Wall clock time and date at job start Tue Mar 31 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47458 * 2 1 4 4 C 1.53004 * 109.46894 * 239.99574 * 2 1 3 5 5 N 1.46503 * 109.46685 * 120.00368 * 2 1 3 6 6 C 1.34583 * 125.75225 * 75.00119 * 5 2 1 7 7 N 1.30871 * 107.62411 * 180.29712 * 6 5 2 8 8 C 1.34553 * 107.26862 * 359.58238 * 7 6 5 9 9 C 1.47873 * 126.04552 * 180.20042 * 8 7 6 10 10 O 1.21554 * 119.99645 * 180.25914 * 9 8 7 11 11 N 1.34778 * 120.00208 * 0.25816 * 9 8 7 12 12 C 1.46491 * 120.00148 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.46979 * 34.99733 * 12 11 9 14 14 C 1.52998 * 109.47029 * 274.99964 * 12 11 9 15 15 C 1.53002 * 109.47103 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47329 * 59.99841 * 15 14 12 17 17 C 1.52998 * 109.47158 * 300.00125 * 16 15 14 18 18 H 1.08997 * 109.47373 * 299.99725 * 17 16 15 19 19 N 1.46501 * 109.47242 * 179.97438 * 17 16 15 20 20 C 1.36942 * 119.99899 * 84.99821 * 19 17 16 21 21 H 1.07996 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38808 * 119.99959 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00019 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00141 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47288 * 59.99911 * 24 22 20 26 26 H 1.48504 * 109.47405 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47405 * 300.00079 * 24 22 20 28 28 C 1.52997 * 109.47133 * 60.00057 * 17 16 15 29 29 N 1.28855 * 125.74491 * 255.03461 * 5 2 1 30 30 H 1.09001 * 109.46914 * 300.00633 * 1 2 3 31 31 H 1.08998 * 109.46694 * 59.99703 * 1 2 3 32 32 H 1.08992 * 109.47381 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46448 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46926 * 299.99717 * 3 2 1 35 35 H 1.08995 * 109.46930 * 59.99965 * 3 2 1 36 36 H 1.08999 * 109.47540 * 300.00482 * 4 2 1 37 37 H 1.08998 * 109.46860 * 60.00824 * 4 2 1 38 38 H 1.09004 * 109.47064 * 180.02562 * 4 2 1 39 39 H 1.08002 * 126.18341 * 0.02562 * 6 5 2 40 40 H 0.97004 * 119.99502 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.47373 * 300.00029 * 14 12 11 42 42 H 1.09000 * 109.47057 * 60.00257 * 14 12 11 43 43 H 1.09003 * 109.47033 * 299.99327 * 15 14 12 44 44 H 1.08999 * 109.46944 * 180.02562 * 15 14 12 45 45 H 1.09004 * 109.47486 * 179.97438 * 16 15 14 46 46 H 1.09008 * 109.47164 * 60.00086 * 16 15 14 47 47 H 0.97004 * 120.00195 * 265.00110 * 19 17 16 48 48 H 0.97002 * 120.00143 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.47278 * 180.02562 * 28 17 16 50 50 H 1.08999 * 109.47686 * 60.00240 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0222 1.3922 7 7 2.5218 -2.2500 2.5766 8 6 2.8482 -1.0574 3.1074 9 6 3.4590 -0.8339 4.4354 10 8 3.7051 0.2965 4.8086 11 7 3.7427 -1.8834 5.2320 12 6 4.3471 -1.6619 6.5479 13 1 3.9561 -0.7391 6.9767 14 6 5.8659 -1.5517 6.3994 15 6 6.4973 -1.3210 7.7738 16 6 6.1588 -2.4952 8.6942 17 6 4.6400 -2.6054 8.8427 18 1 4.2490 -1.6829 9.2719 19 7 4.3158 -3.7302 9.7236 20 6 4.3041 -3.5550 11.0817 21 1 4.5336 -2.5876 11.5034 22 6 3.9964 -4.6206 11.9163 23 7 3.7163 -5.7995 11.4024 24 14 3.9798 -4.3815 13.7689 25 1 2.9774 -3.3455 14.1254 26 1 3.6236 -5.6625 14.4302 27 1 5.3247 -3.9462 14.2239 28 6 4.0086 -2.8362 7.4684 29 7 2.5238 -0.1257 2.2381 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1302 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7218 -1.2490 39 1 1.6520 -2.7675 0.6994 40 1 3.5458 -2.7854 4.9342 41 1 6.2570 -2.4743 5.9706 42 1 6.1071 -0.7153 5.7433 43 1 6.1065 -0.3984 8.2029 44 1 7.5793 -1.2421 7.6679 45 1 6.6090 -2.3311 9.6733 46 1 6.5498 -3.4178 8.2650 47 1 4.1093 -4.5990 9.3449 48 1 3.5008 -6.5441 11.9856 49 1 2.9265 -2.9142 7.5741 50 1 4.3995 -3.7587 7.0391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981338138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:53 Heat of formation + Delta-G solvation = 48.972046 kcal Electronic energy + Delta-G solvation = -28839.403208 eV Core-core repulsion = 24903.198907 eV Total energy + Delta-G solvation = -3936.204301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.75209 -39.78027 -38.00829 -37.55880 -34.64654 -33.39697 -32.75238 -31.32238 -31.05223 -29.30703 -28.19353 -28.06668 -27.72459 -24.90183 -23.64076 -23.30407 -21.92704 -21.27674 -20.46212 -20.23233 -19.41148 -18.05320 -17.08081 -16.84735 -16.66534 -16.21197 -15.33308 -15.02228 -14.79674 -14.53286 -14.38841 -14.30282 -13.83011 -13.68417 -13.43426 -13.38435 -13.09584 -13.08823 -12.94637 -12.63230 -12.47183 -12.35230 -12.08245 -12.02481 -11.94192 -11.60891 -10.94578 -10.88493 -10.82268 -10.66059 -10.65018 -10.61484 -10.35832 -10.27986 -10.15773 -10.10198 -9.77160 -9.69595 -9.55834 -8.91308 -8.80256 -6.90833 -5.71789 -3.00177 1.24660 1.79464 1.90741 3.01773 3.35655 3.47979 3.52216 3.53170 3.72594 3.92668 3.99270 4.10041 4.39197 4.59934 4.62991 4.75012 4.87507 4.93479 4.99099 5.06038 5.07076 5.15147 5.16448 5.28016 5.40388 5.45846 5.56291 5.63414 5.67956 5.75894 5.78138 5.83297 5.95517 6.04451 6.08840 6.10492 6.21533 6.25527 6.37471 6.40318 6.59295 6.61156 6.69408 6.80127 7.03460 7.19276 7.48042 7.75240 7.86344 8.22409 8.47048 9.58003 10.15916 10.50812 11.50892 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.002004 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.819943 B =13969.827182 C =14506.409608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.188 3.812 7 N -0.482 5.482 8 C 0.140 3.860 9 C 0.614 3.386 10 O -0.522 6.522 11 N -0.701 5.701 12 C 0.151 3.849 13 H 0.090 0.910 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.129 4.129 29 N -0.248 5.248 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.409 0.591 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.070 0.930 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 10.257 -30.393 32.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.107 4.107 7 N -0.208 5.208 8 C -0.139 4.139 9 C 0.396 3.604 10 O -0.395 6.395 11 N -0.352 5.352 12 C 0.047 3.953 13 H 0.108 0.892 14 C -0.163 4.163 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.364 5.364 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.168 4.168 29 N -0.086 5.086 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.244 0.756 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.101 11.496 -29.615 32.031 hybrid contribution -0.340 -0.950 0.371 1.075 sum -4.441 10.546 -29.244 31.403 Atomic orbital electron populations 1.22271 0.91666 1.03704 1.04205 1.21177 0.95361 0.94371 0.80635 1.22001 1.02602 0.92221 1.03834 1.22265 1.02726 1.01183 0.95652 1.47798 1.41557 1.06261 1.13429 1.26311 1.01770 0.86456 0.96176 1.71296 1.16493 1.25973 1.06998 1.23844 1.06266 0.85655 0.98168 1.16294 0.77982 0.85139 0.81017 1.90823 1.52935 1.22527 1.73168 1.45871 1.62227 1.09364 1.17780 1.21113 0.92895 1.00384 0.80953 0.89204 1.21898 0.94596 1.01726 0.98129 1.21482 0.99507 0.99559 0.94718 1.22292 0.99818 0.96770 0.98840 1.20098 0.91727 0.92555 0.88307 0.93308 1.42398 1.83046 1.08420 1.02570 1.19206 1.39276 0.95627 0.82613 0.91194 1.24735 1.02682 0.95767 0.97904 1.69653 1.53992 1.00672 1.33947 0.86277 0.77746 0.76570 0.85656 1.21311 1.21775 1.21309 1.22094 1.01734 0.96785 0.96184 1.74292 1.13389 1.25442 0.95474 0.91178 0.89539 0.91281 0.91246 0.90288 0.90470 0.91075 0.89280 0.91113 0.76252 0.75561 0.91893 0.92114 0.92126 0.92483 0.91893 0.92620 0.78299 0.93540 0.91172 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 8.72 37.16 0.32 -0.26 16 2 C 0.17 0.84 1.23 -131.81 -0.16 0.68 16 3 C -0.15 -0.82 8.05 37.16 0.30 -0.52 16 4 C -0.16 -0.40 8.28 37.16 0.31 -0.09 16 5 N -0.29 -2.61 3.17 -49.83 -0.16 -2.77 16 6 C 0.19 1.58 11.71 -90.48 -1.06 0.52 16 7 N -0.48 -5.83 11.09 -12.36 -0.14 -5.96 16 8 C 0.14 2.00 7.96 -156.35 -1.24 0.76 16 9 C 0.61 9.78 7.80 -12.32 -0.10 9.68 16 10 O -0.52 -9.83 16.75 5.32 0.09 -9.74 16 11 N -0.70 -10.01 5.07 -54.74 -0.28 -10.28 16 12 C 0.15 2.29 2.45 -67.94 -0.17 2.13 16 13 H 0.09 1.50 7.58 -51.92 -0.39 1.11 16 14 C -0.12 -1.81 5.49 -26.73 -0.15 -1.96 16 15 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 16 C -0.14 -2.47 5.50 -26.74 -0.15 -2.62 16 17 C 0.18 3.67 2.77 -67.93 -0.19 3.48 16 18 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 19 N -0.72 -18.17 5.12 -53.43 -0.27 -18.44 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 24 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C -0.13 -2.16 4.86 -26.73 -0.13 -2.29 16 29 N -0.25 -3.25 11.09 32.07 0.36 -2.89 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.57 8.02 -51.93 -0.42 0.16 16 36 H 0.07 0.09 7.34 -51.93 -0.38 -0.29 16 37 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.22 0.79 7.53 -52.49 -0.39 0.39 16 40 H 0.41 5.26 8.31 -40.82 -0.34 4.92 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 47 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 48 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -35.09 405.32 -9.96 -45.05 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.55 Total: 8.56 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.81 Total: 0.37 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: 0.23 Total: -68.01 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.09 -9.96 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.023 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds