Wall clock time and date at job start Tue Mar 31 2020 19:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46811 * 2 1 4 4 N 1.46503 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.34816 * 126.59289 * 125.00329 * 4 3 2 6 6 C 1.36587 * 106.83986 * 179.97438 * 5 4 3 7 7 C 1.47529 * 125.77077 * 179.97438 * 6 5 4 8 8 O 1.21593 * 119.99842 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99852 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99889 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46906 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.42671 * 64.94435 * 11 10 9 13 13 C 1.54876 * 109.44558 * 184.87089 * 11 10 9 14 14 C 1.47095 * 110.31908 * 191.29239 * 13 11 10 15 15 C 1.52564 * 114.33428 * 297.19485 * 14 13 11 16 16 C 1.50886 * 109.34980 * 85.02486 * 15 14 13 17 17 C 1.53946 * 110.09485 * 268.11366 * 16 15 14 18 18 N 1.44572 * 109.45340 * 305.00304 * 11 10 9 19 19 C 1.36939 * 118.64530 * 329.26936 * 18 11 10 20 20 H 1.08003 * 119.99253 * 331.90154 * 19 18 11 21 21 C 1.38805 * 120.00246 * 151.90217 * 19 18 11 22 22 N 1.31621 * 120.00167 * 344.14280 * 21 19 18 23 23 Si 1.86808 * 119.99796 * 164.14735 * 21 19 18 24 24 H 1.48499 * 109.46880 * 94.37029 * 23 21 19 25 25 H 1.48502 * 109.46930 * 214.36506 * 23 21 19 26 26 H 1.48493 * 109.47061 * 334.36946 * 23 21 19 27 27 N 1.34404 * 108.46133 * 0.24516 * 6 5 4 28 28 N 1.28764 * 109.51757 * 359.58599 * 27 6 5 29 29 H 1.08998 * 109.46723 * 299.99203 * 1 2 3 30 30 H 1.08994 * 109.47516 * 60.00120 * 1 2 3 31 31 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46723 * 240.00797 * 2 1 3 33 33 H 1.09000 * 109.47231 * 120.00533 * 2 1 3 34 34 H 1.09001 * 109.47116 * 60.00426 * 3 2 1 35 35 H 1.09002 * 109.47180 * 300.00470 * 3 2 1 36 36 H 1.08000 * 126.57979 * 359.97438 * 5 4 3 37 37 H 0.97003 * 120.00391 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.46679 * 60.01081 * 10 9 7 39 39 H 1.08991 * 109.47551 * 300.00812 * 10 9 7 40 40 H 1.09000 * 109.33068 * 311.55360 * 13 11 10 41 41 H 1.09002 * 109.32747 * 71.03622 * 13 11 10 42 42 H 1.08997 * 108.50969 * 175.93596 * 14 13 11 43 43 H 1.09005 * 108.38705 * 58.35700 * 14 13 11 44 44 H 1.08999 * 109.49171 * 325.06310 * 15 14 13 45 45 H 1.08997 * 109.51143 * 204.99821 * 15 14 13 46 46 H 1.08994 * 109.36379 * 147.92506 * 16 15 14 47 47 H 1.08996 * 109.25956 * 28.24027 * 16 15 14 48 48 H 1.08998 * 108.94476 * 279.88121 * 17 16 15 49 49 H 1.08994 * 108.87728 * 161.20149 * 17 16 15 50 50 H 0.97000 * 119.99826 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0636 -0.8875 6 6 5.5939 1.7993 -0.5096 7 6 6.8098 2.2782 -1.1943 8 8 6.7144 2.9734 -2.1873 9 7 8.0262 1.9460 -0.7185 10 6 9.2336 2.4211 -1.3987 11 6 10.4709 1.9053 -0.6611 12 1 10.5078 0.8182 -0.7312 13 6 11.7439 2.5071 -1.3061 14 6 12.9447 1.8264 -0.7978 15 6 13.1701 1.9862 0.7026 16 6 12.3769 0.9369 1.4419 17 6 10.9891 1.4887 1.8155 18 7 10.4005 2.2961 0.7290 19 6 9.7608 3.4632 1.0512 20 1 9.7233 4.2731 0.3377 21 6 9.1606 3.6053 2.2947 22 7 8.9278 2.5445 3.0383 23 14 8.6832 5.3022 2.9130 24 1 7.2620 5.5700 2.5758 25 1 8.8619 5.3608 4.3860 26 1 9.5460 6.3246 2.2685 27 7 5.5641 1.0242 0.5880 28 7 4.3413 0.7972 0.9213 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9952 2.6564 -1.7343 37 1 8.1023 1.3917 0.0739 38 1 9.2420 3.5111 -1.4049 39 1 9.2421 2.0519 -2.4242 40 1 11.6916 2.3864 -2.3882 41 1 11.8023 3.5688 -1.0664 42 1 13.8146 2.2213 -1.3225 43 1 12.8589 0.7634 -1.0235 44 1 12.8428 2.9775 1.0161 45 1 14.2300 1.8655 0.9264 46 1 12.9097 0.6540 2.3497 47 1 12.2579 0.0608 0.8045 48 1 11.0833 2.1094 2.7065 49 1 10.3248 0.6530 2.0353 50 1 8.5088 2.6438 3.9074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969093246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:26 Heat of formation + Delta-G solvation = 69.607746 kcal Electronic energy + Delta-G solvation = -30193.504772 eV Core-core repulsion = 26258.195302 eV Total energy + Delta-G solvation = -3935.309470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89415 -38.90113 -37.83218 -36.05308 -34.40611 -33.37785 -32.66026 -31.65081 -30.65705 -30.42094 -27.43886 -26.69857 -25.55365 -23.46845 -23.26130 -22.80120 -21.62624 -21.43321 -19.91704 -19.43537 -19.08537 -17.78627 -16.39434 -16.10215 -15.68119 -15.51724 -15.28170 -15.02808 -14.58207 -14.38483 -14.23415 -13.98370 -13.64806 -13.48302 -13.39687 -12.93146 -12.85874 -12.64209 -12.36244 -12.03393 -11.98105 -11.86559 -11.72782 -11.39742 -11.25832 -11.16281 -11.01761 -10.82531 -10.76729 -10.51958 -10.14685 -10.13752 -9.96147 -9.91561 -9.62893 -9.57950 -9.47165 -9.33545 -8.99168 -8.31885 -8.09371 -6.58187 -5.70899 -3.14655 1.38355 2.16926 2.19892 3.41320 3.49466 3.51271 3.82053 3.98256 4.22022 4.41889 4.53359 4.56399 4.73015 4.91039 5.00605 5.09788 5.22966 5.28669 5.32833 5.44781 5.49025 5.52333 5.57356 5.59486 5.71807 5.72075 5.84245 5.96396 6.08231 6.13783 6.17898 6.23532 6.38937 6.44641 6.53033 6.64072 6.69090 6.71992 6.78314 6.82443 6.91930 7.06942 7.17356 7.31650 7.50092 7.76300 7.92532 8.19062 8.49237 8.53357 8.95816 9.30892 9.95844 10.41383 11.35888 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.003367 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.658877 B = 8313.768905 C = 9068.352967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.123 3.877 4 N -0.369 5.369 5 C 0.080 3.920 6 C -0.087 4.087 7 C 0.597 3.403 8 O -0.567 6.567 9 N -0.670 5.670 10 C 0.129 3.871 11 C 0.173 3.827 12 H 0.044 0.956 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.106 4.106 16 C -0.143 4.143 17 C 0.181 3.819 18 N -0.582 5.582 19 C -0.255 4.255 20 H 0.062 0.938 21 C 0.017 3.983 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.184 5.184 28 N -0.071 5.071 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.200 0.800 37 H 0.420 0.580 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.025 0.975 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 -4.832 -7.553 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.002 3.998 4 N -0.155 5.155 5 C -0.077 4.077 6 C -0.226 4.226 7 C 0.380 3.620 8 O -0.447 6.447 9 N -0.318 5.318 10 C 0.004 3.996 11 C 0.064 3.936 12 H 0.062 0.938 13 C -0.177 4.177 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.056 3.944 18 N -0.304 5.304 19 C -0.385 4.385 20 H 0.079 0.921 21 C -0.183 4.183 22 N -0.535 5.535 23 Si 0.718 3.282 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.206 1.206 27 N -0.057 5.057 28 N -0.051 5.051 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.217 0.783 37 H 0.258 0.742 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.043 0.957 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.753 -5.273 -6.791 13.002 hybrid contribution -0.470 1.442 0.035 1.517 sum -10.223 -3.831 -6.756 12.839 Atomic orbital electron populations 1.21702 0.94102 1.02677 1.02228 1.21826 0.96675 0.94860 1.04245 1.22045 0.73225 0.99749 1.04790 1.50537 1.08466 1.36067 1.20383 1.23279 0.90404 0.97739 0.96255 1.21643 0.94701 1.07531 0.98771 1.16706 0.82121 0.80057 0.83141 1.90721 1.87019 1.40114 1.26871 1.45524 1.04007 1.51319 1.30978 1.21536 0.84043 1.00192 0.93783 1.20504 0.90929 0.96066 0.86112 0.93762 1.21377 0.96751 1.01300 0.98251 1.20285 0.97334 0.99813 0.96356 1.20945 0.97420 1.01303 0.94719 1.22070 0.99466 0.97732 0.98909 1.20988 0.87982 0.94463 0.90972 1.43678 1.62736 1.24598 0.99370 1.18951 1.28292 0.91254 0.99982 0.92064 1.24895 0.98099 0.96124 0.99153 1.70030 1.44737 1.26555 1.12170 0.86512 0.78269 0.85372 0.78000 1.21876 1.21763 1.20572 1.74797 1.12070 1.09642 1.09222 1.81983 0.93621 1.17667 1.11818 0.92141 0.92341 0.91776 0.91102 0.89971 0.88650 0.88059 0.78340 0.74183 0.91190 0.93033 0.93351 0.91820 0.94164 0.93553 0.90754 0.94300 0.93321 0.93820 0.90971 0.95656 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.14 -1.04 6.14 -26.73 -0.16 -1.20 16 3 C 0.12 1.01 6.54 -4.04 -0.03 0.98 16 4 N -0.37 -4.95 3.69 -61.06 -0.23 -5.17 16 5 C 0.08 1.15 11.27 -16.84 -0.19 0.96 16 6 C -0.09 -1.64 6.99 -83.55 -0.58 -2.22 16 7 C 0.60 12.38 7.82 -12.47 -0.10 12.28 16 8 O -0.57 -12.38 16.86 5.28 0.09 -12.29 16 9 N -0.67 -14.12 4.71 -61.35 -0.29 -14.41 16 10 C 0.13 2.55 4.52 -4.04 -0.02 2.53 16 11 C 0.17 3.35 2.19 -67.97 -0.15 3.20 16 12 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 13 C -0.14 -2.32 5.06 -28.58 -0.14 -2.47 16 14 C -0.10 -1.60 5.16 -29.79 -0.15 -1.76 16 15 C -0.11 -1.84 5.51 -28.02 -0.15 -1.99 16 16 C -0.14 -2.61 5.71 -27.30 -0.16 -2.77 16 17 C 0.18 4.05 4.66 -2.94 -0.01 4.04 16 18 N -0.58 -13.06 1.77 -164.46 -0.29 -13.35 16 19 C -0.26 -6.46 7.63 -15.06 -0.11 -6.58 16 20 H 0.06 1.61 6.74 -52.48 -0.35 1.26 16 21 C 0.02 0.45 4.85 -17.43 -0.08 0.37 16 22 N -0.89 -24.59 11.14 55.49 0.62 -23.98 16 23 Si 0.89 21.97 29.58 -169.99 -5.03 16.94 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 N -0.18 -3.71 12.04 32.85 0.40 -3.32 16 28 N -0.07 -1.25 13.65 60.35 0.82 -0.42 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.20 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.42 9.57 7.77 -40.82 -0.32 9.25 16 38 H 0.07 1.51 6.84 -51.93 -0.35 1.15 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 44 H 0.07 1.48 7.48 -51.93 -0.39 1.09 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.76 7.31 -51.93 -0.38 0.38 16 48 H 0.07 1.83 6.46 -51.93 -0.34 1.49 16 49 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -30.70 396.88 -8.01 -38.70 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.39 Total: 6.37 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.68 Total: 4.95 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 1.03 Total: -60.65 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.70 -8.01 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969093246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.310 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds