Wall clock time and date at job start Tue Mar 31 2020 18:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46968 * 2 1 4 4 H 1.08997 * 109.47134 * 55.00206 * 3 2 1 5 5 C 1.53005 * 109.46953 * 174.99530 * 3 2 1 6 6 O 1.42906 * 109.46699 * 55.00093 * 5 3 2 7 7 N 1.46495 * 109.47293 * 294.99481 * 3 2 1 8 8 C 1.38627 * 119.99958 * 155.00171 * 7 3 2 9 9 C 1.39168 * 120.48670 * 359.71975 * 8 7 3 10 10 C 1.39129 * 118.26714 * 179.78305 * 9 8 7 11 11 N 1.38638 * 120.48436 * 180.24465 * 10 9 8 12 12 C 1.46956 * 110.99835 * 304.05599 * 11 10 9 13 13 C 1.53047 * 109.36714 * 176.81084 * 12 11 10 14 14 N 1.46963 * 109.36526 * 58.39846 * 13 12 11 15 15 C 1.46890 * 111.00106 * 176.81379 * 14 13 12 16 16 C 1.50707 * 109.47439 * 58.98065 * 15 14 13 17 17 H 1.08004 * 119.99345 * 5.00897 * 16 15 14 18 18 C 1.37875 * 120.00120 * 185.01071 * 16 15 14 19 19 N 1.31509 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99732 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47332 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47042 * 119.99952 * 20 18 16 23 23 H 1.48503 * 109.47010 * 239.99645 * 20 18 16 24 24 C 1.46962 * 110.87793 * 300.68434 * 14 13 12 25 25 C 1.46953 * 111.00001 * 180.25510 * 11 10 9 26 26 N 1.33191 * 119.03470 * 0.49790 * 10 9 8 27 27 C 1.31730 * 120.87499 * 359.74527 * 26 10 9 28 28 N 1.31753 * 121.91844 * 359.97438 * 27 26 10 29 29 H 1.09003 * 109.47120 * 300.00425 * 1 2 3 30 30 H 1.09004 * 109.47070 * 59.99692 * 1 2 3 31 31 H 1.08997 * 109.47568 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46772 * 119.99851 * 2 1 3 33 33 H 1.08993 * 109.47422 * 240.00030 * 2 1 3 34 34 H 1.08998 * 109.47129 * 174.99691 * 5 3 2 35 35 H 1.08991 * 109.47458 * 295.00460 * 5 3 2 36 36 H 0.96698 * 113.99582 * 180.02562 * 6 5 3 37 37 H 0.97001 * 120.00288 * 335.00891 * 7 3 2 38 38 H 1.08003 * 120.86127 * 0.02562 * 9 8 7 39 39 H 1.09000 * 109.49204 * 296.77607 * 12 11 10 40 40 H 1.08998 * 109.49217 * 56.84254 * 12 11 10 41 41 H 1.09005 * 109.48815 * 298.43551 * 13 12 11 42 42 H 1.08995 * 109.49303 * 178.36835 * 13 12 11 43 43 H 1.08997 * 109.47504 * 178.97923 * 15 14 13 44 44 H 1.09005 * 109.47571 * 298.97831 * 15 14 13 45 45 H 0.97008 * 119.99647 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.48387 * 299.35107 * 24 14 13 47 47 H 1.08998 * 109.48222 * 179.28323 * 24 14 13 48 48 H 1.08995 * 109.49014 * 303.15618 * 25 11 10 49 49 H 1.09008 * 109.48639 * 63.20122 * 25 11 10 50 50 H 1.08001 * 119.04070 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6404 -0.9120 7 7 1.6525 2.0975 -1.2518 8 6 1.5221 3.4767 -1.3010 9 6 1.7511 4.2485 -0.1657 10 6 1.6115 5.6290 -0.2683 11 7 1.8336 6.4420 0.8324 12 6 0.9837 6.0420 1.9626 13 6 1.3149 6.9100 3.1788 14 7 1.1043 8.3245 2.8400 15 6 1.3395 9.1859 4.0063 16 6 2.7505 8.9908 4.4986 17 1 3.4317 8.3584 3.9484 18 6 3.1716 9.6194 5.6511 19 7 2.3422 10.3897 6.3206 20 14 4.9207 9.3780 6.2609 21 1 5.6471 8.4721 5.3352 22 1 5.6123 10.6911 6.3133 23 1 4.8931 8.7786 7.6193 24 6 1.9542 8.7244 1.7097 25 6 1.6229 7.8564 0.4935 26 7 1.2565 6.1576 -1.4381 27 6 1.0436 5.3924 -2.4890 28 7 1.1707 4.0822 -2.4339 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.9355 2.4655 0.0367 35 1 3.8498 1.0377 1.0961 36 1 5.0951 0.5956 -0.8935 37 1 1.4871 1.5661 -2.0463 38 1 2.0337 3.7880 0.7694 39 1 -0.0644 6.1761 1.6948 40 1 1.1669 4.9947 2.2026 41 1 2.3557 6.7554 3.4634 42 1 0.6656 6.6346 4.0099 43 1 1.1945 10.2284 3.7232 44 1 0.6386 8.9238 4.7989 45 1 2.6387 10.8322 7.1314 46 1 3.0022 8.5903 1.9777 47 1 1.7709 9.7717 1.4698 48 1 2.2722 8.1317 -0.3375 49 1 0.5822 8.0109 0.2086 50 1 0.7564 5.8524 -3.4230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895025856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:09 Heat of formation + Delta-G solvation = -3.483564 kcal Electronic energy + Delta-G solvation = -29642.188998 eV Core-core repulsion = 25703.710051 eV Total energy + Delta-G solvation = -3938.478947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15178 -40.24180 -39.17547 -37.21777 -36.55317 -34.70889 -34.30223 -32.64263 -32.13069 -31.06908 -29.44375 -29.37847 -26.96623 -25.53548 -24.59882 -24.11787 -23.88636 -22.93798 -21.64107 -20.82110 -19.32678 -18.73319 -18.42564 -18.18716 -17.02321 -16.65112 -16.50889 -16.34208 -16.23620 -15.89772 -15.74962 -15.58916 -15.41285 -15.17540 -15.04057 -14.85092 -14.59038 -14.39659 -13.83149 -13.63551 -13.57032 -13.25638 -12.98391 -12.88468 -12.66677 -12.50058 -12.32868 -12.21026 -12.13106 -12.00308 -11.85944 -11.77648 -11.69458 -11.50715 -11.44962 -11.17638 -10.91354 -10.60687 -10.18242 -9.55113 -9.08236 -9.03578 -8.15446 -6.34351 0.15380 0.46153 1.36349 1.38438 1.49780 1.98333 2.37832 2.44868 2.98527 3.10021 3.32068 3.35685 3.39399 3.62861 3.75421 3.88036 3.98793 4.07513 4.13362 4.18735 4.21174 4.37868 4.44333 4.48430 4.51391 4.52569 4.58141 4.63015 4.65895 4.74817 4.82711 4.89821 4.96643 5.06183 5.09337 5.13812 5.19472 5.22497 5.31467 5.33965 5.41120 5.52858 5.73979 5.79760 6.00911 6.09507 6.24577 6.35489 6.46320 6.66008 6.83937 6.85822 7.37161 7.39648 8.87563 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.002794 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.685569 B =10019.490961 C =11040.081408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.149 3.851 4 H 0.101 0.899 5 C 0.059 3.941 6 O -0.581 6.581 7 N -0.688 5.688 8 C 0.448 3.552 9 C -0.316 4.316 10 C 0.373 3.627 11 N -0.482 5.482 12 C 0.080 3.920 13 C 0.066 3.934 14 N -0.544 5.544 15 C 0.201 3.799 16 C -0.554 4.554 17 H 0.057 0.943 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.276 1.276 24 C 0.064 3.936 25 C 0.090 3.910 26 N -0.613 5.613 27 C 0.356 3.644 28 N -0.612 5.612 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.409 0.591 38 H 0.150 0.850 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.004 0.996 44 H 0.012 0.988 45 H 0.265 0.735 46 H 0.026 0.974 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.052 0.948 50 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -22.115 -14.734 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.044 3.956 4 H 0.118 0.882 5 C -0.020 4.020 6 O -0.388 6.388 7 N -0.319 5.319 8 C 0.205 3.795 9 C -0.347 4.347 10 C 0.137 3.863 11 N -0.199 5.199 12 C -0.046 4.046 13 C -0.062 4.062 14 N -0.268 5.268 15 C 0.074 3.926 16 C -0.593 4.593 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.566 5.566 20 Si 0.782 3.218 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.202 1.202 24 C -0.065 4.065 25 C -0.037 4.037 26 N -0.339 5.339 27 C 0.065 3.935 28 N -0.339 5.339 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.246 0.754 38 H 0.168 0.832 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.022 0.978 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.417 -21.729 -15.252 26.585 hybrid contribution 1.868 0.157 1.296 2.279 sum 0.451 -21.572 -13.957 25.697 Atomic orbital electron populations 1.21786 0.95282 1.02236 1.01736 1.21623 0.96025 0.93556 1.04147 1.21412 0.92843 0.94992 0.86328 0.88171 1.22723 0.93806 0.94134 0.91368 1.86406 1.26965 1.71889 1.53574 1.44502 1.72321 1.01063 1.14052 1.18448 0.86132 0.86457 0.88449 1.21492 1.19085 0.92868 1.01291 1.19937 0.86574 0.90133 0.89654 1.58989 1.51227 1.04790 1.04874 1.22316 0.94016 1.00168 0.88087 1.21965 1.00091 0.88121 0.96073 1.62648 1.53089 1.03418 1.07663 1.19399 0.94260 0.91463 0.87442 1.21981 0.98971 1.29109 1.09195 0.92536 1.25784 1.01399 0.94657 0.96806 1.70068 1.37059 1.31615 1.17821 0.85530 0.80015 0.77998 0.78269 1.19281 1.20582 1.20201 1.22020 0.95317 0.98611 0.90582 1.21906 1.01083 0.84234 0.96481 1.68411 1.22626 1.41867 1.01022 1.24997 0.87394 0.84524 0.96584 1.68023 1.25428 1.13377 1.27101 0.92639 0.93512 0.91607 0.88947 0.90905 0.94644 0.90576 0.75710 0.75386 0.83229 0.93216 0.87543 0.94864 0.90425 0.97791 0.97017 0.92605 0.95580 0.90981 0.89494 0.92971 0.76329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.80 71.98 0.71 -0.97 16 2 C -0.12 -1.20 5.19 30.59 0.16 -1.04 16 3 C 0.15 1.96 2.07 44.99 0.09 2.06 16 4 H 0.10 1.27 6.50 -2.39 -0.02 1.26 16 5 C 0.06 0.76 6.82 71.98 0.49 1.25 16 6 O -0.58 -7.69 12.83 -148.98 -1.91 -9.60 16 7 N -0.69 -11.90 4.63 -324.25 -1.50 -13.40 16 8 C 0.45 10.29 7.68 132.97 1.02 11.31 16 9 C -0.32 -7.70 8.08 22.71 0.18 -7.51 16 10 C 0.37 10.80 6.41 132.95 0.85 11.66 16 11 N -0.48 -15.17 4.74 -701.06 -3.32 -18.49 16 12 C 0.08 2.37 5.37 86.31 0.46 2.83 16 13 C 0.07 2.48 5.24 86.31 0.45 2.93 16 14 N -0.54 -23.33 4.92 -900.27 -4.43 -27.76 16 15 C 0.20 10.47 5.14 85.56 0.44 10.91 16 16 C -0.55 -30.30 7.66 25.60 0.20 -30.10 16 17 H 0.06 3.08 5.82 -2.91 -0.02 3.07 16 18 C 0.01 0.72 5.46 84.65 0.46 1.18 16 19 N -0.93 -54.55 13.29 21.45 0.28 -54.26 16 20 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 C 0.06 2.51 5.32 86.31 0.46 2.97 16 25 C 0.09 3.01 4.80 86.31 0.41 3.42 16 26 N -0.61 -17.52 8.87 -197.84 -1.75 -19.27 16 27 C 0.36 8.56 12.28 180.92 2.22 10.78 16 28 N -0.61 -15.06 10.47 -197.83 -2.07 -17.13 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.61 7.75 -2.38 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.87 7.73 -2.39 -0.02 0.85 16 34 H 0.04 0.58 7.82 -2.39 -0.02 0.57 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.39 2.47 9.12 -74.06 -0.68 1.79 16 37 H 0.41 6.93 8.73 -92.71 -0.81 6.12 16 38 H 0.15 3.13 5.52 -2.91 -0.02 3.12 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.11 2.54 6.84 -2.39 -0.02 2.52 16 41 H 0.03 1.38 6.62 -2.38 -0.02 1.36 16 42 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.00 0.22 8.12 -2.39 -0.02 0.20 16 44 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 46 H 0.03 1.14 6.78 -2.39 -0.02 1.12 16 47 H 0.07 2.83 8.12 -2.39 -0.02 2.81 16 48 H 0.09 2.81 7.84 -2.39 -0.02 2.79 16 49 H 0.05 1.78 8.06 -2.38 -0.02 1.76 16 50 H 0.22 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -67.60 392.63 -4.58 -72.18 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.52 Total: 20.50 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 8.61 Total: 21.68 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -12.79 Total: -150.31 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.91 Total: -9.60 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.60 -4.58 -72.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895025856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.697 kcal (2) G-P(sol) polarization free energy of solvation -67.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds