Wall clock time and date at job start Tue Mar 31 2020 18:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00190 * 2 1 4 4 O 1.21597 * 119.99713 * 185.05017 * 3 2 1 5 5 C 1.47517 * 120.00108 * 5.04825 * 3 2 1 6 6 C 1.36595 * 125.77251 * 184.93834 * 5 3 2 7 7 N 1.34816 * 106.84208 * 179.97438 * 6 5 3 8 8 C 1.46492 * 126.59732 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47127 * 75.00469 * 8 7 6 10 10 C 1.53002 * 109.47543 * 195.00477 * 8 7 6 11 11 C 1.53007 * 109.47225 * 315.00409 * 8 7 6 12 12 N 1.40213 * 106.81106 * 0.02562 * 7 6 5 13 13 N 1.28763 * 108.36463 * 359.74390 * 12 7 6 14 14 C 1.46502 * 119.99695 * 180.27376 * 2 1 3 15 15 C 1.53044 * 109.45849 * 60.02955 * 14 2 1 16 16 C 1.53190 * 109.30956 * 178.59912 * 15 14 2 17 17 N 1.46928 * 108.76766 * 54.65724 * 16 15 14 18 18 C 1.36932 * 120.63213 * 126.40222 * 17 16 15 19 19 H 1.07996 * 120.00374 * 329.98993 * 18 17 16 20 20 C 1.38815 * 119.99781 * 149.98540 * 18 17 16 21 21 N 1.31622 * 120.00020 * 167.25507 * 20 18 17 22 22 Si 1.86805 * 120.00225 * 347.25150 * 20 18 17 23 23 H 1.48496 * 109.46682 * 93.01395 * 22 20 18 24 24 H 1.48498 * 109.46893 * 213.01216 * 22 20 18 25 25 H 1.48500 * 109.46810 * 333.01632 * 22 20 18 26 26 C 1.46925 * 118.73522 * 306.37834 * 17 16 15 27 27 C 1.53032 * 109.46228 * 299.97264 * 14 2 1 28 28 H 1.09000 * 109.47080 * 275.51080 * 1 2 3 29 29 H 1.08999 * 109.46887 * 35.50629 * 1 2 3 30 30 H 1.08999 * 109.47431 * 155.50181 * 1 2 3 31 31 H 1.08003 * 126.58013 * 359.97438 * 6 5 3 32 32 H 1.08997 * 109.47005 * 60.00106 * 9 8 7 33 33 H 1.08997 * 109.47134 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.46864 * 300.00206 * 9 8 7 35 35 H 1.09002 * 109.46865 * 60.00124 * 10 8 7 36 36 H 1.08997 * 109.47213 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47051 * 300.00176 * 10 8 7 38 38 H 1.09001 * 109.47053 * 60.00191 * 11 8 7 39 39 H 1.09003 * 109.47006 * 179.97438 * 11 8 7 40 40 H 1.08995 * 109.47032 * 300.00187 * 11 8 7 41 41 H 1.09005 * 109.46082 * 180.02562 * 14 2 1 42 42 H 1.08997 * 109.49764 * 298.56028 * 15 14 2 43 43 H 1.09001 * 109.49635 * 58.66644 * 15 14 2 44 44 H 1.09002 * 109.60416 * 294.86434 * 16 15 14 45 45 H 1.08997 * 109.70255 * 174.50586 * 16 15 14 46 46 H 0.97001 * 120.00109 * 179.97438 * 21 20 18 47 47 H 1.08993 * 109.59164 * 293.82267 * 26 17 16 48 48 H 1.09003 * 109.70398 * 173.46548 * 26 17 16 49 49 H 1.08997 * 109.50230 * 301.33632 * 27 14 2 50 50 H 1.09004 * 109.49744 * 61.40397 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3513 1.1691 -0.0927 5 6 1.4057 2.4423 0.1124 6 6 1.9559 3.6897 0.0297 7 7 0.9482 4.5721 0.1829 8 6 1.0566 6.0329 0.1678 9 6 1.2538 6.5148 -1.2709 10 6 -0.2236 6.6453 0.7398 11 6 2.2527 6.4645 1.0188 12 7 -0.2234 3.8227 0.3608 13 7 0.0825 2.5730 0.3086 14 6 2.1974 -1.2688 -0.0061 15 6 1.8280 -2.0647 -1.2599 16 6 2.6219 -3.3747 -1.2805 17 7 2.3847 -4.0910 -0.0198 18 6 1.9517 -5.3900 -0.0262 19 1 1.3374 -5.7505 -0.8380 20 6 2.3024 -6.2436 1.0108 21 7 1.6939 -7.4032 1.1430 22 14 3.6380 -5.7467 2.2186 23 1 3.0202 -5.0800 3.3929 24 1 4.3750 -6.9556 2.6666 25 1 4.5804 -4.8094 1.5563 26 6 2.6217 -3.3871 1.2479 27 6 1.8281 -2.0767 1.2400 28 1 -0.3633 0.0987 1.0229 29 1 -0.3633 0.8366 -0.5969 30 1 -0.3634 -0.9351 -0.4261 31 1 2.9983 3.9243 -0.1283 32 1 0.4017 6.2075 -1.8770 33 1 1.3349 7.6017 -1.2821 34 1 2.1658 6.0786 -1.6784 35 1 -0.3640 6.3020 1.7648 36 1 -0.1427 7.7323 0.7290 37 1 -1.0757 6.3380 0.1337 38 1 3.1647 6.0283 0.6112 39 1 2.3336 7.5514 1.0071 40 1 2.1122 6.1211 2.0436 41 1 3.2691 -1.0695 -0.0047 42 1 0.7608 -2.2860 -1.2491 43 1 2.0698 -1.4791 -2.1469 44 1 3.6850 -3.1566 -1.3825 45 1 2.2934 -3.9903 -2.1179 46 1 1.9392 -7.9999 1.8674 47 1 3.6846 -3.1698 1.3522 48 1 2.2924 -4.0087 2.0806 49 1 2.0697 -1.4997 2.1326 50 1 0.7607 -2.2974 1.2273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005483035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:03 Heat of formation + Delta-G solvation = 96.977951 kcal Electronic energy + Delta-G solvation = -29798.759756 eV Core-core repulsion = 25864.637147 eV Total energy + Delta-G solvation = -3934.122609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.51757 -39.78647 -37.90039 -37.50591 -35.22770 -32.63258 -32.18710 -31.16600 -30.39363 -30.01812 -28.16854 -28.09081 -26.79550 -25.35341 -24.03564 -23.33646 -22.76837 -21.58195 -20.85488 -19.53696 -18.96449 -17.49143 -16.82936 -16.59767 -16.34442 -16.06777 -15.31876 -15.06111 -14.90181 -14.76862 -14.34650 -14.16106 -13.82383 -13.71056 -13.27315 -13.14162 -13.04951 -12.93079 -12.90998 -12.78065 -12.58610 -12.44882 -12.29053 -12.23020 -12.02583 -11.89137 -11.73689 -11.62585 -11.04488 -10.90843 -10.79670 -10.57500 -10.45307 -10.10235 -10.06810 -9.85899 -9.63781 -9.46811 -9.40332 -8.64538 -8.36056 -6.90620 -5.88977 -3.31093 0.93263 1.61592 1.67818 3.07243 3.28026 3.35588 3.51957 3.53848 3.71749 3.98614 4.01972 4.10836 4.41715 4.56064 4.66746 4.77311 4.81234 4.92356 4.95257 4.98568 5.01472 5.11072 5.13766 5.22128 5.32505 5.34102 5.43350 5.44952 5.47102 5.48247 5.65321 5.74489 5.82767 5.88162 6.08281 6.10653 6.15054 6.17042 6.25940 6.38166 6.47080 6.61226 6.66673 6.72865 6.81700 6.95484 7.50926 7.77090 8.02892 8.22352 8.37986 8.97579 9.75617 10.13917 11.27047 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002376 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.567393 B =11780.722402 C =11902.568284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.592 5.592 3 C 0.598 3.402 4 O -0.546 6.546 5 C -0.095 4.095 6 C 0.091 3.909 7 N -0.352 5.352 8 C 0.169 3.831 9 C -0.161 4.161 10 C -0.149 4.149 11 C -0.163 4.163 12 N -0.069 5.069 13 N -0.202 5.202 14 C 0.146 3.854 15 C -0.141 4.141 16 C 0.153 3.847 17 N -0.608 5.608 18 C -0.257 4.257 19 H 0.086 0.914 20 C 0.021 3.979 21 N -0.916 5.916 22 Si 0.890 3.110 23 H -0.290 1.290 24 H -0.305 1.305 25 H -0.266 1.266 26 C 0.126 3.874 27 C -0.139 4.139 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.200 0.800 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.262 0.738 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 32.376 -2.788 32.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.322 5.322 3 C 0.384 3.616 4 O -0.423 6.423 5 C -0.234 4.234 6 C -0.066 4.066 7 N -0.138 5.138 8 C 0.087 3.913 9 C -0.219 4.219 10 C -0.206 4.206 11 C -0.222 4.222 12 N -0.048 5.048 13 N -0.076 5.076 14 C 0.044 3.956 15 C -0.181 4.181 16 C 0.026 3.974 17 N -0.332 5.332 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.178 4.178 21 N -0.559 5.559 22 Si 0.722 3.278 23 H -0.218 1.218 24 H -0.234 1.234 25 H -0.190 1.190 26 C 0.000 4.000 27 C -0.180 4.180 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.216 0.784 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.446 32.288 -2.533 32.479 hybrid contribution 1.614 0.280 0.702 1.782 sum -0.833 32.568 -1.831 32.630 Atomic orbital electron populations 1.21967 0.78638 1.03045 1.02507 1.47899 1.07750 1.05506 1.71026 1.16854 0.86026 0.81905 0.76822 1.90785 1.12932 1.86778 1.51819 1.21508 0.90594 0.94892 1.16383 1.23217 0.96430 0.88798 0.98136 1.50810 1.06723 1.08012 1.48250 1.21089 0.98937 0.73285 0.98005 1.22289 1.03471 1.02726 0.93435 1.21991 0.95302 1.00952 1.02363 1.22307 0.96270 1.03326 1.00258 1.81967 1.04882 0.96047 1.21931 1.74856 1.12487 1.09951 1.10258 1.21184 0.97328 0.80959 0.96134 1.22387 1.01842 0.97761 0.96062 1.20883 0.96051 0.90882 0.89566 1.44368 1.78519 1.10964 0.99329 1.18935 1.25714 0.84202 1.09738 0.89641 1.25348 0.98408 0.95158 0.98865 1.69765 1.42678 1.10504 1.32966 0.86884 0.83495 0.76454 0.80968 1.21774 1.23400 1.19046 1.21421 0.96617 0.91636 0.90350 1.22391 1.02056 0.97390 0.96129 0.92367 0.90072 0.90839 0.78369 0.91185 0.89634 0.91349 0.91209 0.90155 0.90590 0.91099 0.89391 0.91100 0.88488 0.91467 0.92372 0.95648 0.91444 0.92802 0.95071 0.90918 0.92601 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.34 59.85 0.50 1.60 16 2 N -0.59 -9.21 2.76 -175.12 -0.48 -9.69 16 3 C 0.60 9.40 7.66 -12.48 -0.10 9.30 16 4 O -0.55 -9.80 16.21 5.28 0.09 -9.71 16 5 C -0.09 -1.25 6.65 -83.55 -0.56 -1.80 16 6 C 0.09 0.91 10.43 -16.83 -0.18 0.73 16 7 N -0.35 -3.12 3.44 -48.35 -0.17 -3.29 16 8 C 0.17 0.88 1.25 -131.82 -0.16 0.71 16 9 C -0.16 -0.62 8.74 37.16 0.32 -0.30 16 10 C -0.15 -0.69 8.11 37.16 0.30 -0.39 16 11 C -0.16 -0.58 8.30 37.16 0.31 -0.27 16 12 N -0.07 -0.81 12.91 60.35 0.78 -0.03 16 13 N -0.20 -2.68 9.01 32.85 0.30 -2.38 16 14 C 0.15 2.53 2.47 -67.89 -0.17 2.36 16 15 C -0.14 -2.40 5.32 -26.61 -0.14 -2.54 16 16 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 17 N -0.61 -14.61 2.78 -172.32 -0.48 -15.09 16 18 C -0.26 -7.25 10.08 -15.06 -0.15 -7.40 16 19 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 20 C 0.02 0.61 5.36 -17.43 -0.09 0.51 16 21 N -0.92 -28.44 13.97 55.49 0.78 -27.66 16 22 Si 0.89 22.90 24.27 -169.99 -4.13 18.78 16 23 H -0.29 -7.23 6.71 56.52 0.38 -6.85 16 24 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 25 H -0.27 -6.65 5.98 56.52 0.34 -6.31 16 26 C 0.13 2.81 4.12 -3.71 -0.02 2.80 16 27 C -0.14 -2.60 5.34 -26.61 -0.14 -2.75 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.08 1.05 5.85 -51.93 -0.30 0.75 16 30 H 0.07 0.98 6.47 -51.93 -0.34 0.64 16 31 H 0.20 1.46 7.63 -52.48 -0.40 1.06 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 38 H 0.07 0.23 7.44 -51.93 -0.39 -0.15 16 39 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 42 H 0.07 1.15 6.72 -51.93 -0.35 0.80 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 47 H 0.03 0.70 6.68 -51.93 -0.35 0.36 16 48 H 0.07 1.76 4.32 -51.93 -0.22 1.54 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 1.30 7.72 -51.93 -0.40 0.89 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -34.20 385.49 -6.03 -40.24 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.23 Total: -2.59 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.29 Total: 5.61 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.72 Total: -58.14 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.13 Total: 18.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.20 -6.03 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005483035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.215 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds