 303.15453 * 12 11 10
41 41 H 1.08994 * 109.48935 * 181.63483 * 13 12 11
42 42 H 1.08999 * 109.48934 * 61.56553 * 13 12 11
43 43 H 1.08992 * 109.47459 * 289.99824 * 15 14 13
44 44 H 1.09004 * 109.47040 * 49.99975 * 15 14 13
45 45 H 0.97007 * 120.00076 * 179.97438 * 19 18 16
46 46 H 1.08995 * 109.48972 * 60.64434 * 24 14 13
47 47 H 1.08998 * 109.48999 * 180.71033 * 24 14 13
48 48 H 1.08999 * 109.48803 * 296.77785 * 25 11 10
49 49 H 1.09000 * 109.48812 * 56.82422 * 25 11 10
50 50 H 1.08005 * 119.04286 * 180.24196 * 27 26 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8417
5 6 3.5648 1.4443 -0.1257
6 8 4.1293 0.6403 0.9121
7 7 1.6525 2.0975 1.2519
8 6 1.5220 3.4767 1.3011
9 6 1.7572 4.2490 0.1674
10 6 1.6133 5.6290 0.2688
11 7 1.8367 6.4422 -0.8315
12 6 1.6262 7.8566 -0.4926
13 6 1.8043 8.7116 -1.7495
14 7 3.1515 8.4989 -2.2965
15 6 3.3883 9.3606 -3.4626
16 6 4.8448 9.2998 -3.8447
17 1 5.5264 8.6825 -3.2782
18 6 5.3073 10.0323 -4.9173
19 7 6.5782 9.9788 -5.2510
20 14 4.1283 11.0994 -5.8974
21 1 4.0838 12.4605 -5.3054
22 1 4.5933 11.1868 -7.3051
23 1 2.7704 10.4992 -5.8612
24 6 3.3620 7.0846 -2.6355
25 6 3.1838 6.2292 -1.3790
26 7 1.2632 6.1581 1.4400
27 6 1.0446 5.3924 2.4894
28 7 1.1704 4.0821 2.4338
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8900
34 1 3.8499 1.0377 -1.0961
35 1 3.9356 2.4654 -0.0366
36 1 5.0952 0.5956 0.8937
37 1 1.4871 1.5660 2.0463
38 1 2.0435 3.7889 -0.7668
39 1 2.3522 8.1619 0.2608
40 1 0.6177 7.9906 -0.1015
41 1 1.6772 9.7637 -1.4946
42 1 1.0605 8.4247 -2.4929
43 1 2.7789 9.0167 -4.2982
44 1 3.1200 10.3879 -3.2157
45 1 6.9035 10.4939 -6.0060
46 1 2.6360 6.7792 -3.3889
47 1 4.3706 6.9505 -3.0266
48 1 3.9278 6.5157 -0.6358
49 1 3.3106 5.1769 -1.6337
50 1 0.7583 5.8525 3.4236
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000895025851.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:06
Heat of formation + Delta-G solvation = 24.179321 kcal
Electronic energy + Delta-G solvation = -29494.383912 eV
Core-core repulsion = 25557.104518 eV
Total energy + Delta-G solvation = -3937.279394 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.17148 -39.11256 -38.38177 -36.15742 -35.52561 -33.69220 -32.63549 -31.60693
-30.94043 -30.10985 -28.79976 -28.33987 -25.43437 -24.56237 -23.90355 -22.89209
-22.44399 -21.20964 -20.89693 -19.47962 -18.44774 -17.81229 -17.49791 -16.78003
-16.08129 -15.62001 -15.55085 -15.21704 -14.95433 -14.84096 -14.55956 -14.49558
-14.41499 -14.02995 -13.92034 -13.82391 -13.66029 -13.20985 -12.97447 -12.73141
-12.36688 -12.06129 -12.01938 -11.66138 -11.53281 -11.33373 -11.13454 -11.03613
-10.94060 -10.86230 -10.67500 -10.43155 -10.36601 -10.26075 -10.12463 -9.85730
-9.31443 -9.19869 -8.60780 -8.51492 -8.17633 -7.45307 -6.09217 -4.06994
1.11915 1.42048 2.75398 3.26374 3.33946 3.35940 3.51388 3.84564
3.97988 4.23748 4.29482 4.38848 4.53096 4.62608 4.66676 4.71296
4.86307 4.98630 5.06288 5.16463 5.20783 5.23373 5.24842 5.29887
5.38434 5.41521 5.44922 5.57386 5.62547 5.65477 5.71065 5.71667
5.83487 5.88886 6.03734 6.15573 6.26469 6.39926 6.48287 6.53833
6.67658 6.83065 6.94168 7.16066 7.21295 7.25360 7.51359 7.54416
7.82707 7.96356 8.33956 8.60421 8.97968 9.52493 11.03715
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015025 B = 0.002598 C = 0.002377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.169789 B =10774.525938 C =11778.880322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.124 4.124
3 C 0.154 3.846
4 H 0.097 0.903
5 C 0.056 3.944
6 O -0.567 6.567
7 N -0.699 5.699
8 C 0.451 3.549
9 C -0.318 4.318
10 C 0.390 3.610
11 N -0.476 5.476
12 C 0.074 3.926
13 C 0.049 3.951
14 N -0.529 5.529
15 C 0.163 3.837
16 C -0.511 4.511
17 H 0.080 0.920
18 C 0.069 3.931
19 N -0.900 5.900
20 Si 0.875 3.125
21 H -0.275 1.275
22 H -0.286 1.286
23 H -0.268 1.268
24 C 0.066 3.934
25 C 0.067 3.933
26 N -0.593 5.593
27 C 0.359 3.641
28 N -0.602 5.602
29 H 0.055 0.945
30 H 0.056 0.944
31 H 0.056 0.944
32 H 0.078 0.922
33 H 0.078 0.922
34 H 0.057 0.943
35 H 0.052 0.948
36 H 0.380 0.620
37 H 0.408 0.592
38 H 0.137 0.863
39 H 0.061 0.939
40 H 0.084 0.916
41 H 0.079 0.921
42 H 0.032 0.968
43 H -0.010 1.010
44 H 0.026 0.974
45 H 0.264 0.736
46 H 0.033 0.967
47 H 0.100 0.900
48 H 0.055 0.945
49 H 0.079 0.921
50 H 0.192 0.808
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.826 -19.356 11.912 25.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.162 4.162
3 C 0.048 3.952
4 H 0.115 0.885
5 C -0.023 4.023
6 O -0.373 6.373
7 N -0.331 5.331
8 C 0.210 3.790
9 C -0.349 4.349
10 C 0.153 3.847
11 N -0.193 5.193
12 C -0.052 4.052
13 C -0.080 4.080
14 N -0.254 5.254
15 C 0.037 3.963
16 C -0.549 4.549
17 H 0.098 0.902
18 C -0.133 4.133
19 N -0.539 5.539
20 Si 0.702 3.298
21 H -0.201 1.201
22 H -0.212 1.212
23 H -0.192 1.192
24 C -0.063 4.063
25 C -0.058 4.058
26 N -0.319 5.319
27 C 0.068 3.932
28 N -0.328 5.328
29 H 0.074 0.926
30 H 0.076 0.924
31 H 0.076 0.924
32 H 0.097 0.903
33 H 0.096 0.904
34 H 0.075 0.925
35 H 0.070 0.930
36 H 0.227 0.773
37 H 0.244 0.756
38 H 0.155 0.845
39 H 0.079 0.921
40 H 0.102 0.898
41 H 0.097 0.903
42 H 0.050 0.950
43 H 0.008 0.992
44 H 0.044 0.956
45 H 0.074 0.926
46 H 0.051 0.949
47 H 0.118 0.882
48 H 0.074 0.926
49 H 0.098 0.902
50 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges -11.479 -18.970 12.447 25.428
hybrid contribution 0.085 0.189 -1.402 1.417
sum -11.395 -18.781 11.045 24.588
Atomic orbital electron populations
1.21801 0.95258 1.01825 1.02314 1.21678 0.96200 0.94566 1.03784
1.21209 0.92461 0.94353 0.87131 0.88513 1.22764 0.94135 0.94890
0.90528 1.86441 1.25525 1.71993 1.53306 1.44383 1.73457 1.02038
1.13256 1.18270 0.86414 0.85505 0.88849 1.21433 1.19521 0.93602
1.00322 1.19843 0.87469 0.90063 0.87287 1.59049 1.27835 1.08108
1.24297 1.22091 1.02346 0.83664 0.97145 1.22243 0.91144 0.99321
0.95323 1.62134 1.23953 1.05176 1.34165 1.20166 0.97897 0.92025
0.86259 1.21011 0.92034 1.28321 1.13537 0.90174 1.24892 0.94955
0.96455 0.96974 1.69889 1.13679 1.41964 1.28341 0.86866 0.81833
0.81433 0.79658 1.20112 1.21210 1.19241 1.22073 1.02864 0.87888
0.93479 1.22433 0.85090 1.00414 0.97899 1.68424 1.23211 1.40857
0.99361 1.24413 0.88020 0.84497 0.96254 1.67933 1.24803 1.13163
1.26947 0.92592 0.92444 0.92449 0.90326 0.90361 0.92464 0.92990
0.77297 0.75575 0.84483 0.92095 0.89812 0.90257 0.95025 0.99197
0.95622 0.92628 0.94877 0.88213 0.92619 0.90226 0.79116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.97 9.80 37.16 0.36 -0.60 16
2 C -0.12 -0.77 5.19 -26.73 -0.14 -0.91 16
3 C 0.15 1.14 2.07 -67.93 -0.14 1.00 16
4 H 0.10 0.72 6.51 -51.93 -0.34 0.38 16
5 C 0.06 0.40 6.81 37.16 0.25 0.66 16
6 O -0.57 -4.26 12.83 -35.23 -0.45 -4.71 16
7 N -0.70 -6.48 4.63 -53.84 -0.25 -6.73 16
8 C 0.45 5.41 7.68 -154.71 -1.19 4.22 16
9 C -0.32 -3.98 8.06 -38.91 -0.31 -4.30 16
10 C 0.39 5.65 6.40 -154.70 -0.99 4.66 16
11 N -0.48 -7.24 4.73 -172.94 -0.82 -8.05 16
12 C 0.07 1.16 4.80 -3.76 -0.02 1.14 16
13 C 0.05 0.84 5.61 -3.76 -0.02 0.82 16
14 N -0.53 -10.85 4.70 -235.91 -1.11 -11.96 16
15 C 0.16 3.86 3.79 -4.97 -0.02 3.85 16
16 C -0.51 -14.14 9.03 -34.44 -0.31 -14.45 16
17 H 0.08 2.40 7.37 -52.48 -0.39 2.01 16
18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
19 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16
20 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16
21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16
23 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16
24 C 0.07 1.20 5.43 -3.77 -0.02 1.18 16
25 C 0.07 1.02 5.38 -3.77 -0.02 1.00 16
26 N -0.59 -8.49 8.87 -13.88 -0.12 -8.62 16
27 C 0.36 4.46 12.28 -92.25 -1.13 3.33 16
28 N -0.60 -7.69 10.47 -13.88 -0.15 -7.84 16
29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16
32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
33 H 0.08 0.54 7.73 -51.93 -0.40 0.14 16
34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
35 H 0.05 0.44 7.81 -51.93 -0.41 0.04 16
36 H 0.38 1.54 9.12 45.56 0.42 1.96 16
37 H 0.41 3.70 8.73 -40.82 -0.36 3.35 16
38 H 0.14 1.51 5.53 -52.49 -0.29 1.22 16
39 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16
40 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16
41 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16
42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
43 H -0.01 -0.23 7.18 -51.93 -0.37 -0.61 16
44 H 0.03 0.61 7.45 -51.93 -0.39 0.23 16
45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
47 H 0.10 1.99 6.79 -51.93 -0.35 1.64 16
48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
49 H 0.08 1.01 6.86 -51.93 -0.36 0.66 16
50 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16
LS Contribution 392.36 15.07 5.91 5.91
Total: -1.00 -32.55 392.36 -12.10 -44.65
By element:
Atomic # 1 Polarization: 11.12 SS G_CDS: -7.43 Total: 3.70 kcal
Atomic # 6 Polarization: 7.25 SS G_CDS: -3.79 Total: 3.45 kcal
Atomic # 7 Polarization: -67.83 SS G_CDS: -1.67 Total: -69.51 kcal
Atomic # 8 Polarization: -4.26 SS G_CDS: -0.45 Total: -4.71 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -32.55 -12.10 -44.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895025851.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.831 kcal
(2) G-P(sol) polarization free energy of solvation -32.549 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.282 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds