Wall clock time and date at job start Tue Mar 31 2020 18:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 C 1.53000 * 109.47125 * 240.00062 * 2 1 3 5 5 N 1.46505 * 109.46961 * 120.00233 * 2 1 3 6 6 C 1.34580 * 125.74728 * 74.99833 * 5 2 1 7 7 N 1.30876 * 107.62258 * 179.77161 * 6 5 2 8 8 C 1.34552 * 107.26853 * 0.39276 * 7 6 5 9 9 C 1.47870 * 126.04927 * 179.87076 * 8 7 6 10 10 O 1.21554 * 120.00383 * 179.68640 * 9 8 7 11 11 N 1.34781 * 119.99895 * 359.68834 * 9 8 7 12 12 C 1.46499 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47397 * 34.99792 * 12 11 9 14 14 C 1.53000 * 109.46840 * 274.99457 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.46832 * 299.99302 * 17 16 15 20 20 C 1.36939 * 120.00484 * 275.00002 * 19 17 16 21 21 H 1.08005 * 119.99602 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00359 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47030 * 120.00412 * 24 22 20 27 27 H 1.48496 * 109.47318 * 240.00302 * 24 22 20 28 28 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 29 29 N 1.28852 * 125.74737 * 255.02112 * 5 2 1 30 30 H 1.09001 * 109.46648 * 299.99919 * 1 2 3 31 31 H 1.08995 * 109.46873 * 59.99655 * 1 2 3 32 32 H 1.08993 * 109.47175 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46494 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47173 * 299.99545 * 3 2 1 35 35 H 1.09001 * 109.47281 * 60.00468 * 3 2 1 36 36 H 1.09004 * 109.47167 * 300.00184 * 4 2 1 37 37 H 1.09001 * 109.47001 * 59.99936 * 4 2 1 38 38 H 1.08994 * 109.46989 * 180.02562 * 4 2 1 39 39 H 1.07994 * 126.19112 * 0.04239 * 6 5 2 40 40 H 0.97002 * 119.99716 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 42 42 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 43 43 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 44 44 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 45 45 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 47 47 H 0.97001 * 119.99753 * 94.99745 * 19 17 16 48 48 H 0.97000 * 120.00591 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.47194 * 179.97438 * 28 17 16 50 50 H 1.09002 * 109.46695 * 59.99734 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0221 1.3922 7 7 2.5323 -2.2507 2.5719 8 6 2.8487 -1.0575 3.1072 9 6 3.4595 -0.8338 4.4352 10 8 3.7055 0.2965 4.8085 11 7 3.7434 -1.8834 5.2317 12 6 4.3480 -1.6618 6.5476 13 1 3.9569 -0.7393 6.9764 14 6 5.8667 -1.5515 6.3989 15 6 6.4982 -1.3207 7.7732 16 6 6.1599 -2.4950 8.6937 17 6 4.6411 -2.6055 8.8423 18 1 4.4001 -3.4425 9.4977 19 7 4.1155 -1.3658 9.4193 20 6 4.1041 -1.1937 10.7777 21 1 4.4830 -1.9718 11.4238 22 6 3.6066 -0.0188 11.3244 23 7 3.1453 0.9297 10.5371 24 14 3.5917 0.2162 13.1775 25 1 4.1614 -0.9879 13.8338 26 1 4.4075 1.4054 13.5322 27 1 2.1951 0.4183 13.6397 28 6 4.0096 -2.8363 7.4679 29 7 2.5241 -0.1257 2.2379 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 1.6523 -2.7675 0.6994 40 1 3.5468 -2.7854 4.9339 41 1 6.2579 -2.4741 5.9700 42 1 6.1078 -0.7150 5.7429 43 1 7.5802 -1.2416 7.6674 44 1 6.1071 -0.3982 8.2026 45 1 6.6094 -2.3304 9.6730 46 1 6.5510 -3.4175 8.2644 47 1 3.7756 -0.6667 8.8390 48 1 2.7972 1.7506 10.9190 49 1 2.9277 -2.9154 7.5739 50 1 4.4008 -3.7587 7.0387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981338140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:00 Heat of formation + Delta-G solvation = 29.355261 kcal Electronic energy + Delta-G solvation = -29414.775758 eV Core-core repulsion = 25477.720810 eV Total energy + Delta-G solvation = -3937.054949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.54551 -41.07874 -39.38517 -38.20605 -36.07814 -34.79533 -33.61064 -32.71177 -32.12645 -30.62255 -29.66455 -28.47008 -28.39903 -25.95666 -25.58398 -24.00935 -23.30147 -22.95752 -21.58791 -21.09828 -20.16768 -19.22146 -18.81860 -17.62612 -17.51852 -17.35714 -16.52862 -16.28893 -16.03511 -15.61981 -15.31656 -15.28685 -15.18762 -15.03353 -14.95660 -14.65388 -13.82072 -13.79290 -13.43500 -13.41544 -13.30156 -13.24293 -13.02190 -12.87709 -12.85286 -12.77336 -12.57529 -12.39463 -12.19671 -12.09473 -12.00448 -11.78869 -11.67264 -11.57068 -11.48027 -11.42456 -11.26512 -11.01250 -10.83184 -10.60583 -10.07724 -8.94068 -7.88618 -5.16667 0.31607 1.10561 1.15794 1.46520 1.47883 1.57721 1.99415 2.24953 2.59060 3.06486 3.27466 3.44648 3.65736 3.72520 3.77033 3.80011 3.87558 3.92966 4.08689 4.18558 4.36514 4.45395 4.53254 4.57100 4.57828 4.60598 4.68361 4.69727 4.76432 4.77981 4.80139 4.81771 4.91166 5.02422 5.10134 5.10989 5.15685 5.18184 5.22107 5.31403 5.36186 5.40750 5.44167 5.54272 5.62807 5.68939 5.70267 6.32898 6.37889 6.97767 7.13190 7.38059 8.17640 8.38306 9.35254 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002400 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.082441 B =11661.723845 C =12423.335221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.150 4.150 4 C -0.154 4.154 5 N -0.287 5.287 6 C 0.202 3.798 7 N -0.499 5.499 8 C 0.116 3.884 9 C 0.605 3.395 10 O -0.567 6.567 11 N -0.686 5.686 12 C 0.153 3.847 13 H 0.047 0.953 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.126 4.126 17 C 0.168 3.832 18 H 0.058 0.942 19 N -0.735 5.735 20 C -0.227 4.227 21 H 0.081 0.919 22 C -0.085 4.085 23 N -0.975 5.975 24 Si 0.970 3.030 25 H -0.261 1.261 26 H -0.299 1.299 27 H -0.297 1.297 28 C -0.114 4.114 29 N -0.277 5.277 30 H 0.041 0.959 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.275 0.725 40 H 0.420 0.580 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.369 0.631 48 H 0.246 0.754 49 H 0.059 0.941 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -11.158 -30.647 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.208 4.208 4 C -0.212 4.212 5 N -0.084 5.084 6 C -0.092 4.092 7 N -0.225 5.225 8 C -0.163 4.163 9 C 0.388 3.612 10 O -0.443 6.443 11 N -0.337 5.337 12 C 0.049 3.951 13 H 0.065 0.935 14 C -0.149 4.149 15 C -0.143 4.143 16 C -0.166 4.166 17 C 0.060 3.940 18 H 0.076 0.924 19 N -0.376 5.376 20 C -0.359 4.359 21 H 0.099 0.901 22 C -0.276 4.276 23 N -0.626 5.626 24 Si 0.800 3.200 25 H -0.185 1.185 26 H -0.227 1.227 27 H -0.225 1.225 28 C -0.153 4.153 29 N -0.118 5.118 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.290 0.710 40 H 0.258 0.742 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.618 -10.057 -29.902 31.657 hybrid contribution -0.439 0.913 0.969 1.402 sum -3.057 -9.144 -28.934 30.498 Atomic orbital electron populations 1.22295 0.90170 1.04734 1.04236 1.21680 0.96452 0.93919 0.80345 1.22024 1.01466 0.93352 1.03925 1.22299 1.01954 1.02392 0.94520 1.48204 1.40151 1.06922 1.13102 1.27270 0.99386 0.86864 0.95675 1.71203 1.17660 1.24932 1.08682 1.23387 1.08218 0.87031 0.97645 1.16732 0.77613 0.84761 0.82075 1.90839 1.54615 1.24498 1.74329 1.45632 1.61782 1.09380 1.16933 1.20891 0.93538 0.99428 0.81229 0.93502 1.21763 0.93712 1.02105 0.97293 1.21287 0.99738 0.98830 0.94488 1.22059 0.97732 0.98143 0.98618 1.20505 0.92391 0.88753 0.92394 0.92382 1.42778 1.73997 1.17270 1.03543 1.19714 1.31557 0.99927 0.84751 0.90145 1.25568 1.03100 0.97109 1.01827 1.69877 1.49752 1.07990 1.35019 0.85099 0.76537 0.77552 0.80779 1.18543 1.22693 1.22497 1.21966 1.01082 0.97696 0.94540 1.74249 1.14208 1.26614 0.96708 0.93951 0.86745 0.89665 0.93027 0.87075 0.93498 0.88800 0.86760 0.92356 0.70962 0.74246 0.88895 0.94061 0.91122 0.95256 0.93782 0.89424 0.79801 0.94486 0.92183 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.72 71.98 0.63 -0.41 16 2 C 0.16 1.59 1.23 3.60 0.00 1.59 16 3 C -0.15 -2.01 8.04 71.98 0.58 -1.43 16 4 C -0.15 -0.40 8.28 71.98 0.60 0.20 16 5 N -0.29 -5.42 3.17 -311.57 -0.99 -6.41 16 6 C 0.20 3.15 11.71 180.30 2.11 5.26 16 7 N -0.50 -12.18 11.09 -193.04 -2.14 -14.32 16 8 C 0.12 3.75 7.96 137.13 1.09 4.84 16 9 C 0.61 23.25 7.80 86.79 0.68 23.93 16 10 O -0.57 -27.37 16.75 -3.89 -0.07 -27.44 16 11 N -0.69 -22.13 5.07 -445.38 -2.26 -24.39 16 12 C 0.15 5.55 2.28 44.99 0.10 5.65 16 13 H 0.05 2.25 5.94 -2.39 -0.01 2.23 16 14 C -0.11 -3.65 5.49 30.59 0.17 -3.48 16 15 C -0.11 -3.80 5.77 30.59 0.18 -3.63 16 16 C -0.13 -4.30 5.61 30.60 0.17 -4.13 16 17 C 0.17 6.51 3.10 44.99 0.14 6.65 16 18 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 19 N -0.74 -38.11 4.28 -322.94 -1.38 -39.49 16 20 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 23 N -0.97 -63.88 13.06 21.65 0.28 -63.60 16 24 Si 0.97 48.38 29.55 68.60 2.03 50.41 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 27 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 28 C -0.11 -3.66 5.07 30.59 0.16 -3.51 16 29 N -0.28 -8.45 11.09 -52.44 -0.58 -9.03 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.92 8.02 -2.39 -0.02 0.90 16 36 H 0.09 -0.16 7.34 -2.38 -0.02 -0.18 16 37 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.28 0.75 7.52 -2.91 -0.02 0.73 16 40 H 0.42 10.83 8.31 -92.71 -0.77 10.06 16 41 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.03 1.34 7.60 -2.39 -0.02 1.32 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.37 21.45 6.06 -92.71 -0.56 20.89 16 48 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 49 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -87.27 400.89 2.41 -84.86 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.39 Total: 34.60 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 7.90 Total: 14.82 kcal Atomic # 7 Polarization: -150.18 SS G_CDS: -7.07 Total: -157.25 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.07 Total: -27.44 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -87.27 2.41 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.218 kcal (2) G-P(sol) polarization free energy of solvation -87.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds