Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 C 1.53003 * 109.47033 * 239.99908 * 2 1 3 5 5 N 1.46497 * 109.47054 * 120.00340 * 2 1 3 6 6 C 1.34579 * 125.75297 * 74.99725 * 5 2 1 7 7 N 1.30869 * 107.62736 * 180.02562 * 6 5 2 8 8 C 1.34548 * 107.26913 * 0.02562 * 7 6 5 9 9 C 1.47872 * 126.04751 * 180.02562 * 8 7 6 10 10 O 1.21558 * 119.99944 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99997 * 0.02562 * 9 8 7 12 12 C 1.46492 * 119.99920 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47152 * 324.99856 * 12 11 9 14 14 C 1.53006 * 109.47363 * 84.99933 * 12 11 9 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 12 11 16 16 C 1.53002 * 109.46817 * 60.00361 * 15 14 12 17 17 C 1.52996 * 109.46972 * 299.99733 * 16 15 14 18 18 H 1.09000 * 109.47380 * 299.99696 * 17 16 15 19 19 N 1.46510 * 109.46858 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99831 * 85.00321 * 19 17 16 21 21 H 1.07997 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99598 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47046 * 90.00204 * 24 22 20 26 26 H 1.48503 * 109.46982 * 210.00092 * 24 22 20 27 27 H 1.48496 * 109.47515 * 330.00224 * 24 22 20 28 28 C 1.52997 * 109.47131 * 60.00459 * 17 16 15 29 29 N 1.28857 * 125.74427 * 255.31449 * 5 2 1 30 30 H 1.09002 * 109.47222 * 299.99648 * 1 2 3 31 31 H 1.08995 * 109.47346 * 59.99813 * 1 2 3 32 32 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46964 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47198 * 300.00277 * 3 2 1 35 35 H 1.09007 * 109.47153 * 60.00446 * 3 2 1 36 36 H 1.09000 * 109.47205 * 300.00045 * 4 2 1 37 37 H 1.09004 * 109.46646 * 60.00090 * 4 2 1 38 38 H 1.08998 * 109.47071 * 179.97438 * 4 2 1 39 39 H 1.08004 * 126.18621 * 359.97438 * 6 5 2 40 40 H 0.96998 * 119.99903 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46801 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.46998 * 299.99569 * 14 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 15 14 12 44 44 H 1.08996 * 109.46952 * 300.00302 * 15 14 12 45 45 H 1.08996 * 109.47407 * 60.00219 * 16 15 14 46 46 H 1.09000 * 109.46986 * 179.97438 * 16 15 14 47 47 H 0.96992 * 119.99953 * 264.99637 * 19 17 16 48 48 H 0.97001 * 119.99639 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.47153 * 179.97438 * 28 17 16 50 50 H 1.08993 * 109.47194 * 60.00154 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0138 -2.0221 1.3922 7 7 2.5273 -2.2503 2.5742 8 6 2.8481 -1.0574 3.1074 9 6 3.4586 -0.8338 4.4355 10 8 3.7032 0.2967 4.8094 11 7 3.7439 -1.8834 5.2314 12 6 4.3482 -1.6618 6.5473 13 1 5.0298 -0.8128 6.4958 14 6 3.2488 -1.3719 7.5712 15 6 2.2920 -2.5636 7.6435 16 6 3.0659 -3.8139 8.0664 17 6 4.1652 -4.1039 7.0426 18 1 3.7156 -4.2688 6.0635 19 7 4.9058 -5.3015 7.4472 20 6 4.4406 -6.5428 7.1038 21 1 3.5276 -6.6390 6.5350 22 6 5.1427 -7.6774 7.4868 23 7 6.2550 -7.5602 8.1804 24 14 4.5077 -9.3707 7.0189 25 1 5.0748 -9.7663 5.7046 26 1 4.9178 -10.3559 8.0517 27 1 3.0259 -9.3362 6.9284 28 6 5.1220 -2.9121 6.9703 29 7 2.5192 -0.1253 2.2401 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 1.6513 -2.7674 0.6998 40 1 3.5483 -2.7855 4.9332 41 1 3.6985 -1.2075 8.5504 42 1 2.6976 -0.4811 7.2700 43 1 1.5086 -2.3569 8.3726 44 1 1.8424 -2.7284 6.6644 45 1 3.5155 -3.6491 9.0455 46 1 2.3842 -4.6629 8.1183 47 1 5.7257 -5.2151 7.9583 48 1 6.7458 -8.3530 8.4476 49 1 5.9055 -3.1189 6.2412 50 1 5.5717 -2.7473 7.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981338139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = 30.253837 kcal Electronic energy + Delta-G solvation = -29529.909124 eV Core-core repulsion = 25592.893141 eV Total energy + Delta-G solvation = -3937.015984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.53951 -41.20191 -39.23929 -38.19801 -36.16313 -34.58905 -33.57718 -32.91246 -32.12183 -30.82725 -29.50409 -28.46467 -28.40471 -25.96857 -25.56978 -24.02581 -23.32398 -22.54769 -21.94965 -21.10094 -20.09713 -19.31158 -18.82067 -17.64019 -17.57350 -17.01927 -16.81657 -16.28023 -15.89852 -15.87108 -15.41551 -15.11594 -15.11256 -14.94110 -14.86133 -14.70489 -13.90405 -13.79370 -13.53731 -13.29633 -13.24673 -13.14992 -13.04025 -13.00838 -12.85973 -12.79451 -12.77071 -12.39174 -12.21141 -12.04470 -12.00186 -11.94190 -11.60520 -11.48934 -11.46774 -11.41863 -11.36468 -11.00660 -10.82632 -10.59168 -10.07910 -8.95987 -7.90072 -5.17763 0.31328 1.09566 1.16698 1.49357 1.50673 1.58938 2.02839 2.26150 2.59237 3.09439 3.27303 3.43100 3.64681 3.66181 3.76482 3.79576 3.87456 3.88655 3.92332 4.29954 4.30908 4.35902 4.55363 4.57377 4.58742 4.60785 4.66404 4.68636 4.72299 4.77579 4.80097 4.81594 4.91568 4.94684 5.08751 5.10107 5.17030 5.17993 5.21495 5.23783 5.35903 5.38215 5.43578 5.53021 5.56865 5.65149 5.69046 6.32014 6.35169 6.92445 7.11837 7.38510 8.14649 8.38069 9.33451 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.002728 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.107763 B =10263.186752 C =11670.585532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.148 4.148 4 C -0.157 4.157 5 N -0.285 5.285 6 C 0.199 3.801 7 N -0.508 5.508 8 C 0.111 3.889 9 C 0.614 3.386 10 O -0.559 6.559 11 N -0.690 5.690 12 C 0.158 3.842 13 H 0.089 0.911 14 C -0.121 4.121 15 C -0.105 4.105 16 C -0.125 4.125 17 C 0.177 3.823 18 H 0.040 0.960 19 N -0.736 5.736 20 C -0.232 4.232 21 H 0.074 0.926 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.270 1.270 28 C -0.120 4.120 29 N -0.268 5.268 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.267 0.733 40 H 0.412 0.588 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.373 0.627 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 17.535 -20.728 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.205 4.205 4 C -0.215 4.215 5 N -0.082 5.082 6 C -0.095 4.095 7 N -0.234 5.234 8 C -0.167 4.167 9 C 0.397 3.603 10 O -0.435 6.435 11 N -0.342 5.342 12 C 0.053 3.947 13 H 0.107 0.893 14 C -0.160 4.160 15 C -0.144 4.144 16 C -0.166 4.166 17 C 0.068 3.932 18 H 0.058 0.942 19 N -0.375 5.375 20 C -0.364 4.364 21 H 0.092 0.908 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.798 3.202 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.195 1.195 28 C -0.159 4.159 29 N -0.109 5.109 30 H 0.066 0.934 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.283 0.717 40 H 0.250 0.750 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.205 0.795 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.312 18.571 -20.242 30.526 hybrid contribution 0.190 -1.644 0.049 1.656 sum -13.122 16.927 -20.193 29.436 Atomic orbital electron populations 1.22287 0.90073 1.04563 1.04444 1.21676 0.96519 0.94084 0.80124 1.22013 1.01450 0.92907 1.04172 1.22311 1.01915 1.02291 0.94934 1.48220 1.40226 1.06653 1.13117 1.27160 0.99733 0.87043 0.95581 1.71279 1.17543 1.25685 1.08894 1.23569 1.08251 0.86681 0.98248 1.16502 0.77588 0.84688 0.81498 1.90761 1.54662 1.23545 1.74577 1.45894 1.61600 1.09425 1.17291 1.21004 0.94746 0.97960 0.80962 0.89274 1.21872 0.96815 0.97926 0.99357 1.21409 0.97765 0.93988 1.01200 1.22085 0.98058 0.96710 0.99714 1.20349 0.91648 0.85650 0.95508 0.94238 1.42604 1.28117 1.01214 1.65569 1.19588 1.05317 0.84813 1.26720 0.90801 1.25505 0.98129 1.01339 1.01969 1.69813 1.18763 1.28698 1.44854 0.85204 0.78031 0.80131 0.76826 1.21512 1.22468 1.19479 1.21973 0.97953 0.93350 1.02638 1.74198 1.14097 1.26154 0.96426 0.93397 0.86734 0.90156 0.93047 0.87110 0.92870 0.89321 0.86661 0.92484 0.71704 0.75007 0.89358 0.91966 0.91051 0.92852 0.92778 0.94037 0.79538 0.94205 0.92014 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.72 71.98 0.63 -0.27 16 2 C 0.16 1.50 1.23 3.60 0.00 1.50 16 3 C -0.15 -1.66 8.05 71.98 0.58 -1.08 16 4 C -0.16 -0.57 8.28 71.98 0.60 0.03 16 5 N -0.29 -5.30 3.16 -311.60 -0.99 -6.29 16 6 C 0.20 3.54 11.71 180.30 2.11 5.65 16 7 N -0.51 -13.75 11.09 -193.03 -2.14 -15.89 16 8 C 0.11 3.45 7.96 137.13 1.09 4.55 16 9 C 0.61 20.84 7.80 86.79 0.68 21.52 16 10 O -0.56 -21.64 16.75 -3.90 -0.07 -21.70 16 11 N -0.69 -21.44 4.23 -445.37 -1.88 -23.32 16 12 C 0.16 4.67 2.78 44.99 0.13 4.80 16 13 H 0.09 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.12 -3.31 5.60 30.60 0.17 -3.13 16 15 C -0.11 -3.02 5.77 30.59 0.18 -2.85 16 16 C -0.13 -4.43 5.50 30.59 0.17 -4.26 16 17 C 0.18 6.87 2.60 44.99 0.12 6.99 16 18 H 0.04 1.58 6.44 -2.39 -0.02 1.57 16 19 N -0.74 -36.80 5.12 -322.93 -1.65 -38.45 16 20 C -0.23 -12.87 9.93 84.03 0.83 -12.03 16 21 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 24 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C -0.12 -3.97 5.08 30.59 0.16 -3.81 16 29 N -0.27 -7.53 11.09 -52.44 -0.58 -8.12 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.85 8.02 -2.38 -0.02 0.83 16 36 H 0.09 0.04 7.34 -2.39 -0.02 0.03 16 37 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.27 1.74 7.53 -2.91 -0.02 1.72 16 40 H 0.41 13.04 6.58 -92.71 -0.61 12.43 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.58 7.60 -2.39 -0.02 1.56 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.37 20.04 7.80 -92.71 -0.72 19.32 16 48 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 49 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 50 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -77.33 400.89 2.51 -74.82 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.39 Total: 36.29 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 7.90 Total: 13.61 kcal Atomic # 7 Polarization: -144.46 SS G_CDS: -6.96 Total: -151.43 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.07 Total: -21.70 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.33 2.51 -74.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.069 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds