Wall clock time and date at job start Tue Mar 31 2020 18:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 C 1.53003 * 109.47033 * 239.99908 * 2 1 3 5 5 N 1.46497 * 109.47054 * 120.00340 * 2 1 3 6 6 C 1.34579 * 125.75297 * 74.99725 * 5 2 1 7 7 N 1.30869 * 107.62736 * 180.02562 * 6 5 2 8 8 C 1.34548 * 107.26913 * 0.02562 * 7 6 5 9 9 C 1.47872 * 126.04751 * 180.02562 * 8 7 6 10 10 O 1.21558 * 119.99944 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99997 * 0.02562 * 9 8 7 12 12 C 1.46492 * 119.99920 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47152 * 324.99856 * 12 11 9 14 14 C 1.53006 * 109.47363 * 84.99933 * 12 11 9 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 12 11 16 16 C 1.53002 * 109.46817 * 60.00361 * 15 14 12 17 17 C 1.52996 * 109.46972 * 299.99733 * 16 15 14 18 18 H 1.09000 * 109.47380 * 299.99696 * 17 16 15 19 19 N 1.46510 * 109.46858 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99831 * 85.00321 * 19 17 16 21 21 H 1.07997 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99598 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47046 * 90.00204 * 24 22 20 26 26 H 1.48503 * 109.46982 * 210.00092 * 24 22 20 27 27 H 1.48496 * 109.47515 * 330.00224 * 24 22 20 28 28 C 1.52997 * 109.47131 * 60.00459 * 17 16 15 29 29 N 1.28857 * 125.74427 * 255.31449 * 5 2 1 30 30 H 1.09002 * 109.47222 * 299.99648 * 1 2 3 31 31 H 1.08995 * 109.47346 * 59.99813 * 1 2 3 32 32 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46964 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47198 * 300.00277 * 3 2 1 35 35 H 1.09007 * 109.47153 * 60.00446 * 3 2 1 36 36 H 1.09000 * 109.47205 * 300.00045 * 4 2 1 37 37 H 1.09004 * 109.46646 * 60.00090 * 4 2 1 38 38 H 1.08998 * 109.47071 * 179.97438 * 4 2 1 39 39 H 1.08004 * 126.18621 * 359.97438 * 6 5 2 40 40 H 0.96998 * 119.99903 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46801 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.46998 * 299.99569 * 14 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 15 14 12 44 44 H 1.08996 * 109.46952 * 300.00302 * 15 14 12 45 45 H 1.08996 * 109.47407 * 60.00219 * 16 15 14 46 46 H 1.09000 * 109.46986 * 179.97438 * 16 15 14 47 47 H 0.96992 * 119.99953 * 264.99637 * 19 17 16 48 48 H 0.97001 * 119.99639 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.47153 * 179.97438 * 28 17 16 50 50 H 1.08993 * 109.47194 * 60.00154 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0138 -2.0221 1.3922 7 7 2.5273 -2.2503 2.5742 8 6 2.8481 -1.0574 3.1074 9 6 3.4586 -0.8338 4.4355 10 8 3.7032 0.2967 4.8094 11 7 3.7439 -1.8834 5.2314 12 6 4.3482 -1.6618 6.5473 13 1 5.0298 -0.8128 6.4958 14 6 3.2488 -1.3719 7.5712 15 6 2.2920 -2.5636 7.6435 16 6 3.0659 -3.8139 8.0664 17 6 4.1652 -4.1039 7.0426 18 1 3.7156 -4.2688 6.0635 19 7 4.9058 -5.3015 7.4472 20 6 4.4406 -6.5428 7.1038 21 1 3.5276 -6.6390 6.5350 22 6 5.1427 -7.6774 7.4868 23 7 6.2550 -7.5602 8.1804 24 14 4.5077 -9.3707 7.0189 25 1 5.0748 -9.7663 5.7046 26 1 4.9178 -10.3559 8.0517 27 1 3.0259 -9.3362 6.9284 28 6 5.1220 -2.9121 6.9703 29 7 2.5192 -0.1253 2.2401 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 1.6513 -2.7674 0.6998 40 1 3.5483 -2.7855 4.9332 41 1 3.6985 -1.2075 8.5504 42 1 2.6976 -0.4811 7.2700 43 1 1.5086 -2.3569 8.3726 44 1 1.8424 -2.7284 6.6644 45 1 3.5155 -3.6491 9.0455 46 1 2.3842 -4.6629 8.1183 47 1 5.7257 -5.2151 7.9583 48 1 6.7458 -8.3530 8.4476 49 1 5.9055 -3.1189 6.2412 50 1 5.5717 -2.7473 7.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981338139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:57 Heat of formation + Delta-G solvation = 52.084110 kcal Electronic energy + Delta-G solvation = -29528.962493 eV Core-core repulsion = 25592.893141 eV Total energy + Delta-G solvation = -3936.069352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.65451 -39.89794 -37.98439 -37.48483 -34.42959 -33.20514 -32.55578 -31.24825 -31.04919 -29.50718 -28.12418 -28.00766 -27.79750 -24.87539 -23.63922 -23.21295 -21.99636 -21.12217 -20.71832 -20.35517 -18.69736 -18.09561 -17.10823 -16.77028 -16.72120 -15.82227 -15.33269 -14.89836 -14.85075 -14.69922 -14.39616 -14.26871 -13.94496 -13.56205 -13.38868 -13.30148 -13.02106 -12.97683 -12.89507 -12.40979 -12.38239 -12.28147 -12.01275 -11.89228 -11.80188 -11.66020 -11.53359 -10.94747 -10.84716 -10.68974 -10.55777 -10.49912 -10.31969 -10.14720 -10.11075 -10.06621 -9.68030 -9.67112 -9.45879 -8.87939 -8.77209 -6.91286 -5.72575 -3.00860 1.33105 1.88228 2.01490 3.12673 3.44288 3.46206 3.51408 3.52951 3.80284 4.03867 4.06623 4.16727 4.48908 4.61339 4.69735 4.82064 4.94430 4.99959 5.04848 5.12088 5.13172 5.17194 5.20658 5.26005 5.35018 5.51796 5.55567 5.65467 5.69247 5.76233 5.83382 5.89533 5.95628 6.04770 6.14086 6.18092 6.20119 6.31592 6.35901 6.38224 6.59128 6.64209 6.71059 6.79408 7.02698 7.16206 7.58280 7.74736 7.96470 8.30688 8.46129 9.57304 10.15233 10.49977 11.50190 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.002728 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.107763 B =10263.186752 C =11670.585532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.295 5.295 6 C 0.189 3.811 7 N -0.479 5.479 8 C 0.140 3.860 9 C 0.615 3.385 10 O -0.528 6.528 11 N -0.695 5.695 12 C 0.153 3.847 13 H 0.087 0.913 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.136 4.136 17 C 0.179 3.821 18 H 0.044 0.956 19 N -0.724 5.724 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.133 4.133 29 N -0.249 5.249 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.413 0.587 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.070 0.930 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 17.333 -18.437 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.091 5.091 6 C -0.107 4.107 7 N -0.203 5.203 8 C -0.140 4.140 9 C 0.396 3.604 10 O -0.402 6.402 11 N -0.348 5.348 12 C 0.048 3.952 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.155 4.155 16 C -0.176 4.176 17 C 0.069 3.931 18 H 0.062 0.938 19 N -0.364 5.364 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.172 4.172 29 N -0.088 5.088 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.251 0.749 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.089 0.911 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.256 18.340 -17.916 28.001 hybrid contribution -0.370 -1.677 -0.528 1.797 sum -11.626 16.663 -18.444 27.441 Atomic orbital electron populations 1.22268 0.91748 1.03708 1.04100 1.21153 0.95305 0.94328 0.80723 1.21995 1.02617 0.92265 1.03739 1.22267 1.02780 1.01227 0.95600 1.47791 1.41757 1.06275 1.13314 1.26337 1.01686 0.86382 0.96260 1.71343 1.16121 1.25855 1.07030 1.23828 1.06294 0.85645 0.98190 1.16296 0.78065 0.85108 0.80902 1.90797 1.53156 1.22559 1.73673 1.45932 1.61946 1.09668 1.17277 1.21041 0.94448 0.98929 0.80763 0.89531 1.21912 0.97354 0.98429 0.98931 1.21513 0.97636 0.95344 1.00962 1.22271 0.98925 0.95971 1.00434 1.20166 0.91028 0.86372 0.95523 0.93777 1.42415 1.28038 1.00351 1.65634 1.19240 1.05717 0.83604 1.28058 0.91185 1.24729 0.97528 0.97752 1.01049 1.69660 1.17326 1.28236 1.42998 0.86216 0.78042 0.84597 0.77514 1.21787 1.21887 1.20790 1.22129 0.98731 0.93965 1.02362 1.74271 1.13644 1.25442 0.95412 0.91237 0.89601 0.91266 0.91247 0.90342 0.90527 0.91024 0.89339 0.91081 0.76238 0.74895 0.90932 0.92033 0.92860 0.92526 0.92570 0.92081 0.78285 0.93596 0.91102 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 8.72 37.16 0.32 -0.36 16 2 C 0.17 0.98 1.23 -131.82 -0.16 0.82 16 3 C -0.15 -0.91 8.05 37.16 0.30 -0.61 16 4 C -0.16 -0.56 8.28 37.16 0.31 -0.25 16 5 N -0.29 -2.91 3.16 -49.84 -0.16 -3.07 16 6 C 0.19 1.86 11.71 -90.49 -1.06 0.80 16 7 N -0.48 -6.60 11.09 -12.36 -0.14 -6.74 16 8 C 0.14 2.15 7.96 -156.35 -1.24 0.91 16 9 C 0.61 10.22 7.80 -12.31 -0.10 10.13 16 10 O -0.53 -9.99 16.75 5.32 0.09 -9.90 16 11 N -0.69 -10.73 4.23 -54.74 -0.23 -10.96 16 12 C 0.15 2.30 2.78 -67.93 -0.19 2.11 16 13 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 14 C -0.13 -1.83 5.60 -26.73 -0.15 -1.98 16 15 C -0.12 -1.75 5.77 -26.73 -0.15 -1.90 16 16 C -0.14 -2.43 5.50 -26.73 -0.15 -2.58 16 17 C 0.18 3.48 2.60 -67.93 -0.18 3.31 16 18 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 19 N -0.72 -17.90 5.12 -53.42 -0.27 -18.18 16 20 C -0.23 -6.47 9.93 -15.06 -0.15 -6.62 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 24 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.13 -2.20 5.08 -26.73 -0.14 -2.34 16 29 N -0.25 -3.47 11.09 32.07 0.36 -3.11 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.60 8.02 -51.93 -0.42 0.19 16 36 H 0.07 0.17 7.34 -51.93 -0.38 -0.21 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.22 1.14 7.53 -52.48 -0.40 0.75 16 40 H 0.41 6.47 6.58 -40.82 -0.27 6.20 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 48 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -34.64 400.89 -9.81 -44.45 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.37 Total: 10.63 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.83 Total: 0.90 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: 0.28 Total: -69.56 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.64 -9.81 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.537 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds