Wall clock time and date at job start Tue Mar 31 2020 18:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47141 * 2 1 4 4 H 1.08998 * 109.47669 * 305.00404 * 3 2 1 5 5 C 1.52999 * 109.47333 * 184.99894 * 3 2 1 6 6 O 1.42896 * 109.47127 * 305.00312 * 5 3 2 7 7 N 1.46505 * 109.47472 * 65.00349 * 3 2 1 8 8 C 1.38627 * 120.00547 * 205.00356 * 7 3 2 9 9 C 1.39178 * 120.48290 * 359.97438 * 8 7 3 10 10 C 1.39118 * 118.26681 * 180.02562 * 9 8 7 11 11 N 1.38635 * 120.48364 * 179.97438 * 10 9 8 12 12 C 1.46959 * 111.00027 * 179.97438 * 11 10 9 13 13 C 1.53058 * 109.36419 * 183.18878 * 12 11 10 14 14 N 1.46955 * 109.36051 * 301.59955 * 13 12 11 15 15 C 1.46906 * 110.99744 * 183.18754 * 14 13 12 16 16 C 1.50703 * 109.47109 * 169.99905 * 15 14 13 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16 23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16 24 24 C 1.46959 * 110.88319 * 59.32174 * 14 13 12 25 25 C 1.46959 * 110.99966 * 303.79923 * 11 10 9 26 26 N 1.33197 * 119.03600 * 0.25195 * 10 9 8 27 27 C 1.31731 * 120.87312 * 359.48726 * 26 10 9 28 28 N 1.31751 * 121.91577 * 0.52723 * 27 26 10 29 29 H 1.08995 * 109.47635 * 59.99584 * 1 2 3 30 30 H 1.08995 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47068 * 300.00007 * 1 2 3 32 32 H 1.08996 * 109.46793 * 240.00197 * 2 1 3 33 33 H 1.09000 * 109.47026 * 120.00106 * 2 1 3 34 34 H 1.09005 * 109.46871 * 65.00211 * 5 3 2 35 35 H 1.09001 * 109.47596 * 184.99711 * 5 3 2 36 36 H 0.96707 * 113.99862 * 179.97438 * 6 5 3 37 37 H 0.97001 * 119.99602 * 24.99120 * 7 3 2 38 38 H 1.08001 * 120.86088 * 0.05049 * 9 8 7 39 39 H 1.08995 * 109.48972 * 63.22053 * 12 11 10 40 40 H 1.08998 * 109.48999 * 303.15453 * 12 11 10 41 41 H 1.08994 * 109.48935 * 181.63483 * 13 12 11 42 42 H 1.08999 * 109.48934 * 61.56553 * 13 12 11 43 43 H 1.08992 * 109.47459 * 289.99824 * 15 14 13 44 44 H 1.09004 * 109.47040 * 49.99975 * 15 14 13 45 45 H 0.97007 * 120.00076 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.48972 * 60.64434 * 24 14 13 47 47 H 1.08998 * 109.48999 * 180.71033 * 24 14 13 48 48 H 1.08999 * 109.48803 * 296.77785 * 25 11 10 49 49 H 1.09000 * 109.48812 * 56.82422 * 25 11 10 50 50 H 1.08005 * 119.04286 * 180.24196 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1293 0.6403 0.9121 7 7 1.6525 2.0975 1.2519 8 6 1.5220 3.4767 1.3011 9 6 1.7572 4.2490 0.1674 10 6 1.6133 5.6290 0.2688 11 7 1.8367 6.4422 -0.8315 12 6 1.6262 7.8566 -0.4926 13 6 1.8043 8.7116 -1.7495 14 7 3.1515 8.4989 -2.2965 15 6 3.3883 9.3606 -3.4626 16 6 4.8448 9.2998 -3.8447 17 1 5.5264 8.6825 -3.2782 18 6 5.3073 10.0323 -4.9173 19 7 6.5782 9.9788 -5.2510 20 14 4.1283 11.0994 -5.8974 21 1 4.0838 12.4605 -5.3054 22 1 4.5933 11.1868 -7.3051 23 1 2.7704 10.4992 -5.8612 24 6 3.3620 7.0846 -2.6355 25 6 3.1838 6.2292 -1.3790 26 7 1.2632 6.1581 1.4400 27 6 1.0446 5.3924 2.4894 28 7 1.1704 4.0821 2.4338 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8499 1.0377 -1.0961 35 1 3.9356 2.4654 -0.0366 36 1 5.0952 0.5956 0.8937 37 1 1.4871 1.5660 2.0463 38 1 2.0435 3.7889 -0.7668 39 1 2.3522 8.1619 0.2608 40 1 0.6177 7.9906 -0.1015 41 1 1.6772 9.7637 -1.4946 42 1 1.0605 8.4247 -2.4929 43 1 2.7789 9.0167 -4.2982 44 1 3.1200 10.3879 -3.2157 45 1 6.9035 10.4939 -6.0060 46 1 2.6360 6.7792 -3.3889 47 1 4.3706 6.9505 -3.0266 48 1 3.9278 6.5157 -0.6358 49 1 3.3106 5.1769 -1.6337 50 1 0.7583 5.8525 3.4236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895025851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:05 Heat of formation + Delta-G solvation = 0.016226 kcal Electronic energy + Delta-G solvation = -29495.431703 eV Core-core repulsion = 25557.104518 eV Total energy + Delta-G solvation = -3938.327185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17256 -40.26130 -39.18292 -37.20267 -36.54573 -34.73851 -34.35666 -32.74026 -32.21200 -31.13528 -30.01125 -29.44119 -27.00100 -25.59118 -24.57647 -24.07873 -23.63310 -22.79114 -21.64601 -20.84359 -19.33945 -19.00780 -18.59403 -18.25013 -17.01137 -16.64860 -16.48228 -16.37076 -16.10231 -16.00228 -15.81416 -15.76806 -15.37151 -15.19577 -15.09895 -14.91339 -14.71213 -14.41273 -14.26970 -13.67132 -13.56263 -13.26139 -13.22493 -12.88976 -12.71875 -12.47774 -12.30711 -12.23820 -12.12039 -11.89902 -11.84978 -11.81311 -11.70894 -11.51682 -11.40144 -11.12899 -10.92210 -10.77098 -10.20504 -9.60219 -9.09416 -9.05692 -8.27509 -6.30856 0.13084 0.44038 1.36893 1.37439 1.48075 1.96839 2.35237 2.41322 2.97369 3.05181 3.15869 3.34264 3.38282 3.61658 3.72443 3.84787 3.97492 4.02074 4.07248 4.14812 4.19594 4.26171 4.38355 4.43544 4.49319 4.52190 4.55032 4.57072 4.63843 4.73729 4.78956 4.81842 4.88729 4.90312 4.93652 5.02938 5.06644 5.11180 5.16731 5.29043 5.39886 5.46241 5.53836 5.75703 5.94011 6.07690 6.30942 6.33636 6.61397 6.64237 6.74885 6.84141 7.32909 7.37616 8.88740 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002598 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.169789 B =10774.525938 C =11778.880322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.149 3.851 4 H 0.100 0.900 5 C 0.058 3.942 6 O -0.581 6.581 7 N -0.688 5.688 8 C 0.448 3.552 9 C -0.316 4.316 10 C 0.372 3.628 11 N -0.478 5.478 12 C 0.086 3.914 13 C 0.051 3.949 14 N -0.547 5.547 15 C 0.173 3.827 16 C -0.515 4.515 17 H 0.040 0.960 18 C 0.010 3.990 19 N -0.947 5.947 20 Si 0.945 3.055 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.251 1.251 24 C 0.070 3.930 25 C 0.080 3.920 26 N -0.612 5.612 27 C 0.355 3.645 28 N -0.612 5.612 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.394 0.606 37 H 0.409 0.591 38 H 0.151 0.849 39 H 0.047 0.953 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.036 0.964 43 H -0.010 1.010 44 H 0.030 0.970 45 H 0.267 0.733 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.040 0.960 49 H 0.107 0.893 50 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -20.334 12.041 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.044 3.956 4 H 0.118 0.882 5 C -0.021 4.021 6 O -0.389 6.389 7 N -0.319 5.319 8 C 0.205 3.795 9 C -0.347 4.347 10 C 0.136 3.864 11 N -0.195 5.195 12 C -0.041 4.041 13 C -0.077 4.077 14 N -0.272 5.272 15 C 0.046 3.954 16 C -0.553 4.553 17 H 0.059 0.941 18 C -0.188 4.188 19 N -0.588 5.588 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.175 1.175 24 C -0.059 4.059 25 C -0.045 4.045 26 N -0.338 5.338 27 C 0.065 3.935 28 N -0.339 5.339 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.243 0.757 37 H 0.246 0.754 38 H 0.168 0.832 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.008 0.992 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.125 0.875 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.450 -19.994 12.602 27.193 hybrid contribution 0.759 0.335 -1.320 1.559 sum -12.691 -19.659 11.282 25.977 Atomic orbital electron populations 1.21782 0.95300 1.02228 1.01689 1.21623 0.96015 0.93594 1.04162 1.21415 0.92895 0.94978 0.86291 0.88188 1.22739 0.93716 0.94247 0.91423 1.86403 1.27008 1.71906 1.53576 1.44517 1.72263 1.01082 1.14060 1.18461 0.86037 0.86468 0.88581 1.21519 1.19166 0.92933 1.01069 1.19923 0.88578 0.90608 0.87312 1.59070 1.27428 1.07843 1.25174 1.21928 1.02514 0.83898 0.95740 1.22294 0.89194 1.00348 0.95849 1.62035 1.26442 1.05883 1.32829 1.19922 0.95042 0.92972 0.87482 1.21225 0.93687 1.27331 1.13077 0.94135 1.25802 0.96684 0.98032 0.98240 1.70039 1.15934 1.43447 1.29331 0.85742 0.79940 0.79573 0.77846 1.19137 1.20825 1.17510 1.21977 1.01350 0.87384 0.95154 1.22260 0.85225 1.01129 0.95911 1.68413 1.24022 1.41568 0.99759 1.25004 0.87260 0.84489 0.96767 1.68018 1.25162 1.13414 1.27282 0.92711 0.91585 0.93517 0.88946 0.90901 0.90522 0.94471 0.75668 0.75388 0.83166 0.93491 0.88623 0.89430 0.94598 0.99218 0.95210 0.92435 0.94607 0.90839 0.94109 0.87528 0.76307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.80 71.98 0.71 -0.93 16 2 C -0.12 -1.19 5.19 30.59 0.16 -1.03 16 3 C 0.15 1.92 2.07 44.99 0.09 2.02 16 4 H 0.10 1.26 6.51 -2.39 -0.02 1.24 16 5 C 0.06 0.73 6.81 71.98 0.49 1.22 16 6 O -0.58 -7.72 12.83 -148.98 -1.91 -9.63 16 7 N -0.69 -11.69 4.63 -324.26 -1.50 -13.19 16 8 C 0.45 10.07 7.68 132.97 1.02 11.09 16 9 C -0.32 -7.44 8.06 22.71 0.18 -7.26 16 10 C 0.37 10.30 6.40 132.94 0.85 11.16 16 11 N -0.48 -14.00 4.73 -701.05 -3.32 -17.31 16 12 C 0.09 2.60 4.80 86.31 0.41 3.02 16 13 C 0.05 1.72 5.61 86.31 0.48 2.20 16 14 N -0.55 -22.42 4.70 -900.28 -4.23 -26.65 16 15 C 0.17 8.16 3.79 85.56 0.32 8.49 16 16 C -0.51 -29.22 9.03 25.60 0.23 -28.99 16 17 H 0.04 2.55 7.37 -2.91 -0.02 2.53 16 18 C 0.01 0.57 5.47 84.66 0.46 1.03 16 19 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16 20 Si 0.95 43.44 27.47 68.60 1.88 45.33 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 24 C 0.07 2.58 5.43 86.31 0.47 3.05 16 25 C 0.08 2.41 5.38 86.31 0.46 2.87 16 26 N -0.61 -16.79 8.87 -197.84 -1.75 -18.55 16 27 C 0.36 8.30 12.28 180.92 2.22 10.53 16 28 N -0.61 -14.75 10.47 -197.82 -2.07 -16.82 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 7.75 -2.39 -0.02 0.58 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.86 7.73 -2.39 -0.02 0.84 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.66 16 35 H 0.04 0.58 7.81 -2.39 -0.02 0.56 16 36 H 0.39 2.58 9.12 -74.05 -0.68 1.91 16 37 H 0.41 6.84 8.73 -92.71 -0.81 6.03 16 38 H 0.15 3.02 5.53 -2.91 -0.02 3.00 16 39 H 0.05 1.55 8.06 -2.39 -0.02 1.53 16 40 H 0.10 2.68 7.85 -2.39 -0.02 2.66 16 41 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H -0.01 -0.46 7.18 -2.39 -0.02 -0.48 16 44 H 0.03 1.38 7.45 -2.38 -0.02 1.37 16 45 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 3.07 6.79 -2.39 -0.02 3.06 16 48 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.11 2.58 6.86 -2.39 -0.02 2.56 16 50 H 0.22 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -70.69 392.36 -4.61 -75.31 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.58 Total: 21.18 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 8.57 Total: 18.45 kcal Atomic # 7 Polarization: -138.04 SS G_CDS: -12.58 Total: -150.62 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -1.91 Total: -9.63 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -70.69 -4.61 -75.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895025851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.324 kcal (2) G-P(sol) polarization free energy of solvation -70.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds