Wall clock time and date at job start Tue Mar 31 2020 19:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47325 * 2 1 4 4 N 1.46489 * 109.47217 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59277 * 124.99915 * 4 3 2 6 6 C 1.36592 * 106.84153 * 179.97438 * 5 4 3 7 7 C 1.47523 * 125.77236 * 179.97438 * 6 5 4 8 8 O 1.21597 * 120.00026 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00220 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00148 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.45221 * 295.00054 * 11 10 9 13 13 C 1.54862 * 109.42835 * 175.06795 * 11 10 9 14 14 C 1.47158 * 110.31746 * 168.74748 * 13 11 10 15 15 C 1.52559 * 114.34487 * 62.77469 * 14 13 11 16 16 C 1.50878 * 109.35232 * 274.99745 * 15 14 13 17 17 C 1.53946 * 110.09412 * 91.88432 * 16 15 14 18 18 N 1.44575 * 109.45013 * 54.94817 * 11 10 9 19 19 C 1.36939 * 118.64122 * 30.72977 * 18 11 10 20 20 H 1.08003 * 119.99612 * 27.77271 * 19 18 11 21 21 C 1.38810 * 120.00251 * 207.77439 * 19 18 11 22 22 N 1.31614 * 119.99882 * 14.61160 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 194.61578 * 21 19 18 24 24 H 1.48501 * 109.47091 * 89.99984 * 23 21 19 25 25 H 1.48496 * 109.47070 * 209.99537 * 23 21 19 26 26 H 1.48499 * 109.47375 * 329.99892 * 23 21 19 27 27 N 1.34407 * 108.45917 * 0.24573 * 6 5 4 28 28 N 1.28762 * 109.51807 * 359.58249 * 27 6 5 29 29 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46999 * 300.00403 * 1 2 3 31 31 H 1.08998 * 109.46694 * 60.00226 * 1 2 3 32 32 H 1.09002 * 109.47508 * 239.99536 * 2 1 3 33 33 H 1.09003 * 109.47157 * 119.99750 * 2 1 3 34 34 H 1.09002 * 109.46726 * 59.99576 * 3 2 1 35 35 H 1.09003 * 109.46799 * 299.99969 * 3 2 1 36 36 H 1.08001 * 126.58100 * 0.02562 * 5 4 3 37 37 H 0.97006 * 120.00167 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47094 * 60.00576 * 10 9 7 39 39 H 1.08994 * 109.47692 * 300.00280 * 10 9 7 40 40 H 1.08997 * 109.33106 * 288.98430 * 13 11 10 41 41 H 1.09000 * 109.33234 * 48.46232 * 13 11 10 42 42 H 1.08998 * 108.48778 * 301.52621 * 14 13 11 43 43 H 1.09003 * 108.39991 * 183.95949 * 14 13 11 44 44 H 1.09001 * 109.49374 * 155.03274 * 15 14 13 45 45 H 1.09004 * 109.48878 * 34.96075 * 15 14 13 46 46 H 1.09003 * 109.36229 * 331.69520 * 16 15 14 47 47 H 1.09006 * 109.26631 * 212.01805 * 16 15 14 48 48 H 1.09003 * 108.94154 * 198.75299 * 17 16 15 49 49 H 1.08998 * 108.94488 * 80.12696 * 17 16 15 50 50 H 0.97006 * 120.00446 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0632 -0.8858 6 6 5.5944 1.7989 -0.5068 7 6 6.8109 2.2775 -1.1906 8 8 6.7164 2.9724 -2.1840 9 7 8.0269 1.9446 -0.7143 10 6 9.2349 2.4203 -1.3930 11 6 10.4715 1.9046 -0.6544 12 1 10.5086 2.3441 0.3424 13 6 11.7447 2.3026 -1.4411 14 6 12.9458 2.0580 -0.6268 15 6 13.1700 0.5941 -0.2607 16 6 12.3762 0.2614 0.9785 17 6 10.9881 -0.2781 0.5886 18 7 10.4004 0.4649 -0.5433 19 6 9.7608 -0.2387 -1.5288 20 1 9.7194 0.1553 -2.5335 21 6 9.1656 -1.4582 -1.2364 22 7 8.9594 -1.8063 0.0160 23 14 8.6575 -2.6052 -2.6205 24 1 9.7842 -3.5153 -2.9480 25 1 7.4823 -3.4062 -2.1933 26 1 8.3019 -1.8059 -3.8205 27 7 5.5637 1.0242 0.5911 28 7 4.3405 0.7974 0.9235 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9968 2.6563 -1.7327 37 1 8.1023 1.3900 0.0780 38 1 9.2434 3.5103 -1.3980 39 1 9.2441 2.0523 -2.4189 40 1 11.8030 1.7126 -2.3556 41 1 11.6931 3.3602 -1.6999 42 1 12.8631 2.6362 0.2935 43 1 13.8150 2.4134 -1.1804 44 1 14.2298 0.4250 -0.0700 45 1 12.8424 -0.0409 -1.0839 46 1 12.2578 1.1601 1.5839 47 1 12.9093 -0.4949 1.5548 48 1 10.3229 -0.1977 1.4483 49 1 11.0815 -1.3283 0.3123 50 1 8.5432 -2.6584 0.2204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969093247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:29 Heat of formation + Delta-G solvation = 50.581942 kcal Electronic energy + Delta-G solvation = -30243.105426 eV Core-core repulsion = 26306.970935 eV Total energy + Delta-G solvation = -3936.134491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.15883 -40.50766 -39.42130 -36.90447 -35.97227 -35.18743 -33.66021 -33.17049 -32.43614 -31.78112 -28.76566 -27.90663 -27.17790 -25.18890 -24.75250 -23.78506 -23.04450 -22.42922 -21.40790 -20.84643 -20.75999 -19.14853 -17.99140 -17.31753 -17.16959 -17.02746 -16.74303 -16.26412 -15.95561 -15.90985 -15.64101 -15.43929 -15.19456 -14.94712 -14.49859 -14.44743 -14.18870 -13.68952 -13.60312 -13.36064 -13.16128 -13.11525 -12.96926 -12.86351 -12.80625 -12.71145 -12.46783 -12.36650 -12.15321 -11.99268 -11.75787 -11.51117 -11.37545 -11.30431 -11.23246 -11.17868 -11.16831 -10.86159 -10.33249 -10.32298 -9.72998 -8.50781 -7.75453 -5.18275 0.19976 0.73388 1.18123 1.38834 1.42757 1.47055 2.30117 2.48536 2.54551 3.31060 3.40028 3.40710 3.64292 3.81952 3.86383 4.01878 4.07622 4.12238 4.16065 4.23183 4.30583 4.43703 4.45622 4.53252 4.56592 4.64570 4.69487 4.73893 4.80970 4.89771 5.04013 5.09628 5.11370 5.15640 5.16204 5.29210 5.30517 5.31426 5.41832 5.45592 5.55138 5.58908 5.66704 5.71593 5.79677 5.82402 5.94292 6.49924 6.66301 7.02119 7.30003 7.31612 8.04959 8.43517 9.28041 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003483 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.840293 B = 8036.046359 C = 8924.182481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.112 3.888 4 N -0.350 5.350 5 C 0.106 3.894 6 C -0.125 4.125 7 C 0.594 3.406 8 O -0.583 6.583 9 N -0.679 5.679 10 C 0.132 3.868 11 C 0.171 3.829 12 H 0.052 0.948 13 C -0.126 4.126 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.190 3.810 18 N -0.587 5.587 19 C -0.233 4.233 20 H 0.053 0.947 21 C -0.027 4.027 22 N -0.915 5.915 23 Si 0.929 3.071 24 H -0.287 1.287 25 H -0.306 1.306 26 H -0.282 1.282 27 N -0.225 5.225 28 N -0.095 5.095 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.143 0.857 36 H 0.241 0.759 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.059 0.941 48 H -0.004 1.004 49 H 0.038 0.962 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 10.091 0.523 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C -0.006 4.006 4 N -0.135 5.135 5 C -0.052 4.052 6 C -0.265 4.265 7 C 0.379 3.621 8 O -0.464 6.464 9 N -0.326 5.326 10 C 0.007 3.993 11 C 0.063 3.937 12 H 0.070 0.930 13 C -0.167 4.167 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.170 4.170 17 C 0.065 3.935 18 N -0.310 5.310 19 C -0.364 4.364 20 H 0.070 0.930 21 C -0.224 4.224 22 N -0.561 5.561 23 Si 0.761 3.239 24 H -0.214 1.214 25 H -0.233 1.233 26 H -0.207 1.207 27 N -0.098 5.098 28 N -0.075 5.075 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.161 0.839 36 H 0.257 0.743 37 H 0.246 0.754 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.014 0.986 49 H 0.057 0.943 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.390 9.552 1.199 14.164 hybrid contribution -0.413 -1.165 -1.151 1.689 sum -10.802 8.387 0.048 13.676 Atomic orbital electron populations 1.21660 0.91674 1.03049 1.03541 1.21810 0.98644 0.94684 1.02527 1.22645 0.69919 1.00232 1.07825 1.50908 1.10094 1.33657 1.18854 1.23814 0.88867 0.96448 0.96110 1.21656 0.95628 1.09118 1.00083 1.16989 0.82584 0.79634 0.82907 1.90690 1.87370 1.41535 1.26828 1.45640 1.04793 1.50902 1.31218 1.21573 0.83909 0.97431 0.96361 1.20718 0.92062 0.84345 0.96600 0.92966 1.21283 0.95678 1.00717 0.98980 1.20284 0.97549 0.95915 1.00017 1.20902 0.98506 0.97085 0.97532 1.21932 0.96781 1.00574 0.97746 1.20754 0.89931 0.94742 0.88045 1.43750 1.62695 1.00260 1.24273 1.18987 1.26517 1.01410 0.89472 0.92970 1.25300 0.99523 1.01154 0.96397 1.70147 1.47050 1.21998 1.16874 0.85850 0.76942 0.80290 0.80861 1.21394 1.23327 1.20713 1.74769 1.13551 1.09927 1.11562 1.81869 0.93537 1.18732 1.13374 0.92071 0.91033 0.90620 0.92555 0.92367 0.86484 0.83910 0.74305 0.75368 0.90821 0.93362 0.93698 0.90542 0.92155 0.91736 0.91793 0.93860 0.92341 0.92222 0.98627 0.94303 0.94892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.14 -2.12 6.14 30.60 0.19 -1.93 16 3 C 0.11 1.49 6.54 86.38 0.56 2.05 16 4 N -0.35 -8.79 3.69 -347.11 -1.28 -10.07 16 5 C 0.11 2.85 11.27 83.85 0.95 3.80 16 6 C -0.12 -4.70 6.99 40.81 0.29 -4.42 16 7 C 0.59 24.84 7.82 86.69 0.68 25.52 16 8 O -0.58 -25.17 16.86 -4.02 -0.07 -25.24 16 9 N -0.68 -29.17 4.71 -466.28 -2.20 -31.37 16 10 C 0.13 5.17 4.52 86.38 0.39 5.56 16 11 C 0.17 6.49 2.19 45.99 0.10 6.59 16 12 H 0.05 1.94 8.07 -2.38 -0.02 1.92 16 13 C -0.13 -4.04 5.07 29.41 0.15 -3.89 16 14 C -0.10 -2.88 5.16 28.63 0.15 -2.73 16 15 C -0.10 -3.35 5.51 29.76 0.16 -3.19 16 16 C -0.13 -4.67 5.71 30.22 0.17 -4.50 16 17 C 0.19 8.78 4.66 86.49 0.40 9.18 16 18 N -0.59 -26.87 1.78 -674.26 -1.20 -28.07 16 19 C -0.23 -12.14 7.64 84.03 0.64 -11.50 16 20 H 0.05 2.82 6.72 -2.91 -0.02 2.80 16 21 C -0.03 -1.50 4.89 84.86 0.41 -1.08 16 22 N -0.91 -52.96 11.03 21.65 0.24 -52.72 16 23 Si 0.93 46.64 29.58 68.60 2.03 48.67 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 26 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 27 N -0.23 -9.37 12.04 -49.99 -0.60 -9.97 16 28 N -0.09 -3.38 13.65 37.02 0.51 -2.88 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.24 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.41 19.40 7.76 -92.70 -0.72 18.68 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 39 H 0.05 2.10 6.83 -2.39 -0.02 2.08 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 42 H 0.06 1.61 7.36 -2.39 -0.02 1.59 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.04 1.69 7.48 -2.38 -0.02 1.67 16 46 H 0.06 1.92 7.32 -2.39 -0.02 1.90 16 47 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.00 -0.22 8.02 -2.39 -0.02 -0.24 16 49 H 0.04 2.05 6.39 -2.39 -0.02 2.04 16 50 H 0.24 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -71.17 396.75 3.60 -67.57 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.21 Total: 25.18 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.96 Total: 18.90 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -4.53 Total: -135.08 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.07 Total: -25.24 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -71.17 3.60 -67.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969093247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.153 kcal (2) G-P(sol) polarization free energy of solvation -71.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds