Wall clock time and date at job start Tue Mar 31 2020 19:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47325 * 2 1 4 4 N 1.46489 * 109.47217 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59277 * 124.99915 * 4 3 2 6 6 C 1.36592 * 106.84153 * 179.97438 * 5 4 3 7 7 C 1.47523 * 125.77236 * 179.97438 * 6 5 4 8 8 O 1.21597 * 120.00026 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00220 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00148 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.45221 * 295.00054 * 11 10 9 13 13 C 1.54862 * 109.42835 * 175.06795 * 11 10 9 14 14 C 1.47158 * 110.31746 * 168.74748 * 13 11 10 15 15 C 1.52559 * 114.34487 * 62.77469 * 14 13 11 16 16 C 1.50878 * 109.35232 * 274.99745 * 15 14 13 17 17 C 1.53946 * 110.09412 * 91.88432 * 16 15 14 18 18 N 1.44575 * 109.45013 * 54.94817 * 11 10 9 19 19 C 1.36939 * 118.64122 * 30.72977 * 18 11 10 20 20 H 1.08003 * 119.99612 * 27.77271 * 19 18 11 21 21 C 1.38810 * 120.00251 * 207.77439 * 19 18 11 22 22 N 1.31614 * 119.99882 * 14.61160 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 194.61578 * 21 19 18 24 24 H 1.48501 * 109.47091 * 89.99984 * 23 21 19 25 25 H 1.48496 * 109.47070 * 209.99537 * 23 21 19 26 26 H 1.48499 * 109.47375 * 329.99892 * 23 21 19 27 27 N 1.34407 * 108.45917 * 0.24573 * 6 5 4 28 28 N 1.28762 * 109.51807 * 359.58249 * 27 6 5 29 29 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46999 * 300.00403 * 1 2 3 31 31 H 1.08998 * 109.46694 * 60.00226 * 1 2 3 32 32 H 1.09002 * 109.47508 * 239.99536 * 2 1 3 33 33 H 1.09003 * 109.47157 * 119.99750 * 2 1 3 34 34 H 1.09002 * 109.46726 * 59.99576 * 3 2 1 35 35 H 1.09003 * 109.46799 * 299.99969 * 3 2 1 36 36 H 1.08001 * 126.58100 * 0.02562 * 5 4 3 37 37 H 0.97006 * 120.00167 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47094 * 60.00576 * 10 9 7 39 39 H 1.08994 * 109.47692 * 300.00280 * 10 9 7 40 40 H 1.08997 * 109.33106 * 288.98430 * 13 11 10 41 41 H 1.09000 * 109.33234 * 48.46232 * 13 11 10 42 42 H 1.08998 * 108.48778 * 301.52621 * 14 13 11 43 43 H 1.09003 * 108.39991 * 183.95949 * 14 13 11 44 44 H 1.09001 * 109.49374 * 155.03274 * 15 14 13 45 45 H 1.09004 * 109.48878 * 34.96075 * 15 14 13 46 46 H 1.09003 * 109.36229 * 331.69520 * 16 15 14 47 47 H 1.09006 * 109.26631 * 212.01805 * 16 15 14 48 48 H 1.09003 * 108.94154 * 198.75299 * 17 16 15 49 49 H 1.08998 * 108.94488 * 80.12696 * 17 16 15 50 50 H 0.97006 * 120.00446 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0632 -0.8858 6 6 5.5944 1.7989 -0.5068 7 6 6.8109 2.2775 -1.1906 8 8 6.7164 2.9724 -2.1840 9 7 8.0269 1.9446 -0.7143 10 6 9.2349 2.4203 -1.3930 11 6 10.4715 1.9046 -0.6544 12 1 10.5086 2.3441 0.3424 13 6 11.7447 2.3026 -1.4411 14 6 12.9458 2.0580 -0.6268 15 6 13.1700 0.5941 -0.2607 16 6 12.3762 0.2614 0.9785 17 6 10.9881 -0.2781 0.5886 18 7 10.4004 0.4649 -0.5433 19 6 9.7608 -0.2387 -1.5288 20 1 9.7194 0.1553 -2.5335 21 6 9.1656 -1.4582 -1.2364 22 7 8.9594 -1.8063 0.0160 23 14 8.6575 -2.6052 -2.6205 24 1 9.7842 -3.5153 -2.9480 25 1 7.4823 -3.4062 -2.1933 26 1 8.3019 -1.8059 -3.8205 27 7 5.5637 1.0242 0.5911 28 7 4.3405 0.7974 0.9235 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9968 2.6563 -1.7327 37 1 8.1023 1.3900 0.0780 38 1 9.2434 3.5103 -1.3980 39 1 9.2441 2.0523 -2.4189 40 1 11.8030 1.7126 -2.3556 41 1 11.6931 3.3602 -1.6999 42 1 12.8631 2.6362 0.2935 43 1 13.8150 2.4134 -1.1804 44 1 14.2298 0.4250 -0.0700 45 1 12.8424 -0.0409 -1.0839 46 1 12.2578 1.1601 1.5839 47 1 12.9093 -0.4949 1.5548 48 1 10.3229 -0.1977 1.4483 49 1 11.0815 -1.3283 0.3123 50 1 8.5432 -2.6584 0.2204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969093247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:30 Heat of formation + Delta-G solvation = 69.709389 kcal Electronic energy + Delta-G solvation = -30242.275997 eV Core-core repulsion = 26306.970935 eV Total energy + Delta-G solvation = -3935.305062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90067 -38.90479 -37.83215 -36.04165 -34.40731 -33.38460 -32.65254 -31.65236 -30.65206 -30.42281 -27.43500 -26.69783 -25.55701 -23.46524 -23.26424 -22.78853 -21.62944 -21.42776 -19.91854 -19.43656 -19.08102 -17.78938 -16.40096 -16.08184 -15.72756 -15.50766 -15.20735 -15.09400 -14.56135 -14.41147 -14.21060 -13.95374 -13.69758 -13.47293 -13.35968 -12.99854 -12.79159 -12.63975 -12.35438 -12.00430 -11.98078 -11.86660 -11.71994 -11.40053 -11.22474 -11.16819 -11.00281 -10.83142 -10.78636 -10.51744 -10.15038 -10.13046 -9.95730 -9.91358 -9.63029 -9.57440 -9.47843 -9.33408 -8.99882 -8.31686 -8.10020 -6.59040 -5.70567 -3.14929 1.37482 2.17358 2.18468 3.41367 3.49238 3.50409 3.81442 3.97878 4.22417 4.43843 4.53212 4.56013 4.74557 4.92889 5.00504 5.09608 5.24711 5.28778 5.32460 5.44937 5.50135 5.52495 5.57411 5.64051 5.72017 5.73741 5.88111 5.96419 6.08348 6.13500 6.17734 6.23592 6.38801 6.44734 6.52627 6.64162 6.69148 6.72075 6.78422 6.82436 6.92365 7.06922 7.17389 7.31193 7.51514 7.78255 7.92354 8.18366 8.48525 8.53315 8.95179 9.31090 9.95722 10.40925 11.36088 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003483 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.840293 B = 8036.046359 C = 8924.182481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.124 3.876 4 N -0.369 5.369 5 C 0.080 3.920 6 C -0.087 4.087 7 C 0.596 3.404 8 O -0.567 6.567 9 N -0.670 5.670 10 C 0.129 3.871 11 C 0.173 3.827 12 H 0.045 0.955 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.106 4.106 16 C -0.143 4.143 17 C 0.180 3.820 18 N -0.582 5.582 19 C -0.254 4.254 20 H 0.063 0.937 21 C 0.016 3.984 22 N -0.893 5.893 23 Si 0.889 3.111 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.281 1.281 27 N -0.184 5.184 28 N -0.070 5.070 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.200 0.800 37 H 0.420 0.580 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.025 0.975 49 H 0.074 0.926 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 7.743 1.155 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.003 3.997 4 N -0.155 5.155 5 C -0.077 4.077 6 C -0.227 4.227 7 C 0.380 3.620 8 O -0.447 6.447 9 N -0.318 5.318 10 C 0.004 3.996 11 C 0.064 3.936 12 H 0.063 0.937 13 C -0.177 4.177 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.056 3.944 18 N -0.304 5.304 19 C -0.384 4.384 20 H 0.080 0.920 21 C -0.183 4.183 22 N -0.537 5.537 23 Si 0.720 3.280 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.206 1.206 27 N -0.057 5.057 28 N -0.051 5.051 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.217 0.783 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.866 7.189 1.831 12.344 hybrid contribution -0.456 -0.495 -1.326 1.487 sum -10.322 6.694 0.504 12.313 Atomic orbital electron populations 1.21698 0.94087 1.02723 1.02119 1.21844 0.96672 0.94853 1.04460 1.22036 0.73192 0.99801 1.04656 1.50547 1.08483 1.35837 1.20595 1.23284 0.90388 0.97898 0.96091 1.21648 0.94706 1.07190 0.99141 1.16707 0.82118 0.80103 0.83108 1.90724 1.87024 1.40731 1.26221 1.45527 1.04022 1.50856 1.31443 1.21540 0.84027 0.96267 0.97729 1.20505 0.90931 0.86426 0.95754 0.93734 1.21388 0.96752 0.99414 1.00123 1.20295 0.97333 0.96888 0.99275 1.20944 0.97419 0.96525 0.99487 1.22074 0.99506 0.99842 0.96771 1.21007 0.87918 0.96199 0.89319 1.43687 1.62822 0.98867 1.25051 1.18991 1.28255 1.01828 0.89329 0.91978 1.24899 0.98208 0.99784 0.95423 1.70019 1.45421 1.22308 1.15934 0.86498 0.77714 0.81459 0.82378 1.21609 1.22058 1.20637 1.74801 1.12058 1.08608 1.10281 1.81986 0.93641 1.17564 1.11885 0.91752 0.92193 0.92361 0.90986 0.89937 0.88687 0.88076 0.78328 0.74203 0.93022 0.91193 0.91828 0.93344 0.93540 0.94181 0.94304 0.90765 0.93837 0.93342 0.95681 0.90763 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.17 6.14 -26.73 -0.16 -1.33 16 3 C 0.12 1.01 6.54 -4.05 -0.03 0.98 16 4 N -0.37 -4.91 3.69 -61.07 -0.23 -5.14 16 5 C 0.08 1.15 11.27 -16.83 -0.19 0.96 16 6 C -0.09 -1.64 6.99 -83.55 -0.58 -2.22 16 7 C 0.60 12.34 7.82 -12.48 -0.10 12.24 16 8 O -0.57 -12.35 16.86 5.28 0.09 -12.26 16 9 N -0.67 -14.09 4.71 -61.35 -0.29 -14.38 16 10 C 0.13 2.54 4.52 -4.04 -0.02 2.52 16 11 C 0.17 3.35 2.19 -67.98 -0.15 3.20 16 12 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 13 C -0.14 -2.32 5.07 -28.56 -0.14 -2.47 16 14 C -0.10 -1.61 5.16 -29.76 -0.15 -1.76 16 15 C -0.11 -1.84 5.51 -28.02 -0.15 -2.00 16 16 C -0.14 -2.62 5.71 -27.30 -0.16 -2.78 16 17 C 0.18 4.05 4.66 -2.95 -0.01 4.04 16 18 N -0.58 -13.08 1.78 -164.47 -0.29 -13.37 16 19 C -0.25 -6.44 7.64 -15.06 -0.12 -6.56 16 20 H 0.06 1.63 6.72 -52.48 -0.35 1.28 16 21 C 0.02 0.44 4.89 -17.43 -0.09 0.35 16 22 N -0.89 -24.65 11.03 55.49 0.61 -24.04 16 23 Si 0.89 22.00 29.58 -169.99 -5.03 16.97 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 27 N -0.18 -3.70 12.04 32.85 0.40 -3.31 16 28 N -0.07 -1.24 13.65 60.35 0.82 -0.41 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.42 9.54 7.76 -40.82 -0.32 9.22 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.51 6.83 -51.93 -0.35 1.15 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 42 H 0.05 0.72 7.36 -51.93 -0.38 0.33 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.48 7.48 -51.93 -0.39 1.09 16 46 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 49 H 0.07 1.89 6.39 -51.93 -0.33 1.55 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -30.68 396.75 -8.01 -38.69 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.39 Total: 6.59 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.68 Total: 4.69 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 1.02 Total: -60.65 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.68 -8.01 -38.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969093247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.397 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds