Wall clock time and date at job start Tue Mar 31 2020 18:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 C 1.52999 * 109.46818 * 239.99758 * 2 1 3 5 5 N 1.46502 * 109.47051 * 120.00181 * 2 1 3 6 6 C 1.34584 * 125.74823 * 74.98490 * 5 2 1 7 7 N 1.30882 * 107.62181 * 179.80164 * 6 5 2 8 8 C 1.34549 * 107.26757 * 0.36134 * 7 6 5 9 9 C 1.47867 * 126.04776 * 179.89380 * 8 7 6 10 10 O 1.21546 * 120.00279 * 179.69178 * 9 8 7 11 11 N 1.34784 * 119.99933 * 359.69295 * 9 8 7 12 12 C 1.46497 * 119.99936 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46927 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.70026 * 299.87668 * 13 12 11 15 15 C 1.52761 * 109.51048 * 179.75882 * 13 12 11 16 16 C 1.53031 * 109.38311 * 185.70892 * 15 13 12 17 17 C 1.53040 * 109.53974 * 61.23859 * 16 15 13 18 18 C 1.53192 * 109.31064 * 298.63184 * 17 16 15 19 19 N 1.46924 * 108.77485 * 54.64033 * 18 17 16 20 20 C 1.36936 * 120.63572 * 126.36640 * 19 18 17 21 21 H 1.07992 * 120.00141 * 201.58049 * 20 19 18 22 22 C 1.38812 * 119.99467 * 21.30039 * 20 19 18 23 23 N 1.31626 * 119.99553 * 218.65482 * 22 20 19 24 24 Si 1.86797 * 120.00219 * 38.65753 * 22 20 19 25 25 H 1.48503 * 109.47252 * 85.00322 * 24 22 20 26 26 H 1.48501 * 109.46894 * 205.00425 * 24 22 20 27 27 H 1.48501 * 109.47104 * 325.00266 * 24 22 20 28 28 N 1.28848 * 125.74579 * 255.02312 * 5 2 1 29 29 H 1.08996 * 109.46883 * 299.99731 * 1 2 3 30 30 H 1.08994 * 109.47188 * 59.99856 * 1 2 3 31 31 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46697 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46933 * 300.00220 * 3 2 1 34 34 H 1.08996 * 109.47061 * 60.00378 * 3 2 1 35 35 H 1.08994 * 109.47530 * 299.99795 * 4 2 1 36 36 H 1.09002 * 109.46992 * 59.99882 * 4 2 1 37 37 H 1.09001 * 109.46990 * 179.97438 * 4 2 1 38 38 H 1.07999 * 126.19241 * 0.03188 * 6 5 2 39 39 H 0.97000 * 119.99699 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.46802 * 60.00280 * 12 11 9 41 41 H 1.08992 * 109.47529 * 300.00186 * 12 11 9 42 42 H 1.09002 * 109.56650 * 65.66759 * 15 13 12 43 43 H 1.09003 * 109.38107 * 305.63317 * 15 13 12 44 44 H 1.09005 * 109.46176 * 301.21576 * 16 15 13 45 45 H 1.09006 * 109.45010 * 181.25338 * 16 15 13 46 46 H 1.09001 * 109.49642 * 178.68445 * 17 16 15 47 47 H 1.08994 * 109.49829 * 58.58694 * 17 16 15 48 48 H 1.09000 * 109.58771 * 294.84416 * 18 17 16 49 49 H 1.09000 * 109.69896 * 174.49105 * 18 17 16 50 50 H 0.97003 * 119.99128 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6907 1.1962 6 6 2.0136 -2.0221 1.3923 7 7 2.5316 -2.2506 2.5723 8 6 2.8486 -1.0574 3.1072 9 6 3.4595 -0.8337 4.4351 10 8 3.7059 0.2965 4.8082 11 7 3.7431 -1.8833 5.2318 12 6 4.3489 -1.6617 6.5472 13 6 4.5653 -3.0075 7.2421 14 1 3.6085 -3.5143 7.3678 15 6 5.2025 -2.7780 8.6114 16 6 5.5482 -4.1281 9.2435 17 6 6.5552 -4.8652 8.3576 18 6 5.9287 -5.1211 6.9833 19 7 5.4620 -3.8422 6.4308 20 6 5.8595 -3.4332 5.1859 21 1 5.8171 -2.3868 4.9222 22 6 6.3224 -4.3629 4.2650 23 7 7.3325 -4.0616 3.4766 24 14 5.5120 -6.0416 4.1445 25 1 4.3291 -5.9573 3.2507 26 1 6.4817 -7.0208 3.5911 27 1 5.0810 -6.4814 5.4958 28 7 2.5241 -0.1256 2.2379 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6517 -2.7675 0.6997 39 1 3.5468 -2.7853 4.9339 40 1 3.6866 -1.0430 7.1526 41 1 5.3072 -1.1569 6.4255 42 1 4.5033 -2.2435 9.2545 43 1 6.1116 -2.1883 8.4931 44 1 4.6423 -4.7268 9.3393 45 1 5.9825 -3.9664 10.2301 46 1 6.8186 -5.8164 8.8201 47 1 7.4515 -4.2561 8.2413 48 1 5.0855 -5.8038 7.0874 49 1 6.6721 -5.5576 6.3162 50 1 7.6557 -4.7112 2.8328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024649234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:03 Heat of formation + Delta-G solvation = 87.419964 kcal Electronic energy + Delta-G solvation = -30422.333418 eV Core-core repulsion = 26487.796344 eV Total energy + Delta-G solvation = -3934.537074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.24732 -39.11990 -37.86972 -37.28400 -34.25486 -32.96855 -32.43484 -31.09078 -30.63677 -30.42146 -27.88105 -27.75457 -26.39605 -25.00526 -23.41428 -22.79595 -22.57931 -20.74062 -20.03965 -19.88251 -19.25097 -17.64901 -16.66714 -16.40065 -16.04962 -15.55860 -15.50672 -14.78573 -14.55074 -14.43468 -14.32124 -13.67356 -13.63986 -13.54421 -13.30737 -13.07973 -12.99411 -12.77668 -12.64454 -12.41122 -12.15811 -12.01305 -11.96509 -11.92209 -11.62589 -11.61251 -11.27459 -11.23691 -10.66716 -10.42259 -10.41350 -10.16149 -10.12880 -10.05520 -9.82300 -9.73773 -9.47193 -9.26451 -9.17746 -8.35926 -8.18353 -6.98396 -5.95547 -3.10323 1.74156 2.24358 2.46933 3.47492 3.56259 3.60865 3.64824 3.96676 4.09999 4.32235 4.42647 4.44876 4.65373 4.84222 4.87630 5.04312 5.09599 5.21455 5.23135 5.31913 5.36506 5.37950 5.38975 5.46027 5.51598 5.58136 5.62470 5.76333 5.85356 5.93968 5.97256 6.05286 6.19650 6.25932 6.30677 6.34945 6.50825 6.52460 6.56987 6.61917 6.68077 6.73897 6.85210 6.90727 7.09855 7.16925 7.97281 8.11939 8.37702 8.45494 8.85499 9.01573 9.81870 10.18714 11.17407 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003571 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.912909 B = 7838.339232 C = 8948.247189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 C -0.148 4.148 4 C -0.161 4.161 5 N -0.298 5.298 6 C 0.183 3.817 7 N -0.470 5.470 8 C 0.152 3.848 9 C 0.610 3.390 10 O -0.542 6.542 11 N -0.674 5.674 12 C 0.134 3.866 13 C 0.164 3.836 14 H 0.036 0.964 15 C -0.128 4.128 16 C -0.107 4.107 17 C -0.140 4.140 18 C 0.147 3.853 19 N -0.598 5.598 20 C -0.278 4.278 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.876 5.876 24 Si 0.819 3.181 25 H -0.289 1.289 26 H -0.300 1.300 27 H -0.253 1.253 28 N -0.255 5.255 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.217 0.783 39 H 0.420 0.580 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.026 0.974 49 H 0.066 0.934 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 4.547 -4.902 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.095 5.095 6 C -0.113 4.113 7 N -0.195 5.195 8 C -0.128 4.128 9 C 0.391 3.609 10 O -0.418 6.418 11 N -0.326 5.326 12 C 0.010 3.990 13 C 0.057 3.943 14 H 0.053 0.947 15 C -0.168 4.168 16 C -0.145 4.145 17 C -0.179 4.179 18 C 0.021 3.979 19 N -0.323 5.323 20 C -0.404 4.404 21 H 0.112 0.888 22 C -0.157 4.157 23 N -0.516 5.516 24 Si 0.646 3.354 25 H -0.216 1.216 26 H -0.228 1.228 27 H -0.178 1.178 28 N -0.093 5.093 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.259 0.741 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.993 5.690 -4.479 14.874 hybrid contribution -0.525 -1.801 -0.918 2.089 sum -13.518 3.889 -5.396 15.066 Atomic orbital electron populations 1.22249 0.92030 1.03507 1.03856 1.21075 0.95064 0.94304 0.80970 1.21983 1.02773 0.92325 1.03469 1.22262 1.02968 1.01102 0.95574 1.47725 1.42084 1.06238 1.13465 1.26286 1.02129 0.86275 0.96606 1.71385 1.15221 1.25857 1.07016 1.23847 1.05474 0.85371 0.98091 1.16240 0.78510 0.85041 0.81096 1.90754 1.54514 1.22846 1.73722 1.45731 1.59853 1.09900 1.17086 1.21387 0.98227 0.97122 0.82224 1.20629 0.92766 0.90454 0.90480 0.94664 1.21856 1.01037 0.97253 0.96622 1.21360 0.98997 0.96491 0.97666 1.22087 0.99006 0.99122 0.97694 1.21392 0.96419 0.87693 0.92391 1.44408 1.52855 1.19735 1.15255 1.18937 1.38825 0.94368 0.88308 0.88757 1.25002 0.96959 0.96547 0.97156 1.70183 1.20914 1.36224 1.24321 0.88026 0.81124 0.86773 0.79476 1.21641 1.22757 1.17763 1.74242 1.14042 1.25503 0.95477 0.91321 0.89827 0.91408 0.91168 0.90580 0.90573 0.91152 0.89556 0.90988 0.76641 0.74090 0.92035 0.90714 0.92554 0.91524 0.92826 0.93198 0.93199 0.91867 0.95593 0.91615 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.72 37.16 0.32 -0.76 16 2 C 0.17 1.55 1.23 -131.82 -0.16 1.39 16 3 C -0.15 -1.38 8.04 37.16 0.30 -1.08 16 4 C -0.16 -1.12 8.28 37.16 0.31 -0.81 16 5 N -0.30 -4.17 3.17 -49.83 -0.16 -4.32 16 6 C 0.18 2.63 11.71 -90.47 -1.06 1.57 16 7 N -0.47 -8.99 11.09 -12.36 -0.14 -9.12 16 8 C 0.15 3.12 7.96 -156.35 -1.24 1.88 16 9 C 0.61 13.47 7.83 -12.32 -0.10 13.37 16 10 O -0.54 -13.02 17.08 5.32 0.09 -12.93 16 11 N -0.67 -14.20 3.65 -61.25 -0.22 -14.42 16 12 C 0.13 2.61 4.41 -4.04 -0.02 2.59 16 13 C 0.16 3.09 2.99 -67.82 -0.20 2.88 16 14 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 15 C -0.13 -2.07 5.34 -26.84 -0.14 -2.21 16 16 C -0.11 -1.65 5.88 -26.69 -0.16 -1.81 16 17 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 18 C 0.15 3.12 4.29 -3.71 -0.02 3.11 16 19 N -0.60 -13.50 2.81 -165.03 -0.46 -13.96 16 20 C -0.28 -7.36 7.61 -15.06 -0.11 -7.47 16 21 H 0.10 2.72 5.54 -52.49 -0.29 2.43 16 22 C 0.04 1.25 4.83 -17.43 -0.08 1.17 16 23 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 24 Si 0.82 20.65 26.50 -169.99 -4.50 16.14 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.25 -5.94 4.56 56.52 0.26 -5.68 16 28 N -0.25 -4.67 11.09 32.07 0.36 -4.31 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.07 0.41 7.34 -51.93 -0.38 0.03 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.22 2.06 7.53 -52.49 -0.40 1.66 16 39 H 0.42 9.22 7.10 -40.82 -0.29 8.93 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.62 7.50 -51.93 -0.39 1.23 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.03 0.55 6.78 -51.93 -0.35 0.20 16 49 H 0.07 1.55 5.24 -51.93 -0.27 1.27 16 50 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -34.75 388.84 -9.34 -44.09 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.41 Total: 7.51 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -2.53 Total: 11.18 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: 0.15 Total: -71.85 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.50 Total: 16.14 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.75 -9.34 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024649234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.509 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds