Wall clock time and date at job start Tue Mar 31 2020 18:55:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52991 * 109.47141 * 2 1
4 4 H 1.08998 * 109.47669 * 305.00404 * 3 2 1
5 5 C 1.52999 * 109.47333 * 184.99894 * 3 2 1
6 6 O 1.42896 * 109.47127 * 305.00312 * 5 3 2
7 7 N 1.46505 * 109.47472 * 65.00349 * 3 2 1
8 8 C 1.38627 * 120.00547 * 205.00356 * 7 3 2
9 9 C 1.39178 * 120.48290 * 359.97438 * 8 7 3
10 10 C 1.39118 * 118.26681 * 180.02562 * 9 8 7
11 11 N 1.38635 * 120.48364 * 179.97438 * 10 9 8
12 12 C 1.46959 * 111.00027 * 179.97438 * 11 10 9
13 13 C 1.53058 * 109.36419 * 183.18878 * 12 11 10
14 14 N 1.46955 * 109.36051 * 301.59955 * 13 12 11
15 15 C 1.46906 * 110.99744 * 183.18754 * 14 13 12
16 16 C 1.50703 * 109.47109 * 169.99905 * 15 14 13
17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14
18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14
19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15
21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16
22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16
23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16
24 24 C 1.46959 * 110.88319 * 59.32174 * 14 13 12
25 25 C 1.46959 * 110.99966 * 303.79923 * 11 10 9
26 26 N 1.33197 * 119.03600 * 0.25195 * 10 9 8
27 27 C 1.31731 * 120.87312 * 359.48726 * 26 10 9
28 28 N 1.31751 * 121.91577 * 0.52723 * 27 26 10
29 29 H 1.08995 * 109.47635 * 59.99584 * 1 2 3
30 30 H 1.08995 * 109.47224 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47068 * 300.00007 * 1 2 3
32 32 H 1.08996 * 109.46793 * 240.00197 * 2 1 3
33 33 H 1.09000 * 109.47026 * 120.00106 * 2 1 3
34 34 H 1.09005 * 109.46871 * 65.00211 * 5 3 2
35 35 H 1.09001 * 109.47596 * 184.99711 * 5 3 2
36 36 H 0.96707 * 113.99862 * 179.97438 * 6 5 3
37 37 H 0.97001 * 119.99602 * 24.99120 * 7 3 2
38 38 H 1.08001 * 120.86088 * 0.05049 * 9 8 7
39 39 H 1.08995 * 109.48972 * 63.22053 * 12 11 10
40 40 H 1.08998 * 109.48999 * 303.15453 * 12 11 10
41 41 H 1.08994 * 109.48935 * 181.63483 * 13 12 11
42 42 H 1.08999 * 109.48934 * 61.56553 * 13 12 11
43 43 H 1.08992 * 109.47459 * 289.99824 * 15 14 13
44 44 H 1.09004 * 109.47040 * 49.99975 * 15 14 13
45 45 H 0.97007 * 120.00076 * 179.97438 * 19 18 16
46 46 H 1.08995 * 109.48972 * 60.64434 * 24 14 13
47 47 H 1.08998 * 109.48999 * 180.71033 * 24 14 13
48 48 H 1.08999 * 109.48803 * 296.77785 * 25 11 10
49 49 H 1.09000 * 109.48812 * 56.82422 * 25 11 10
50 50 H 1.08005 * 119.04286 * 180.24196 * 27 26 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8417
5 6 3.5648 1.4443 -0.1257
6 8 4.1293 0.6403 0.9121
7 7 1.6525 2.0975 1.2519
8 6 1.5220 3.4767 1.3011
9 6 1.7572 4.2490 0.1674
10 6 1.6133 5.6290 0.2688
11 7 1.8367 6.4422 -0.8315
12 6 1.6262 7.8566 -0.4926
13 6 1.8043 8.7116 -1.7495
14 7 3.1515 8.4989 -2.2965
15 6 3.3883 9.3606 -3.4626
16 6 4.8448 9.2998 -3.8447
17 1 5.5264 8.6825 -3.2782
18 6 5.3073 10.0323 -4.9173
19 7 6.5782 9.9788 -5.2510
20 14 4.1283 11.0994 -5.8974
21 1 4.0838 12.4605 -5.3054
22 1 4.5933 11.1868 -7.3051
23 1 2.7704 10.4992 -5.8612
24 6 3.3620 7.0846 -2.6355
25 6 3.1838 6.2292 -1.3790
26 7 1.2632 6.1581 1.4400
27 6 1.0446 5.3924 2.4894
28 7 1.1704 4.0821 2.4338
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8900
34 1 3.8499 1.0377 -1.0961
35 1 3.9356 2.4654 -0.0366
36 1 5.0952 0.5956 0.8937
37 1 1.4871 1.5660 2.0463
38 1 2.0435 3.7889 -0.7668
39 1 2.3522 8.1619 0.2608
40 1 0.6177 7.9906 -0.1015
41 1 1.6772 9.7637 -1.4946
42 1 1.0605 8.4247 -2.4929
43 1 2.7789 9.0167 -4.2982
44 1 3.1200 10.3879 -3.2157
45 1 6.9035 10.4939 -6.0060
46 1 2.6360 6.7792 -3.3889
47 1 4.3706 6.9505 -3.0266
48 1 3.9278 6.5157 -0.6358
49 1 3.3106 5.1769 -1.6337
50 1 0.7583 5.8525 3.4236
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000895025851.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:05
Heat of formation + Delta-G solvation = 0.016226 kcal
Electronic energy + Delta-G solvation = -29495.431703 eV
Core-core repulsion = 25557.104518 eV
Total energy + Delta-G solvation = -3938.327185 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.17256 -40.26130 -39.18292 -37.20267 -36.54573 -34.73851 -34.35666 -32.74026
-32.21200 -31.13528 -30.01125 -29.44119 -27.00100 -25.59118 -24.57647 -24.07873
-23.63310 -22.79114 -21.64601 -20.84359 -19.33945 -19.00780 -18.59403 -18.25013
-17.01137 -16.64860 -16.48228 -16.37076 -16.10231 -16.00228 -15.81416 -15.76806
-15.37151 -15.19577 -15.09895 -14.91339 -14.71213 -14.41273 -14.26970 -13.67132
-13.56263 -13.26139 -13.22493 -12.88976 -12.71875 -12.47774 -12.30711 -12.23820
-12.12039 -11.89902 -11.84978 -11.81311 -11.70894 -11.51682 -11.40144 -11.12899
-10.92210 -10.77098 -10.20504 -9.60219 -9.09416 -9.05692 -8.27509 -6.30856
0.13084 0.44038 1.36893 1.37439 1.48075 1.96839 2.35237 2.41322
2.97369 3.05181 3.15869 3.34264 3.38282 3.61658 3.72443 3.84787
3.97492 4.02074 4.07248 4.14812 4.19594 4.26171 4.38355 4.43544
4.49319 4.52190 4.55032 4.57072 4.63843 4.73729 4.78956 4.81842
4.88729 4.90312 4.93652 5.02938 5.06644 5.11180 5.16731 5.29043
5.39886 5.46241 5.53836 5.75703 5.94011 6.07690 6.30942 6.33636
6.61397 6.64237 6.74885 6.84141 7.32909 7.37616 8.88740
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015025 B = 0.002598 C = 0.002377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.169789 B =10774.525938 C =11778.880322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.116 4.116
3 C 0.149 3.851
4 H 0.100 0.900
5 C 0.058 3.942
6 O -0.581 6.581
7 N -0.688 5.688
8 C 0.448 3.552
9 C -0.316 4.316
10 C 0.372 3.628
11 N -0.478 5.478
12 C 0.086 3.914
13 C 0.051 3.949
14 N -0.547 5.547
15 C 0.173 3.827
16 C -0.515 4.515
17 H 0.040 0.960
18 C 0.010 3.990
19 N -0.947 5.947
20 Si 0.945 3.055
21 H -0.266 1.266
22 H -0.283 1.283
23 H -0.251 1.251
24 C 0.070 3.930
25 C 0.080 3.920
26 N -0.612 5.612
27 C 0.355 3.645
28 N -0.612 5.612
29 H 0.054 0.946
30 H 0.065 0.935
31 H 0.046 0.954
32 H 0.092 0.908
33 H 0.072 0.928
34 H 0.077 0.923
35 H 0.037 0.963
36 H 0.394 0.606
37 H 0.409 0.591
38 H 0.151 0.849
39 H 0.047 0.953
40 H 0.096 0.904
41 H 0.087 0.913
42 H 0.036 0.964
43 H -0.010 1.010
44 H 0.030 0.970
45 H 0.267 0.733
46 H 0.036 0.964
47 H 0.073 0.927
48 H 0.040 0.960
49 H 0.107 0.893
50 H 0.221 0.779
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.790 -20.334 12.041 26.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.154 4.154
3 C 0.044 3.956
4 H 0.118 0.882
5 C -0.021 4.021
6 O -0.389 6.389
7 N -0.319 5.319
8 C 0.205 3.795
9 C -0.347 4.347
10 C 0.136 3.864
11 N -0.195 5.195
12 C -0.041 4.041
13 C -0.077 4.077
14 N -0.272 5.272
15 C 0.046 3.954
16 C -0.553 4.553
17 H 0.059 0.941
18 C -0.188 4.188
19 N -0.588 5.588
20 Si 0.769 3.231
21 H -0.191 1.191
22 H -0.208 1.208
23 H -0.175 1.175
24 C -0.059 4.059
25 C -0.045 4.045
26 N -0.338 5.338
27 C 0.065 3.935
28 N -0.339 5.339
29 H 0.073 0.927
30 H 0.084 0.916
31 H 0.065 0.935
32 H 0.111 0.889
33 H 0.091 0.909
34 H 0.095 0.905
35 H 0.055 0.945
36 H 0.243 0.757
37 H 0.246 0.754
38 H 0.168 0.832
39 H 0.065 0.935
40 H 0.114 0.886
41 H 0.106 0.894
42 H 0.054 0.946
43 H 0.008 0.992
44 H 0.048 0.952
45 H 0.076 0.924
46 H 0.054 0.946
47 H 0.092 0.908
48 H 0.059 0.941
49 H 0.125 0.875
50 H 0.237 0.763
Dipole moment (debyes) X Y Z Total
from point charges -13.450 -19.994 12.602 27.193
hybrid contribution 0.759 0.335 -1.320 1.559
sum -12.691 -19.659 11.282 25.977
Atomic orbital electron populations
1.21782 0.95300 1.02228 1.01689 1.21623 0.96015 0.93594 1.04162
1.21415 0.92895 0.94978 0.86291 0.88188 1.22739 0.93716 0.94247
0.91423 1.86403 1.27008 1.71906 1.53576 1.44517 1.72263 1.01082
1.14060 1.18461 0.86037 0.86468 0.88581 1.21519 1.19166 0.92933
1.01069 1.19923 0.88578 0.90608 0.87312 1.59070 1.27428 1.07843
1.25174 1.21928 1.02514 0.83898 0.95740 1.22294 0.89194 1.00348
0.95849 1.62035 1.26442 1.05883 1.32829 1.19922 0.95042 0.92972
0.87482 1.21225 0.93687 1.27331 1.13077 0.94135 1.25802 0.96684
0.98032 0.98240 1.70039 1.15934 1.43447 1.29331 0.85742 0.79940
0.79573 0.77846 1.19137 1.20825 1.17510 1.21977 1.01350 0.87384
0.95154 1.22260 0.85225 1.01129 0.95911 1.68413 1.24022 1.41568
0.99759 1.25004 0.87260 0.84489 0.96767 1.68018 1.25162 1.13414
1.27282 0.92711 0.91585 0.93517 0.88946 0.90901 0.90522 0.94471
0.75668 0.75388 0.83166 0.93491 0.88623 0.89430 0.94598 0.99218
0.95210 0.92435 0.94607 0.90839 0.94109 0.87528 0.76307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.64 9.80 71.98 0.71 -0.93 16
2 C -0.12 -1.19 5.19 30.59 0.16 -1.03 16
3 C 0.15 1.92 2.07 44.99 0.09 2.02 16
4 H 0.10 1.26 6.51 -2.39 -0.02 1.24 16
5 C 0.06 0.73 6.81 71.98 0.49 1.22 16
6 O -0.58 -7.72 12.83 -148.98 -1.91 -9.63 16
7 N -0.69 -11.69 4.63 -324.26 -1.50 -13.19 16
8 C 0.45 10.07 7.68 132.97 1.02 11.09 16
9 C -0.32 -7.44 8.06 22.71 0.18 -7.26 16
10 C 0.37 10.30 6.40 132.94 0.85 11.16 16
11 N -0.48 -14.00 4.73 -701.05 -3.32 -17.31 16
12 C 0.09 2.60 4.80 86.31 0.41 3.02 16
13 C 0.05 1.72 5.61 86.31 0.48 2.20 16
14 N -0.55 -22.42 4.70 -900.28 -4.23 -26.65 16
15 C 0.17 8.16 3.79 85.56 0.32 8.49 16
16 C -0.51 -29.22 9.03 25.60 0.23 -28.99 16
17 H 0.04 2.55 7.37 -2.91 -0.02 2.53 16
18 C 0.01 0.57 5.47 84.66 0.46 1.03 16
19 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16
20 Si 0.95 43.44 27.47 68.60 1.88 45.33 16
21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
23 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16
24 C 0.07 2.58 5.43 86.31 0.47 3.05 16
25 C 0.08 2.41 5.38 86.31 0.46 2.87 16
26 N -0.61 -16.79 8.87 -197.84 -1.75 -18.55 16
27 C 0.36 8.30 12.28 180.92 2.22 10.53 16
28 N -0.61 -14.75 10.47 -197.82 -2.07 -16.82 16
29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
31 H 0.05 0.60 7.75 -2.39 -0.02 0.58 16
32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.07 0.86 7.73 -2.39 -0.02 0.84 16
34 H 0.08 0.67 8.14 -2.38 -0.02 0.66 16
35 H 0.04 0.58 7.81 -2.39 -0.02 0.56 16
36 H 0.39 2.58 9.12 -74.05 -0.68 1.91 16
37 H 0.41 6.84 8.73 -92.71 -0.81 6.03 16
38 H 0.15 3.02 5.53 -2.91 -0.02 3.00 16
39 H 0.05 1.55 8.06 -2.39 -0.02 1.53 16
40 H 0.10 2.68 7.85 -2.39 -0.02 2.66 16
41 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16
42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
43 H -0.01 -0.46 7.18 -2.39 -0.02 -0.48 16
44 H 0.03 1.38 7.45 -2.38 -0.02 1.37 16
45 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16
46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
47 H 0.07 3.07 6.79 -2.39 -0.02 3.06 16
48 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16
49 H 0.11 2.58 6.86 -2.39 -0.02 2.56 16
50 H 0.22 3.51 8.06 -2.91 -0.02 3.49 16
Total: -1.00 -70.69 392.36 -4.61 -75.31
By element:
Atomic # 1 Polarization: 21.76 SS G_CDS: -0.58 Total: 21.18 kcal
Atomic # 6 Polarization: 9.87 SS G_CDS: 8.57 Total: 18.45 kcal
Atomic # 7 Polarization: -138.04 SS G_CDS: -12.58 Total: -150.62 kcal
Atomic # 8 Polarization: -7.72 SS G_CDS: -1.91 Total: -9.63 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal
Total: -70.69 -4.61 -75.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895025851.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.324 kcal
(2) G-P(sol) polarization free energy of solvation -70.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds