Wall clock time and date at job start Tue Mar 31 2020 18:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47224 * 2 1 4 4 N 1.46905 * 109.47079 * 120.00337 * 2 1 3 5 5 C 1.46949 * 111.00334 * 174.99796 * 4 2 1 6 6 C 1.53046 * 109.36843 * 183.18878 * 5 4 2 7 7 N 1.46959 * 109.36205 * 301.59783 * 6 5 4 8 8 C 1.46895 * 110.99938 * 183.18820 * 7 6 5 9 9 C 1.53003 * 109.47203 * 169.99678 * 8 7 6 10 10 C 1.50706 * 109.47232 * 179.97438 * 9 8 7 11 11 O 1.21300 * 119.99947 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99771 * 180.02562 * 10 9 8 13 13 C 1.40595 * 119.99589 * 180.02562 * 12 10 9 14 14 C 1.40652 * 126.08495 * 359.94766 * 13 12 10 15 15 N 1.30903 * 108.38859 * 180.02562 * 14 13 12 16 16 N 1.40068 * 108.40568 * 0.02562 * 15 14 13 17 17 C 1.37331 * 126.06727 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99569 * 174.16360 * 17 16 15 19 19 C 1.38984 * 119.99842 * 354.15384 * 17 16 15 20 20 N 1.31293 * 120.00314 * 5.94034 * 19 17 16 21 21 Si 1.86803 * 119.99701 * 185.94289 * 19 17 16 22 22 H 1.48493 * 109.47206 * 94.97996 * 21 19 17 23 23 H 1.48503 * 109.46692 * 214.98261 * 21 19 17 24 24 H 1.48503 * 109.47150 * 334.97759 * 21 19 17 25 25 C 1.35682 * 126.07936 * 179.97438 * 13 12 10 26 26 C 1.46952 * 110.88258 * 59.31769 * 7 6 5 27 27 C 1.46959 * 110.99821 * 298.79660 * 4 2 1 28 28 H 1.09006 * 109.46937 * 299.99859 * 1 2 3 29 29 H 1.09004 * 109.47204 * 59.99531 * 1 2 3 30 30 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47238 * 239.99700 * 2 1 3 32 32 H 1.09000 * 109.47149 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47304 * 300.00217 * 3 2 1 34 34 H 1.09006 * 109.47048 * 60.00210 * 3 2 1 35 35 H 1.09005 * 109.48948 * 63.21581 * 5 4 2 36 36 H 1.09007 * 109.48836 * 303.15902 * 5 4 2 37 37 H 1.09004 * 109.49008 * 181.63440 * 6 5 4 38 38 H 1.08997 * 109.49139 * 61.56545 * 6 5 4 39 39 H 1.09006 * 109.47078 * 50.00011 * 8 7 6 40 40 H 1.09002 * 109.47462 * 289.99959 * 8 7 6 41 41 H 1.09006 * 109.46831 * 60.00182 * 9 8 7 42 42 H 1.08997 * 109.47245 * 299.99998 * 9 8 7 43 43 H 0.96998 * 120.00334 * 359.97438 * 12 10 9 44 44 H 1.07996 * 125.80499 * 0.07943 * 14 13 12 45 45 H 0.96996 * 119.99972 * 179.97438 * 20 19 17 46 46 H 1.08001 * 126.24886 * 0.22261 * 25 13 12 47 47 H 1.09010 * 109.48489 * 60.64580 * 26 7 6 48 48 H 1.08997 * 109.49246 * 180.70715 * 26 7 6 49 49 H 1.08997 * 109.48926 * 296.78099 * 27 4 2 50 50 H 1.09004 * 109.48649 * 56.84642 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4837 -0.8167 1.1752 6 6 3.9461 -1.6113 2.3987 7 7 3.4985 -0.9285 3.6207 8 6 3.9881 -1.6210 4.8201 9 6 3.7200 -0.7563 6.0535 10 6 4.2217 -1.4671 7.2841 11 8 4.7430 -2.5578 7.1843 12 7 4.0913 -0.8908 8.4954 13 6 4.5599 -1.5536 9.6433 14 6 5.1808 -2.8152 9.6759 15 7 5.4752 -3.0985 10.9195 16 7 5.0552 -2.0339 11.7270 17 6 5.1863 -1.9535 13.0917 18 1 4.9129 -1.0451 13.6078 19 6 5.6705 -3.0413 13.8085 20 7 6.1119 -4.1022 13.1734 21 14 5.6933 -2.9939 15.6758 22 1 4.4663 -3.6437 16.2025 23 1 6.8901 -3.7179 16.1747 24 1 5.7418 -1.5823 16.1346 25 6 4.4930 -1.0903 10.9168 26 6 2.0344 -0.8043 3.6450 27 6 1.5721 -0.0098 2.4214 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.9332 0.1762 1.1951 36 1 3.7896 -1.3364 0.2671 37 1 5.0340 -1.6797 2.3981 38 1 3.5183 -2.6133 2.3646 39 1 5.0597 -1.7972 4.7259 40 1 3.4710 -2.5748 4.9256 41 1 2.6484 -0.5801 6.1477 42 1 4.2371 0.1974 5.9481 43 1 3.6747 -0.0184 8.5751 44 1 5.3814 -3.4430 8.8204 45 1 6.4502 -4.8612 13.6737 46 1 4.0681 -0.1488 11.2323 47 1 1.5849 -1.7973 3.6250 48 1 1.7286 -0.2847 4.5530 49 1 1.9998 0.9922 2.4555 50 1 0.4842 0.0586 2.4220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900439624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:05 Heat of formation + Delta-G solvation = 35.058767 kcal Electronic energy + Delta-G solvation = -28393.361250 eV Core-core repulsion = 24456.553624 eV Total energy + Delta-G solvation = -3936.807626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69782 -40.74953 -40.10872 -37.64207 -35.89793 -34.93757 -33.67008 -32.25832 -31.88747 -31.26475 -29.49584 -28.09161 -27.25185 -26.45914 -24.74567 -23.75670 -22.78081 -21.81659 -21.39269 -21.10365 -20.08389 -19.32331 -18.04725 -17.43882 -17.17265 -16.90214 -16.73707 -16.11489 -15.99094 -15.76823 -15.69426 -15.44634 -15.22280 -15.06919 -14.82932 -14.74553 -14.29443 -14.07080 -13.77806 -13.48640 -13.29811 -13.16556 -12.97873 -12.91829 -12.80755 -12.76832 -12.60032 -12.36169 -12.20506 -12.06299 -11.94434 -11.80783 -11.76377 -11.48140 -11.36692 -11.00365 -10.82157 -10.62287 -10.09085 -9.41971 -9.15528 -8.50478 -8.46771 -6.23678 1.23743 1.39965 1.55805 1.58351 1.89029 2.05661 2.28873 2.55084 2.84104 2.96217 3.08006 3.09299 3.82441 3.88649 3.93687 4.04738 4.15331 4.23142 4.25165 4.36195 4.41618 4.44309 4.49219 4.51444 4.53185 4.62134 4.66959 4.78471 4.82819 4.86584 4.91961 4.95768 4.97903 5.01632 5.01904 5.05263 5.07790 5.12464 5.18431 5.31004 5.35019 5.42499 5.52580 5.94863 5.97286 6.01887 6.19985 6.24521 6.33796 6.75078 6.81359 7.44594 7.50119 7.70204 8.52962 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.043365 B = 0.001659 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.523589 B =16875.809373 C =17171.490574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.181 4.181 4 N -0.547 5.547 5 C 0.062 3.938 6 C 0.056 3.944 7 N -0.536 5.536 8 C 0.079 3.921 9 C -0.112 4.112 10 C 0.497 3.503 11 O -0.584 6.584 12 N -0.617 5.617 13 C -0.044 4.044 14 C -0.061 4.061 15 N -0.313 5.313 16 N -0.170 5.170 17 C -0.356 4.356 18 H 0.141 0.859 19 C -0.007 4.007 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.242 1.242 25 C -0.080 4.080 26 C 0.049 3.951 27 C 0.057 3.943 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.421 0.579 44 H 0.166 0.834 45 H 0.276 0.724 46 H 0.189 0.811 47 H 0.028 0.972 48 H 0.095 0.905 49 H 0.047 0.953 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.056 13.883 -22.968 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.240 4.240 4 N -0.272 5.272 5 C -0.066 4.066 6 C -0.073 4.073 7 N -0.261 5.261 8 C -0.050 4.050 9 C -0.152 4.152 10 C 0.285 3.715 11 O -0.464 6.464 12 N -0.263 5.263 13 C -0.151 4.151 14 C -0.237 4.237 15 N -0.145 5.145 16 N 0.061 4.939 17 C -0.487 4.487 18 H 0.159 0.841 19 C -0.219 4.219 20 N -0.454 5.454 21 Si 0.838 3.162 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.165 1.165 25 C -0.230 4.230 26 C -0.079 4.079 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.258 0.742 44 H 0.183 0.817 45 H 0.086 0.914 46 H 0.206 0.794 47 H 0.047 0.953 48 H 0.113 0.887 49 H 0.065 0.935 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.086 12.063 -22.256 27.250 hybrid contribution -0.165 0.328 0.232 0.434 sum -10.251 12.391 -22.024 27.271 Atomic orbital electron populations 1.21844 0.93668 1.02113 1.02329 1.21735 0.96261 0.92688 0.92630 1.22415 1.01215 0.97653 1.02717 1.62425 1.10791 1.51359 1.02607 1.22110 0.87624 0.99396 0.97467 1.22180 1.00398 0.95519 0.89167 1.62187 1.11388 1.50920 1.01581 1.21620 1.00466 0.94187 0.88681 1.21481 1.04368 1.00426 0.88892 1.21382 0.79076 0.85930 0.85108 1.90592 1.45903 1.23286 1.86610 1.42520 1.58640 1.21592 1.03524 1.17392 1.14344 0.96320 0.87002 1.24150 1.06123 0.97753 0.95640 1.78130 1.24737 1.11156 1.00484 1.44841 1.32778 1.10142 1.06146 1.20628 1.46643 1.03660 0.77739 0.84140 1.26896 0.93977 0.93920 1.07066 1.70407 1.31044 1.05117 1.38865 0.84573 0.78234 0.80228 0.73127 1.19202 1.20188 1.16457 1.22027 1.12277 0.99393 0.89331 1.22336 0.86917 0.99395 0.99259 1.22203 1.00693 0.95803 0.88371 0.92402 0.91106 0.92659 0.89965 0.92936 0.91188 0.92486 0.93651 0.89589 0.89918 0.95208 0.91276 0.95840 0.86525 0.85867 0.74163 0.81741 0.91447 0.79419 0.95343 0.88671 0.93497 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.00 71.98 0.65 -0.75 16 2 C 0.07 0.86 2.96 44.91 0.13 0.99 16 3 C -0.18 -1.84 8.49 71.98 0.61 -1.23 16 4 N -0.55 -8.14 4.70 -870.49 -4.09 -12.23 16 5 C 0.06 0.93 5.25 86.31 0.45 1.39 16 6 C 0.06 1.02 5.61 86.31 0.48 1.50 16 7 N -0.54 -10.21 4.71 -895.72 -4.22 -14.43 16 8 C 0.08 1.84 4.25 86.31 0.37 2.21 16 9 C -0.11 -2.33 5.63 29.85 0.17 -2.16 16 10 C 0.50 16.40 7.80 87.66 0.68 17.08 16 11 O -0.58 -25.33 13.13 -3.09 -0.04 -25.37 16 12 N -0.62 -20.58 5.47 -303.92 -1.66 -22.24 16 13 C -0.04 -2.04 6.90 37.73 0.26 -1.78 16 14 C -0.06 -3.41 10.85 85.42 0.93 -2.48 16 15 N -0.31 -19.24 10.42 -56.47 -0.59 -19.82 16 16 N -0.17 -9.54 3.74 -190.01 -0.71 -10.25 16 17 C -0.36 -19.03 10.24 84.01 0.86 -18.17 16 18 H 0.14 6.49 7.84 -2.91 -0.02 6.47 16 19 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 20 N -0.83 -48.46 11.84 21.66 0.26 -48.20 16 21 Si 1.02 38.96 29.56 68.60 2.03 40.99 16 22 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.24 -8.27 7.11 99.48 0.71 -7.56 16 25 C -0.08 -3.71 11.49 83.38 0.96 -2.75 16 26 C 0.05 0.81 5.41 86.31 0.47 1.28 16 27 C 0.06 0.81 4.81 86.31 0.42 1.22 16 28 H 0.06 0.56 6.36 -2.38 -0.02 0.55 16 29 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.92 8.11 -2.39 -0.02 0.90 16 32 H 0.05 0.60 6.59 -2.39 -0.02 0.58 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.62 6.46 -2.38 -0.02 0.61 16 35 H 0.05 0.69 6.60 -2.38 -0.02 0.68 16 36 H 0.09 1.12 8.12 -2.38 -0.02 1.10 16 37 H 0.08 1.45 8.07 -2.38 -0.02 1.43 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 1.82 7.98 -2.38 -0.02 1.80 16 40 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16 41 H 0.12 1.84 6.49 -2.38 -0.02 1.82 16 42 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.42 9.81 8.83 -92.71 -0.82 8.99 16 44 H 0.17 9.28 5.92 -2.91 -0.02 9.27 16 45 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 47 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.10 1.30 6.34 -2.39 -0.02 1.28 16 49 H 0.05 0.67 6.46 -2.39 -0.02 0.65 16 50 H 0.09 1.10 6.17 -2.38 -0.01 1.08 16 Total: -1.00 -77.15 388.71 -0.99 -78.14 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.13 Total: 37.01 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 7.90 Total: -3.58 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -11.01 Total: -127.19 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.04 Total: -25.37 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -77.15 -0.99 -78.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900439624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.199 kcal (2) G-P(sol) polarization free energy of solvation -77.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds