Wall clock time and date at job start Tue Mar 31 2020 18:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47224 * 2 1 4 4 N 1.46905 * 109.47079 * 120.00337 * 2 1 3 5 5 C 1.46949 * 111.00334 * 174.99796 * 4 2 1 6 6 C 1.53046 * 109.36843 * 183.18878 * 5 4 2 7 7 N 1.46959 * 109.36205 * 301.59783 * 6 5 4 8 8 C 1.46895 * 110.99938 * 183.18820 * 7 6 5 9 9 C 1.53003 * 109.47203 * 169.99678 * 8 7 6 10 10 C 1.50706 * 109.47232 * 179.97438 * 9 8 7 11 11 O 1.21300 * 119.99947 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99771 * 180.02562 * 10 9 8 13 13 C 1.40595 * 119.99589 * 180.02562 * 12 10 9 14 14 C 1.40652 * 126.08495 * 359.94766 * 13 12 10 15 15 N 1.30903 * 108.38859 * 180.02562 * 14 13 12 16 16 N 1.40068 * 108.40568 * 0.02562 * 15 14 13 17 17 C 1.37331 * 126.06727 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99569 * 174.16360 * 17 16 15 19 19 C 1.38984 * 119.99842 * 354.15384 * 17 16 15 20 20 N 1.31293 * 120.00314 * 5.94034 * 19 17 16 21 21 Si 1.86803 * 119.99701 * 185.94289 * 19 17 16 22 22 H 1.48493 * 109.47206 * 94.97996 * 21 19 17 23 23 H 1.48503 * 109.46692 * 214.98261 * 21 19 17 24 24 H 1.48503 * 109.47150 * 334.97759 * 21 19 17 25 25 C 1.35682 * 126.07936 * 179.97438 * 13 12 10 26 26 C 1.46952 * 110.88258 * 59.31769 * 7 6 5 27 27 C 1.46959 * 110.99821 * 298.79660 * 4 2 1 28 28 H 1.09006 * 109.46937 * 299.99859 * 1 2 3 29 29 H 1.09004 * 109.47204 * 59.99531 * 1 2 3 30 30 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47238 * 239.99700 * 2 1 3 32 32 H 1.09000 * 109.47149 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47304 * 300.00217 * 3 2 1 34 34 H 1.09006 * 109.47048 * 60.00210 * 3 2 1 35 35 H 1.09005 * 109.48948 * 63.21581 * 5 4 2 36 36 H 1.09007 * 109.48836 * 303.15902 * 5 4 2 37 37 H 1.09004 * 109.49008 * 181.63440 * 6 5 4 38 38 H 1.08997 * 109.49139 * 61.56545 * 6 5 4 39 39 H 1.09006 * 109.47078 * 50.00011 * 8 7 6 40 40 H 1.09002 * 109.47462 * 289.99959 * 8 7 6 41 41 H 1.09006 * 109.46831 * 60.00182 * 9 8 7 42 42 H 1.08997 * 109.47245 * 299.99998 * 9 8 7 43 43 H 0.96998 * 120.00334 * 359.97438 * 12 10 9 44 44 H 1.07996 * 125.80499 * 0.07943 * 14 13 12 45 45 H 0.96996 * 119.99972 * 179.97438 * 20 19 17 46 46 H 1.08001 * 126.24886 * 0.22261 * 25 13 12 47 47 H 1.09010 * 109.48489 * 60.64580 * 26 7 6 48 48 H 1.08997 * 109.49246 * 180.70715 * 26 7 6 49 49 H 1.08997 * 109.48926 * 296.78099 * 27 4 2 50 50 H 1.09004 * 109.48649 * 56.84642 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4837 -0.8167 1.1752 6 6 3.9461 -1.6113 2.3987 7 7 3.4985 -0.9285 3.6207 8 6 3.9881 -1.6210 4.8201 9 6 3.7200 -0.7563 6.0535 10 6 4.2217 -1.4671 7.2841 11 8 4.7430 -2.5578 7.1843 12 7 4.0913 -0.8908 8.4954 13 6 4.5599 -1.5536 9.6433 14 6 5.1808 -2.8152 9.6759 15 7 5.4752 -3.0985 10.9195 16 7 5.0552 -2.0339 11.7270 17 6 5.1863 -1.9535 13.0917 18 1 4.9129 -1.0451 13.6078 19 6 5.6705 -3.0413 13.8085 20 7 6.1119 -4.1022 13.1734 21 14 5.6933 -2.9939 15.6758 22 1 4.4663 -3.6437 16.2025 23 1 6.8901 -3.7179 16.1747 24 1 5.7418 -1.5823 16.1346 25 6 4.4930 -1.0903 10.9168 26 6 2.0344 -0.8043 3.6450 27 6 1.5721 -0.0098 2.4214 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.9332 0.1762 1.1951 36 1 3.7896 -1.3364 0.2671 37 1 5.0340 -1.6797 2.3981 38 1 3.5183 -2.6133 2.3646 39 1 5.0597 -1.7972 4.7259 40 1 3.4710 -2.5748 4.9256 41 1 2.6484 -0.5801 6.1477 42 1 4.2371 0.1974 5.9481 43 1 3.6747 -0.0184 8.5751 44 1 5.3814 -3.4430 8.8204 45 1 6.4502 -4.8612 13.6737 46 1 4.0681 -0.1488 11.2323 47 1 1.5849 -1.7973 3.6250 48 1 1.7286 -0.2847 4.5530 49 1 1.9998 0.9922 2.4555 50 1 0.4842 0.0586 2.4220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900439624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:07 Heat of formation + Delta-G solvation = 60.075217 kcal Electronic energy + Delta-G solvation = -28392.276456 eV Core-core repulsion = 24456.553624 eV Total energy + Delta-G solvation = -3935.722832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.10495 -39.76966 -38.60680 -36.85261 -34.17568 -33.14536 -32.84150 -31.20011 -30.53935 -30.04500 -27.76486 -27.62169 -26.17095 -24.75551 -24.03974 -22.65780 -21.16032 -20.87081 -19.91904 -19.43763 -19.35384 -17.56527 -16.90515 -16.22988 -15.82681 -15.46126 -15.38828 -15.20745 -15.05897 -14.93075 -14.59701 -14.39374 -14.07263 -13.94256 -13.47235 -13.23591 -13.15279 -12.85372 -12.83823 -12.43747 -12.29714 -12.12014 -11.92345 -11.68467 -11.66282 -11.54921 -11.39005 -11.27820 -11.22974 -11.06654 -10.91039 -10.80335 -10.68217 -10.51487 -10.10852 -9.15096 -9.11531 -8.77482 -8.65899 -8.44535 -8.02996 -6.66474 -6.54213 -4.20676 2.87171 3.05616 3.07104 3.11421 3.43414 3.55022 3.70893 3.82003 4.03624 4.44272 4.45622 4.55509 4.72185 4.76289 4.81572 4.90521 4.94211 4.99423 5.03016 5.09375 5.16203 5.19657 5.21713 5.25245 5.35774 5.36743 5.45919 5.50242 5.54337 5.62230 5.68391 5.71977 5.78205 5.83701 5.91308 5.95225 6.00618 6.26943 6.49848 6.70528 6.71740 6.90849 6.93343 6.94934 6.99605 7.16618 7.27797 7.88706 8.22315 8.32847 8.66699 8.91389 9.40856 9.69979 10.42210 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.043365 B = 0.001659 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.523589 B =16875.809373 C =17171.490574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.187 4.187 4 N -0.535 5.535 5 C 0.056 3.944 6 C 0.058 3.942 7 N -0.541 5.541 8 C 0.073 3.927 9 C -0.131 4.131 10 C 0.499 3.501 11 O -0.539 6.539 12 N -0.626 5.626 13 C -0.060 4.060 14 C -0.033 4.033 15 N -0.262 5.262 16 N -0.144 5.144 17 C -0.325 4.325 18 H 0.116 0.884 19 C 0.047 3.953 20 N -0.770 5.770 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.084 4.084 26 C 0.051 3.949 27 C 0.052 3.948 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.397 0.603 44 H 0.176 0.824 45 H 0.274 0.726 46 H 0.145 0.855 47 H 0.043 0.957 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 10.824 -22.736 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.246 4.246 4 N -0.259 5.259 5 C -0.072 4.072 6 C -0.070 4.070 7 N -0.266 5.266 8 C -0.055 4.055 9 C -0.172 4.172 10 C 0.284 3.716 11 O -0.417 6.417 12 N -0.268 5.268 13 C -0.165 4.165 14 C -0.209 4.209 15 N -0.093 5.093 16 N 0.088 4.912 17 C -0.457 4.457 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.235 4.235 26 C -0.077 4.077 27 C -0.076 4.076 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.229 0.771 44 H 0.192 0.808 45 H 0.085 0.915 46 H 0.162 0.838 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.064 0.936 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.472 8.940 -21.978 25.194 hybrid contribution -0.613 1.250 0.356 1.437 sum -9.086 10.189 -21.622 25.571 Atomic orbital electron populations 1.21872 0.94295 1.02459 1.01682 1.21683 0.95794 0.92466 0.93313 1.22479 1.01637 0.98093 1.02392 1.62413 1.10892 1.50691 1.01922 1.22171 0.87440 0.99652 0.97929 1.22128 1.00235 0.95922 0.88759 1.62142 1.10626 1.51678 1.02195 1.21767 1.01525 0.94720 0.87447 1.21545 1.02614 1.00569 0.92425 1.20359 0.80613 0.86485 0.84102 1.90595 1.44195 1.20971 1.85949 1.42548 1.58608 1.20737 1.04948 1.17307 1.16427 0.97621 0.85158 1.24104 1.04536 0.95876 0.96392 1.78237 1.22849 1.08993 0.99195 1.44541 1.31549 1.09653 1.05442 1.19869 1.45995 1.02212 0.77615 0.86648 1.25637 0.95275 0.94859 1.01282 1.70224 1.29161 1.03925 1.36380 0.85822 0.78452 0.79208 0.80722 1.19666 1.20111 1.18800 1.21270 1.13716 0.98772 0.89702 1.22240 0.87845 0.99744 0.97861 1.22239 1.00141 0.96207 0.88982 0.92482 0.92312 0.91844 0.90107 0.92394 0.92180 0.92181 0.93633 0.90502 0.90121 0.93869 0.89777 0.93662 0.89470 0.88528 0.77057 0.80763 0.91505 0.83752 0.93911 0.90049 0.93588 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.00 37.16 0.33 -0.52 16 2 C 0.08 0.50 2.96 -67.71 -0.20 0.30 16 3 C -0.19 -1.15 8.49 37.15 0.32 -0.83 16 4 N -0.53 -4.38 4.70 -226.49 -1.06 -5.45 16 5 C 0.06 0.46 5.25 -3.77 -0.02 0.44 16 6 C 0.06 0.54 5.61 -3.77 -0.02 0.52 16 7 N -0.54 -5.52 4.71 -234.47 -1.10 -6.63 16 8 C 0.07 0.88 4.25 -3.83 -0.02 0.86 16 9 C -0.13 -1.53 5.63 -27.88 -0.16 -1.69 16 10 C 0.50 8.50 7.80 -10.98 -0.09 8.42 16 11 O -0.54 -11.45 13.13 5.54 0.07 -11.38 16 12 N -0.63 -11.04 5.47 -10.00 -0.05 -11.10 16 13 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 14 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 15 N -0.26 -7.73 10.42 30.80 0.32 -7.41 16 16 N -0.14 -4.00 3.74 -11.41 -0.04 -4.05 16 17 C -0.32 -8.69 10.24 -14.81 -0.15 -8.84 16 18 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 19 C 0.05 1.22 5.50 -17.51 -0.10 1.12 16 20 N -0.77 -21.78 11.84 55.49 0.66 -21.12 16 21 Si 0.93 19.09 29.56 -169.99 -5.02 14.07 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 26 C 0.05 0.47 5.41 -3.77 -0.02 0.45 16 27 C 0.05 0.42 4.81 -3.77 -0.02 0.40 16 28 H 0.06 0.34 6.36 -51.93 -0.33 0.01 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.06 0.38 6.59 -51.93 -0.34 0.04 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.40 6.46 -51.93 -0.34 0.06 16 35 H 0.05 0.39 6.60 -51.93 -0.34 0.04 16 36 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.10 7.98 -51.93 -0.41 0.68 16 40 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.09 0.86 6.49 -51.93 -0.34 0.52 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.40 5.33 8.83 -40.82 -0.36 4.97 16 44 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 47 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.08 0.68 6.34 -51.93 -0.33 0.35 16 49 H 0.05 0.39 6.46 -51.93 -0.34 0.05 16 50 H 0.08 0.58 6.17 -51.93 -0.32 0.26 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -33.46 388.71 -9.42 -42.88 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.95 Total: 8.91 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.09 Total: -4.59 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -1.29 Total: -55.75 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.46 -9.42 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900439624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.954 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds