Wall clock time and date at job start Tue Mar 31 2020 18:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47458 * 2 1 4 4 C 1.53004 * 109.46894 * 239.99574 * 2 1 3 5 5 N 1.46503 * 109.46685 * 120.00368 * 2 1 3 6 6 C 1.34583 * 125.75225 * 75.00119 * 5 2 1 7 7 N 1.30871 * 107.62411 * 180.29712 * 6 5 2 8 8 C 1.34553 * 107.26862 * 359.58238 * 7 6 5 9 9 C 1.47873 * 126.04552 * 180.20042 * 8 7 6 10 10 O 1.21554 * 119.99645 * 180.25914 * 9 8 7 11 11 N 1.34778 * 120.00208 * 0.25816 * 9 8 7 12 12 C 1.46491 * 120.00148 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.46979 * 34.99733 * 12 11 9 14 14 C 1.52998 * 109.47029 * 274.99964 * 12 11 9 15 15 C 1.53002 * 109.47103 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47329 * 59.99841 * 15 14 12 17 17 C 1.52998 * 109.47158 * 300.00125 * 16 15 14 18 18 H 1.08997 * 109.47373 * 299.99725 * 17 16 15 19 19 N 1.46501 * 109.47242 * 179.97438 * 17 16 15 20 20 C 1.36942 * 119.99899 * 84.99821 * 19 17 16 21 21 H 1.07996 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38808 * 119.99959 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00019 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00141 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47288 * 59.99911 * 24 22 20 26 26 H 1.48504 * 109.47405 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47405 * 300.00079 * 24 22 20 28 28 C 1.52997 * 109.47133 * 60.00057 * 17 16 15 29 29 N 1.28855 * 125.74491 * 255.03461 * 5 2 1 30 30 H 1.09001 * 109.46914 * 300.00633 * 1 2 3 31 31 H 1.08998 * 109.46694 * 59.99703 * 1 2 3 32 32 H 1.08992 * 109.47381 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46448 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46926 * 299.99717 * 3 2 1 35 35 H 1.08995 * 109.46930 * 59.99965 * 3 2 1 36 36 H 1.08999 * 109.47540 * 300.00482 * 4 2 1 37 37 H 1.08998 * 109.46860 * 60.00824 * 4 2 1 38 38 H 1.09004 * 109.47064 * 180.02562 * 4 2 1 39 39 H 1.08002 * 126.18341 * 0.02562 * 6 5 2 40 40 H 0.97004 * 119.99502 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.47373 * 300.00029 * 14 12 11 42 42 H 1.09000 * 109.47057 * 60.00257 * 14 12 11 43 43 H 1.09003 * 109.47033 * 299.99327 * 15 14 12 44 44 H 1.08999 * 109.46944 * 180.02562 * 15 14 12 45 45 H 1.09004 * 109.47486 * 179.97438 * 16 15 14 46 46 H 1.09008 * 109.47164 * 60.00086 * 16 15 14 47 47 H 0.97004 * 120.00195 * 265.00110 * 19 17 16 48 48 H 0.97002 * 120.00143 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.47278 * 180.02562 * 28 17 16 50 50 H 1.08999 * 109.47686 * 60.00240 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0222 1.3922 7 7 2.5218 -2.2500 2.5766 8 6 2.8482 -1.0574 3.1074 9 6 3.4590 -0.8339 4.4354 10 8 3.7051 0.2965 4.8086 11 7 3.7427 -1.8834 5.2320 12 6 4.3471 -1.6619 6.5479 13 1 3.9561 -0.7391 6.9767 14 6 5.8659 -1.5517 6.3994 15 6 6.4973 -1.3210 7.7738 16 6 6.1588 -2.4952 8.6942 17 6 4.6400 -2.6054 8.8427 18 1 4.2490 -1.6829 9.2719 19 7 4.3158 -3.7302 9.7236 20 6 4.3041 -3.5550 11.0817 21 1 4.5336 -2.5876 11.5034 22 6 3.9964 -4.6206 11.9163 23 7 3.7163 -5.7995 11.4024 24 14 3.9798 -4.3815 13.7689 25 1 2.9774 -3.3455 14.1254 26 1 3.6236 -5.6625 14.4302 27 1 5.3247 -3.9462 14.2239 28 6 4.0086 -2.8362 7.4684 29 7 2.5238 -0.1257 2.2381 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1302 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7218 -1.2490 39 1 1.6520 -2.7675 0.6994 40 1 3.5458 -2.7854 4.9342 41 1 6.2570 -2.4743 5.9706 42 1 6.1071 -0.7153 5.7433 43 1 6.1065 -0.3984 8.2029 44 1 7.5793 -1.2421 7.6679 45 1 6.6090 -2.3311 9.6733 46 1 6.5498 -3.4178 8.2650 47 1 4.1093 -4.5990 9.3449 48 1 3.5008 -6.5441 11.9856 49 1 2.9265 -2.9142 7.5741 50 1 4.3995 -3.7587 7.0391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981338138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:51 Heat of formation + Delta-G solvation = 26.158851 kcal Electronic energy + Delta-G solvation = -28840.392462 eV Core-core repulsion = 24903.198907 eV Total energy + Delta-G solvation = -3937.193556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.54601 -41.04864 -39.28104 -38.20318 -36.28111 -34.92396 -33.61767 -32.93285 -32.13373 -30.66397 -29.42362 -28.45951 -28.40058 -25.96136 -25.58581 -24.02265 -23.25326 -22.62496 -21.48145 -21.09016 -20.84000 -19.32757 -18.69552 -17.62990 -17.51352 -17.49095 -16.61791 -16.13702 -16.03234 -15.61895 -15.41761 -15.15835 -15.07934 -15.02473 -14.91859 -14.70416 -14.23076 -13.80103 -13.60119 -13.41966 -13.29672 -13.23811 -13.02563 -12.89600 -12.78395 -12.76803 -12.39196 -12.28863 -12.19012 -12.04769 -12.00048 -11.96575 -11.68101 -11.65254 -11.48219 -11.42286 -11.39539 -11.13257 -10.85392 -10.60775 -10.12313 -8.98318 -7.91799 -5.19796 0.30500 1.09074 1.15030 1.48055 1.50807 1.56677 1.96665 2.24066 2.58013 3.06467 3.26921 3.41061 3.61675 3.66063 3.75878 3.78701 3.84845 3.87751 4.04142 4.25722 4.31119 4.41444 4.51379 4.56120 4.57959 4.58610 4.61067 4.66449 4.68920 4.76705 4.78095 4.80580 4.92038 5.01170 5.08941 5.10710 5.16449 5.17132 5.21983 5.22810 5.35135 5.36337 5.39688 5.51399 5.54160 5.66138 5.68574 6.30132 6.34456 6.92904 7.10299 7.36691 8.12393 8.36538 9.31391 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.002004 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.819943 B =13969.827182 C =14506.409608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.201 3.799 7 N -0.504 5.504 8 C 0.113 3.887 9 C 0.613 3.387 10 O -0.560 6.560 11 N -0.690 5.690 12 C 0.159 3.841 13 H 0.074 0.926 14 C -0.117 4.117 15 C -0.105 4.105 16 C -0.126 4.126 17 C 0.178 3.822 18 H 0.038 0.962 19 N -0.735 5.735 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.970 3.030 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.279 1.279 28 C -0.114 4.114 29 N -0.272 5.272 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.270 0.730 40 H 0.417 0.583 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.060 0.940 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 10.273 -33.056 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.230 5.230 8 C -0.166 4.166 9 C 0.396 3.604 10 O -0.436 6.436 11 N -0.342 5.342 12 C 0.055 3.945 13 H 0.093 0.907 14 C -0.156 4.156 15 C -0.143 4.143 16 C -0.166 4.166 17 C 0.069 3.931 18 H 0.056 0.944 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.091 0.909 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.800 3.200 25 H -0.206 1.206 26 H -0.222 1.222 27 H -0.205 1.205 28 C -0.153 4.153 29 N -0.112 5.112 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.286 0.714 40 H 0.254 0.746 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.440 11.539 -32.318 34.602 hybrid contribution -0.292 -0.882 1.033 1.390 sum -4.731 10.657 -31.284 33.386 Atomic orbital electron populations 1.22292 0.90193 1.04618 1.04341 1.21674 0.96420 0.94047 0.80231 1.22015 1.01501 0.93053 1.04054 1.22305 1.01973 1.02321 0.94734 1.48212 1.40143 1.06787 1.13157 1.27208 0.99620 0.86959 0.95531 1.71238 1.17682 1.25365 1.08689 1.23479 1.08249 0.86882 0.97987 1.16549 0.77423 0.84642 0.81759 1.90786 1.54701 1.23875 1.74271 1.45706 1.61731 1.09605 1.17110 1.20903 0.93678 0.98788 0.81138 0.90746 1.21827 0.93574 1.02337 0.97812 1.21407 1.00929 0.97942 0.94060 1.22096 0.97692 0.98140 0.98711 1.20297 0.93305 0.90446 0.89042 0.94350 1.42567 1.83289 1.09248 1.02387 1.19560 1.37692 0.95583 0.84080 0.90894 1.25521 1.03479 0.95700 1.02190 1.69805 1.55734 1.01311 1.35100 0.85257 0.77983 0.76238 0.80568 1.20644 1.22169 1.20472 1.21875 1.00859 0.97831 0.94738 1.74217 1.14031 1.26359 0.96612 0.93639 0.86794 0.89974 0.92937 0.87184 0.93109 0.89102 0.86781 0.92334 0.71407 0.74588 0.90709 0.92042 0.92107 0.90328 0.93703 0.92737 0.79439 0.94096 0.92097 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.72 71.98 0.63 -0.09 16 2 C 0.16 1.24 1.23 3.61 0.00 1.25 16 3 C -0.15 -1.52 8.05 71.98 0.58 -0.94 16 4 C -0.16 -0.21 8.28 71.98 0.60 0.39 16 5 N -0.29 -4.71 3.17 -311.56 -0.99 -5.70 16 6 C 0.20 2.90 11.71 180.30 2.11 5.01 16 7 N -0.50 -11.65 11.09 -193.03 -2.14 -13.79 16 8 C 0.11 3.24 7.96 137.13 1.09 4.33 16 9 C 0.61 19.99 7.80 86.79 0.68 20.67 16 10 O -0.56 -21.89 16.75 -3.89 -0.07 -21.95 16 11 N -0.69 -19.77 5.07 -445.38 -2.26 -22.03 16 12 C 0.16 4.85 2.45 44.99 0.11 4.96 16 13 H 0.07 2.54 7.58 -2.38 -0.02 2.52 16 14 C -0.12 -3.26 5.49 30.59 0.17 -3.10 16 15 C -0.10 -3.01 5.92 30.59 0.18 -2.83 16 16 C -0.13 -4.52 5.50 30.59 0.17 -4.35 16 17 C 0.18 7.17 2.77 44.99 0.12 7.29 16 18 H 0.04 1.62 8.08 -2.39 -0.02 1.61 16 19 N -0.74 -37.50 5.12 -322.95 -1.65 -39.16 16 20 C -0.24 -13.38 9.93 84.03 0.83 -12.55 16 21 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 23 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 24 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 28 C -0.11 -3.83 4.86 30.59 0.15 -3.68 16 29 N -0.27 -7.20 11.09 -52.44 -0.58 -7.79 16 30 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.10 16 32 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.05 0.79 8.02 -2.39 -0.02 0.77 16 36 H 0.09 -0.21 7.34 -2.39 -0.02 -0.22 16 37 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16 39 H 0.27 0.71 7.53 -2.91 -0.02 0.69 16 40 H 0.42 10.60 8.31 -92.71 -0.77 9.83 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.37 20.28 7.80 -92.71 -0.72 19.55 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -79.00 405.32 1.96 -77.04 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.55 Total: 31.51 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 7.89 Total: 12.37 kcal Atomic # 7 Polarization: -140.66 SS G_CDS: -7.34 Total: -148.00 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.07 Total: -21.95 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -79.00 1.96 -77.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.197 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds