Wall clock time and date at job start Tue Mar 31 2020 18:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 C 1.53000 * 109.47125 * 240.00062 * 2 1 3 5 5 N 1.46505 * 109.46961 * 120.00233 * 2 1 3 6 6 C 1.34580 * 125.74728 * 74.99833 * 5 2 1 7 7 N 1.30876 * 107.62258 * 179.77161 * 6 5 2 8 8 C 1.34552 * 107.26853 * 0.39276 * 7 6 5 9 9 C 1.47870 * 126.04927 * 179.87076 * 8 7 6 10 10 O 1.21554 * 120.00383 * 179.68640 * 9 8 7 11 11 N 1.34781 * 119.99895 * 359.68834 * 9 8 7 12 12 C 1.46499 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47397 * 34.99792 * 12 11 9 14 14 C 1.53000 * 109.46840 * 274.99457 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.46832 * 299.99302 * 17 16 15 20 20 C 1.36939 * 120.00484 * 275.00002 * 19 17 16 21 21 H 1.08005 * 119.99602 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00359 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47030 * 120.00412 * 24 22 20 27 27 H 1.48496 * 109.47318 * 240.00302 * 24 22 20 28 28 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 29 29 N 1.28852 * 125.74737 * 255.02112 * 5 2 1 30 30 H 1.09001 * 109.46648 * 299.99919 * 1 2 3 31 31 H 1.08995 * 109.46873 * 59.99655 * 1 2 3 32 32 H 1.08993 * 109.47175 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46494 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47173 * 299.99545 * 3 2 1 35 35 H 1.09001 * 109.47281 * 60.00468 * 3 2 1 36 36 H 1.09004 * 109.47167 * 300.00184 * 4 2 1 37 37 H 1.09001 * 109.47001 * 59.99936 * 4 2 1 38 38 H 1.08994 * 109.46989 * 180.02562 * 4 2 1 39 39 H 1.07994 * 126.19112 * 0.04239 * 6 5 2 40 40 H 0.97002 * 119.99716 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 42 42 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 43 43 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 44 44 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 45 45 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 47 47 H 0.97001 * 119.99753 * 94.99745 * 19 17 16 48 48 H 0.97000 * 120.00591 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.47194 * 179.97438 * 28 17 16 50 50 H 1.09002 * 109.46695 * 59.99734 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0221 1.3922 7 7 2.5323 -2.2507 2.5719 8 6 2.8487 -1.0575 3.1072 9 6 3.4595 -0.8338 4.4352 10 8 3.7055 0.2965 4.8085 11 7 3.7434 -1.8834 5.2317 12 6 4.3480 -1.6618 6.5476 13 1 3.9569 -0.7393 6.9764 14 6 5.8667 -1.5515 6.3989 15 6 6.4982 -1.3207 7.7732 16 6 6.1599 -2.4950 8.6937 17 6 4.6411 -2.6055 8.8423 18 1 4.4001 -3.4425 9.4977 19 7 4.1155 -1.3658 9.4193 20 6 4.1041 -1.1937 10.7777 21 1 4.4830 -1.9718 11.4238 22 6 3.6066 -0.0188 11.3244 23 7 3.1453 0.9297 10.5371 24 14 3.5917 0.2162 13.1775 25 1 4.1614 -0.9879 13.8338 26 1 4.4075 1.4054 13.5322 27 1 2.1951 0.4183 13.6397 28 6 4.0096 -2.8363 7.4679 29 7 2.5241 -0.1257 2.2379 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 1.6523 -2.7675 0.6994 40 1 3.5468 -2.7854 4.9339 41 1 6.2579 -2.4741 5.9700 42 1 6.1078 -0.7150 5.7429 43 1 7.5802 -1.2416 7.6674 44 1 6.1071 -0.3982 8.2026 45 1 6.6094 -2.3304 9.6730 46 1 6.5510 -3.4175 8.2644 47 1 3.7756 -0.6667 8.8390 48 1 2.7972 1.7506 10.9190 49 1 2.9277 -2.9154 7.5739 50 1 4.4008 -3.7587 7.0387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981338140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:01 Heat of formation + Delta-G solvation = 53.823779 kcal Electronic energy + Delta-G solvation = -29413.714724 eV Core-core repulsion = 25477.720810 eV Total energy + Delta-G solvation = -3935.993914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.64783 -39.64347 -37.98765 -37.48689 -34.40904 -33.10302 -32.61482 -31.20823 -30.83521 -29.16177 -28.12463 -28.01067 -27.89270 -24.78433 -23.55245 -23.20171 -21.80879 -21.59807 -20.37911 -20.22813 -18.71028 -17.73000 -17.17491 -16.74391 -16.66231 -15.92738 -15.15438 -14.87364 -14.71040 -14.53442 -14.38674 -14.19210 -13.71444 -13.50591 -13.48813 -13.30500 -13.02823 -12.98739 -12.85513 -12.38904 -12.29486 -12.22915 -11.94636 -11.86965 -11.68018 -11.52149 -11.29732 -10.83378 -10.75631 -10.64951 -10.55738 -10.52405 -10.20123 -10.09862 -9.98334 -9.94955 -9.65675 -9.52192 -9.41705 -8.82977 -8.64123 -6.85004 -5.65620 -2.94688 1.37436 1.89719 2.02399 3.17677 3.49805 3.52903 3.54956 3.57577 3.81074 4.02032 4.07544 4.18175 4.49061 4.67635 4.72045 4.81377 4.95210 5.00745 5.08247 5.15067 5.23550 5.24100 5.32748 5.34668 5.54058 5.59190 5.68979 5.74794 5.80834 5.83083 5.90693 5.95280 6.00644 6.18534 6.18875 6.22067 6.29619 6.35434 6.47263 6.54577 6.71394 6.79018 6.89767 6.94883 7.11537 7.20533 7.64391 7.80027 7.99250 8.42585 8.52181 9.63165 10.21598 10.55778 11.56605 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002400 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.082441 B =11661.723845 C =12423.335221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.150 4.150 4 C -0.159 4.159 5 N -0.294 5.294 6 C 0.186 3.814 7 N -0.484 5.484 8 C 0.144 3.856 9 C 0.610 3.390 10 O -0.511 6.511 11 N -0.703 5.703 12 C 0.147 3.853 13 H 0.101 0.899 14 C -0.121 4.121 15 C -0.109 4.109 16 C -0.135 4.135 17 C 0.179 3.821 18 H 0.052 0.948 19 N -0.722 5.722 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.293 1.293 28 C -0.127 4.127 29 N -0.247 5.247 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.220 0.780 40 H 0.404 0.596 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.068 0.932 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -7.470 -27.910 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.091 5.091 6 C -0.110 4.110 7 N -0.210 5.210 8 C -0.136 4.136 9 C 0.391 3.609 10 O -0.383 6.383 11 N -0.355 5.355 12 C 0.044 3.956 13 H 0.119 0.881 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.176 4.176 17 C 0.069 3.931 18 H 0.070 0.930 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.166 4.166 29 N -0.085 5.085 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.236 0.764 40 H 0.239 0.761 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.603 -6.266 -27.141 27.976 hybrid contribution -0.421 -0.192 0.297 0.550 sum -3.023 -6.459 -26.844 27.775 Atomic orbital electron populations 1.22270 0.91712 1.03625 1.04238 1.21161 0.95340 0.94401 0.80626 1.22005 1.02621 0.92212 1.03881 1.22258 1.02698 1.01109 0.95693 1.47783 1.41585 1.06234 1.13486 1.26272 1.01853 0.86487 0.96373 1.71272 1.16577 1.26072 1.07068 1.23918 1.06052 0.85500 0.98139 1.16322 0.78281 0.85304 0.81020 1.90878 1.52181 1.22404 1.72803 1.45861 1.62640 1.08998 1.17972 1.21138 0.92887 1.01140 0.80433 0.88132 1.21859 0.94688 1.01066 0.98348 1.21356 0.98584 1.00845 0.93947 1.22180 0.99595 0.96500 0.99282 1.20163 0.91044 0.91038 0.90891 0.93049 1.42526 1.73749 1.15726 1.04428 1.19268 1.34007 1.00306 0.83238 0.91178 1.24737 1.01939 0.96884 0.97447 1.69682 1.47413 1.07478 1.33207 0.86167 0.77078 0.77428 0.85812 1.20658 1.22012 1.22046 1.22077 1.01597 0.96493 0.96446 1.74324 1.13390 1.25420 0.95358 0.91108 0.89582 0.91352 0.91239 0.90321 0.90372 0.91151 0.89324 0.91143 0.76368 0.76076 0.92641 0.92257 0.93275 0.90296 0.92012 0.93842 0.78012 0.93600 0.91281 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 8.72 37.16 0.32 -0.41 16 2 C 0.17 1.02 1.23 -131.81 -0.16 0.85 16 3 C -0.15 -1.01 8.04 37.16 0.30 -0.72 16 4 C -0.16 -0.51 8.28 37.16 0.31 -0.21 16 5 N -0.29 -2.95 3.17 -49.83 -0.16 -3.11 16 6 C 0.19 1.70 11.71 -90.48 -1.06 0.64 16 7 N -0.48 -6.25 11.09 -12.37 -0.14 -6.38 16 8 C 0.14 2.27 7.96 -156.36 -1.24 1.02 16 9 C 0.61 11.08 7.80 -12.32 -0.10 10.98 16 10 O -0.51 -11.30 16.75 5.32 0.09 -11.21 16 11 N -0.70 -11.21 5.07 -54.74 -0.28 -11.49 16 12 C 0.15 2.61 2.28 -67.93 -0.16 2.45 16 13 H 0.10 2.22 5.94 -51.93 -0.31 1.91 16 14 C -0.12 -2.03 5.49 -26.73 -0.15 -2.18 16 15 C -0.11 -1.98 5.77 -26.73 -0.15 -2.13 16 16 C -0.14 -2.44 5.61 -26.73 -0.15 -2.59 16 17 C 0.18 3.55 3.10 -67.93 -0.21 3.34 16 18 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 19 N -0.72 -18.12 4.28 -53.43 -0.23 -18.35 16 20 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.94 13.06 55.49 0.72 -28.21 16 24 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 C -0.13 -2.13 5.07 -26.73 -0.14 -2.26 16 29 N -0.25 -3.62 11.09 32.07 0.36 -3.27 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 36 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.22 0.90 7.52 -52.49 -0.39 0.51 16 40 H 0.40 5.47 8.31 -40.82 -0.34 5.13 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.72 7.60 -51.93 -0.39 1.32 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.38 10.48 6.06 -40.82 -0.25 10.24 16 48 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -35.92 400.89 -9.81 -45.73 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.37 Total: 10.84 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.83 Total: 1.52 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: 0.28 Total: -70.81 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.92 -9.81 -45.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.557 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds