Wall clock time and date at job start Tue Mar 31 2020 19:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46811 * 2 1 4 4 N 1.46503 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.34816 * 126.59289 * 125.00329 * 4 3 2 6 6 C 1.36587 * 106.83986 * 179.97438 * 5 4 3 7 7 C 1.47529 * 125.77077 * 179.97438 * 6 5 4 8 8 O 1.21593 * 119.99842 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99852 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99889 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46906 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.42671 * 64.94435 * 11 10 9 13 13 C 1.54876 * 109.44558 * 184.87089 * 11 10 9 14 14 C 1.47095 * 110.31908 * 191.29239 * 13 11 10 15 15 C 1.52564 * 114.33428 * 297.19485 * 14 13 11 16 16 C 1.50886 * 109.34980 * 85.02486 * 15 14 13 17 17 C 1.53946 * 110.09485 * 268.11366 * 16 15 14 18 18 N 1.44572 * 109.45340 * 305.00304 * 11 10 9 19 19 C 1.36939 * 118.64530 * 329.26936 * 18 11 10 20 20 H 1.08003 * 119.99253 * 331.90154 * 19 18 11 21 21 C 1.38805 * 120.00246 * 151.90217 * 19 18 11 22 22 N 1.31621 * 120.00167 * 344.14280 * 21 19 18 23 23 Si 1.86808 * 119.99796 * 164.14735 * 21 19 18 24 24 H 1.48499 * 109.46880 * 94.37029 * 23 21 19 25 25 H 1.48502 * 109.46930 * 214.36506 * 23 21 19 26 26 H 1.48493 * 109.47061 * 334.36946 * 23 21 19 27 27 N 1.34404 * 108.46133 * 0.24516 * 6 5 4 28 28 N 1.28764 * 109.51757 * 359.58599 * 27 6 5 29 29 H 1.08998 * 109.46723 * 299.99203 * 1 2 3 30 30 H 1.08994 * 109.47516 * 60.00120 * 1 2 3 31 31 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46723 * 240.00797 * 2 1 3 33 33 H 1.09000 * 109.47231 * 120.00533 * 2 1 3 34 34 H 1.09001 * 109.47116 * 60.00426 * 3 2 1 35 35 H 1.09002 * 109.47180 * 300.00470 * 3 2 1 36 36 H 1.08000 * 126.57979 * 359.97438 * 5 4 3 37 37 H 0.97003 * 120.00391 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.46679 * 60.01081 * 10 9 7 39 39 H 1.08991 * 109.47551 * 300.00812 * 10 9 7 40 40 H 1.09000 * 109.33068 * 311.55360 * 13 11 10 41 41 H 1.09002 * 109.32747 * 71.03622 * 13 11 10 42 42 H 1.08997 * 108.50969 * 175.93596 * 14 13 11 43 43 H 1.09005 * 108.38705 * 58.35700 * 14 13 11 44 44 H 1.08999 * 109.49171 * 325.06310 * 15 14 13 45 45 H 1.08997 * 109.51143 * 204.99821 * 15 14 13 46 46 H 1.08994 * 109.36379 * 147.92506 * 16 15 14 47 47 H 1.08996 * 109.25956 * 28.24027 * 16 15 14 48 48 H 1.08998 * 108.94476 * 279.88121 * 17 16 15 49 49 H 1.08994 * 108.87728 * 161.20149 * 17 16 15 50 50 H 0.97000 * 119.99826 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0636 -0.8875 6 6 5.5939 1.7993 -0.5096 7 6 6.8098 2.2782 -1.1943 8 8 6.7144 2.9734 -2.1873 9 7 8.0262 1.9460 -0.7185 10 6 9.2336 2.4211 -1.3987 11 6 10.4709 1.9053 -0.6611 12 1 10.5078 0.8182 -0.7312 13 6 11.7439 2.5071 -1.3061 14 6 12.9447 1.8264 -0.7978 15 6 13.1701 1.9862 0.7026 16 6 12.3769 0.9369 1.4419 17 6 10.9891 1.4887 1.8155 18 7 10.4005 2.2961 0.7290 19 6 9.7608 3.4632 1.0512 20 1 9.7233 4.2731 0.3377 21 6 9.1606 3.6053 2.2947 22 7 8.9278 2.5445 3.0383 23 14 8.6832 5.3022 2.9130 24 1 7.2620 5.5700 2.5758 25 1 8.8619 5.3608 4.3860 26 1 9.5460 6.3246 2.2685 27 7 5.5641 1.0242 0.5880 28 7 4.3413 0.7972 0.9213 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9952 2.6564 -1.7343 37 1 8.1023 1.3917 0.0739 38 1 9.2420 3.5111 -1.4049 39 1 9.2421 2.0519 -2.4242 40 1 11.6916 2.3864 -2.3882 41 1 11.8023 3.5688 -1.0664 42 1 13.8146 2.2213 -1.3225 43 1 12.8589 0.7634 -1.0235 44 1 12.8428 2.9775 1.0161 45 1 14.2300 1.8655 0.9264 46 1 12.9097 0.6540 2.3497 47 1 12.2579 0.0608 0.8045 48 1 11.0833 2.1094 2.7065 49 1 10.3248 0.6530 2.0353 50 1 8.5088 2.6438 3.9074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969093246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:25 Heat of formation + Delta-G solvation = 50.521938 kcal Electronic energy + Delta-G solvation = -30194.332394 eV Core-core repulsion = 26258.195302 eV Total energy + Delta-G solvation = -3936.137093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.15948 -40.50619 -39.42090 -36.89853 -35.97162 -35.17781 -33.65108 -33.16788 -32.44197 -31.78064 -28.76314 -27.90225 -27.17292 -25.19053 -24.75003 -23.77628 -23.04290 -22.42122 -21.40554 -20.84554 -20.76173 -19.14762 -17.98921 -17.31419 -17.09590 -17.08481 -16.76470 -16.17531 -16.07748 -15.82382 -15.63255 -15.49004 -15.19233 -14.91119 -14.50161 -14.43328 -14.20170 -13.68837 -13.60013 -13.36251 -13.16678 -13.10431 -12.95488 -12.89279 -12.81027 -12.68197 -12.44073 -12.35670 -12.15821 -11.98954 -11.73646 -11.51225 -11.37038 -11.29857 -11.23467 -11.17806 -11.16431 -10.86437 -10.33388 -10.32370 -9.72744 -8.49784 -7.75229 -5.17641 0.20011 0.73427 1.17659 1.38496 1.43621 1.49230 2.30205 2.48728 2.55386 3.31048 3.40392 3.41211 3.64393 3.82517 3.86558 4.01806 4.07577 4.12334 4.16803 4.24328 4.30749 4.44649 4.46170 4.53391 4.56716 4.64599 4.69551 4.74631 4.82136 4.90053 5.04118 5.10292 5.11454 5.16187 5.17725 5.29275 5.30363 5.33156 5.41915 5.45686 5.55031 5.59095 5.66723 5.71654 5.79702 5.82779 5.92914 6.50403 6.66451 7.02112 7.30349 7.31736 8.05246 8.44295 9.28401 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.003367 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.658877 B = 8313.768905 C = 9068.352967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.350 5.350 5 C 0.105 3.895 6 C -0.125 4.125 7 C 0.594 3.406 8 O -0.583 6.583 9 N -0.679 5.679 10 C 0.132 3.868 11 C 0.170 3.830 12 H 0.052 0.948 13 C -0.126 4.126 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.131 4.131 17 C 0.190 3.810 18 N -0.587 5.587 19 C -0.234 4.234 20 H 0.052 0.948 21 C -0.027 4.027 22 N -0.913 5.913 23 Si 0.929 3.071 24 H -0.304 1.304 25 H -0.295 1.295 26 H -0.274 1.274 27 N -0.225 5.225 28 N -0.095 5.095 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.241 0.759 37 H 0.411 0.589 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.037 0.963 49 H -0.004 1.004 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -4.818 -9.783 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.135 5.135 5 C -0.053 4.053 6 C -0.265 4.265 7 C 0.379 3.621 8 O -0.464 6.464 9 N -0.325 5.325 10 C 0.007 3.993 11 C 0.063 3.937 12 H 0.070 0.930 13 C -0.166 4.166 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.170 4.170 17 C 0.066 3.934 18 N -0.309 5.309 19 C -0.365 4.365 20 H 0.070 0.930 21 C -0.223 4.223 22 N -0.559 5.559 23 Si 0.760 3.240 24 H -0.232 1.232 25 H -0.222 1.222 26 H -0.199 1.199 27 N -0.098 5.098 28 N -0.075 5.075 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.257 0.743 37 H 0.246 0.754 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.014 0.986 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.185 -5.265 -9.033 14.597 hybrid contribution -0.457 1.425 0.653 1.632 sum -10.642 -3.840 -8.381 14.080 Atomic orbital electron populations 1.21670 0.91941 1.03167 1.03314 1.21781 0.98376 0.94124 1.02908 1.22658 0.69967 1.00789 1.07471 1.50902 1.10075 1.33915 1.18610 1.23810 0.88890 0.96249 0.96344 1.21661 0.95637 1.09527 0.99661 1.16987 0.82586 0.79581 0.82965 1.90687 1.87361 1.40864 1.27515 1.45639 1.04784 1.51386 1.30722 1.21573 0.83912 0.98871 0.94917 1.20717 0.92057 0.96612 0.84342 0.93028 1.21271 0.95680 0.99947 0.99743 1.20276 0.97544 1.00630 0.95325 1.20904 0.98519 0.98932 0.95676 1.21930 0.96749 0.98338 1.00000 1.20742 0.89993 0.92679 0.90032 1.43746 1.62608 1.23820 1.00768 1.18956 1.26553 0.91838 0.99140 0.93045 1.25300 0.99381 0.97720 0.99935 1.70155 1.46386 1.27401 1.11964 0.85861 0.77216 0.83598 0.77324 1.23208 1.22205 1.19928 1.74767 1.13555 1.11027 1.10410 1.81866 0.93518 1.18890 1.13241 0.91637 0.90635 0.91666 0.91580 0.92285 0.87433 0.83880 0.74328 0.75357 0.93304 0.90856 0.90568 0.93696 0.91715 0.92190 0.93825 0.91775 0.92161 0.92362 0.94457 0.98615 0.94884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.79 6.14 30.60 0.19 -1.60 16 3 C 0.11 1.49 6.54 86.38 0.56 2.06 16 4 N -0.35 -8.89 3.69 -347.09 -1.28 -10.17 16 5 C 0.11 2.87 11.27 83.85 0.95 3.81 16 6 C -0.12 -4.74 6.99 40.82 0.29 -4.45 16 7 C 0.59 24.95 7.82 86.69 0.68 25.62 16 8 O -0.58 -25.24 16.86 -4.01 -0.07 -25.31 16 9 N -0.68 -29.25 4.71 -466.28 -2.20 -31.44 16 10 C 0.13 5.17 4.52 86.38 0.39 5.56 16 11 C 0.17 6.49 2.19 45.99 0.10 6.59 16 12 H 0.05 1.92 8.06 -2.39 -0.02 1.90 16 13 C -0.13 -4.03 5.06 29.40 0.15 -3.88 16 14 C -0.10 -2.88 5.16 28.61 0.15 -2.73 16 15 C -0.10 -3.34 5.51 29.76 0.16 -3.17 16 16 C -0.13 -4.65 5.71 30.23 0.17 -4.48 16 17 C 0.19 8.77 4.66 86.49 0.40 9.17 16 18 N -0.59 -26.82 1.77 -674.24 -1.20 -28.02 16 19 C -0.23 -12.17 7.63 84.03 0.64 -11.53 16 20 H 0.05 2.77 6.74 -2.91 -0.02 2.76 16 21 C -0.03 -1.47 4.85 84.86 0.41 -1.06 16 22 N -0.91 -52.75 11.14 21.65 0.24 -52.51 16 23 Si 0.93 46.47 29.58 68.60 2.03 48.50 16 24 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 25 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 26 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 27 N -0.22 -9.39 12.04 -49.99 -0.60 -10.00 16 28 N -0.09 -3.40 13.65 37.02 0.51 -2.90 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.14 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.41 19.47 7.77 -92.71 -0.72 18.75 16 38 H 0.05 2.12 6.84 -2.39 -0.02 2.10 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.08 2.04 8.11 -2.39 -0.02 2.03 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.60 7.35 -2.38 -0.02 1.58 16 44 H 0.04 1.70 7.48 -2.39 -0.02 1.68 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.06 1.91 7.31 -2.39 -0.02 1.89 16 48 H 0.04 1.96 6.46 -2.39 -0.02 1.94 16 49 H 0.00 -0.22 8.02 -2.39 -0.02 -0.24 16 50 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -70.84 396.88 3.60 -67.24 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.21 Total: 25.12 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 5.96 Total: 19.48 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -4.53 Total: -135.04 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.31 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -70.84 3.60 -67.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969093246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.765 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds