Wall clock time and date at job start Tue Mar 31 2020 18:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 C 1.52999 * 109.46818 * 239.99758 * 2 1 3 5 5 N 1.46502 * 109.47051 * 120.00181 * 2 1 3 6 6 C 1.34584 * 125.74823 * 74.98490 * 5 2 1 7 7 N 1.30882 * 107.62181 * 179.80164 * 6 5 2 8 8 C 1.34549 * 107.26757 * 0.36134 * 7 6 5 9 9 C 1.47867 * 126.04776 * 179.89380 * 8 7 6 10 10 O 1.21546 * 120.00279 * 179.69178 * 9 8 7 11 11 N 1.34784 * 119.99933 * 359.69295 * 9 8 7 12 12 C 1.46497 * 119.99936 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46927 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.70026 * 299.87668 * 13 12 11 15 15 C 1.52761 * 109.51048 * 179.75882 * 13 12 11 16 16 C 1.53031 * 109.38311 * 185.70892 * 15 13 12 17 17 C 1.53040 * 109.53974 * 61.23859 * 16 15 13 18 18 C 1.53192 * 109.31064 * 298.63184 * 17 16 15 19 19 N 1.46924 * 108.77485 * 54.64033 * 18 17 16 20 20 C 1.36936 * 120.63572 * 126.36640 * 19 18 17 21 21 H 1.07992 * 120.00141 * 201.58049 * 20 19 18 22 22 C 1.38812 * 119.99467 * 21.30039 * 20 19 18 23 23 N 1.31626 * 119.99553 * 218.65482 * 22 20 19 24 24 Si 1.86797 * 120.00219 * 38.65753 * 22 20 19 25 25 H 1.48503 * 109.47252 * 85.00322 * 24 22 20 26 26 H 1.48501 * 109.46894 * 205.00425 * 24 22 20 27 27 H 1.48501 * 109.47104 * 325.00266 * 24 22 20 28 28 N 1.28848 * 125.74579 * 255.02312 * 5 2 1 29 29 H 1.08996 * 109.46883 * 299.99731 * 1 2 3 30 30 H 1.08994 * 109.47188 * 59.99856 * 1 2 3 31 31 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46697 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46933 * 300.00220 * 3 2 1 34 34 H 1.08996 * 109.47061 * 60.00378 * 3 2 1 35 35 H 1.08994 * 109.47530 * 299.99795 * 4 2 1 36 36 H 1.09002 * 109.46992 * 59.99882 * 4 2 1 37 37 H 1.09001 * 109.46990 * 179.97438 * 4 2 1 38 38 H 1.07999 * 126.19241 * 0.03188 * 6 5 2 39 39 H 0.97000 * 119.99699 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.46802 * 60.00280 * 12 11 9 41 41 H 1.08992 * 109.47529 * 300.00186 * 12 11 9 42 42 H 1.09002 * 109.56650 * 65.66759 * 15 13 12 43 43 H 1.09003 * 109.38107 * 305.63317 * 15 13 12 44 44 H 1.09005 * 109.46176 * 301.21576 * 16 15 13 45 45 H 1.09006 * 109.45010 * 181.25338 * 16 15 13 46 46 H 1.09001 * 109.49642 * 178.68445 * 17 16 15 47 47 H 1.08994 * 109.49829 * 58.58694 * 17 16 15 48 48 H 1.09000 * 109.58771 * 294.84416 * 18 17 16 49 49 H 1.09000 * 109.69896 * 174.49105 * 18 17 16 50 50 H 0.97003 * 119.99128 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6907 1.1962 6 6 2.0136 -2.0221 1.3923 7 7 2.5316 -2.2506 2.5723 8 6 2.8486 -1.0574 3.1072 9 6 3.4595 -0.8337 4.4351 10 8 3.7059 0.2965 4.8082 11 7 3.7431 -1.8833 5.2318 12 6 4.3489 -1.6617 6.5472 13 6 4.5653 -3.0075 7.2421 14 1 3.6085 -3.5143 7.3678 15 6 5.2025 -2.7780 8.6114 16 6 5.5482 -4.1281 9.2435 17 6 6.5552 -4.8652 8.3576 18 6 5.9287 -5.1211 6.9833 19 7 5.4620 -3.8422 6.4308 20 6 5.8595 -3.4332 5.1859 21 1 5.8171 -2.3868 4.9222 22 6 6.3224 -4.3629 4.2650 23 7 7.3325 -4.0616 3.4766 24 14 5.5120 -6.0416 4.1445 25 1 4.3291 -5.9573 3.2507 26 1 6.4817 -7.0208 3.5911 27 1 5.0810 -6.4814 5.4958 28 7 2.5241 -0.1256 2.2379 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6517 -2.7675 0.6997 39 1 3.5468 -2.7853 4.9339 40 1 3.6866 -1.0430 7.1526 41 1 5.3072 -1.1569 6.4255 42 1 4.5033 -2.2435 9.2545 43 1 6.1116 -2.1883 8.4931 44 1 4.6423 -4.7268 9.3393 45 1 5.9825 -3.9664 10.2301 46 1 6.8186 -5.8164 8.8201 47 1 7.4515 -4.2561 8.2413 48 1 5.0855 -5.8038 7.0874 49 1 6.6721 -5.5576 6.3162 50 1 7.6557 -4.7112 2.8328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024649234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:02 Heat of formation + Delta-G solvation = 64.426197 kcal Electronic energy + Delta-G solvation = -30423.330503 eV Core-core repulsion = 26487.796344 eV Total energy + Delta-G solvation = -3935.534159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.51122 -40.78568 -39.43754 -38.21133 -35.89053 -34.85482 -33.69106 -32.63252 -32.40379 -31.77513 -28.53580 -28.41238 -27.94911 -26.73760 -24.85552 -24.25037 -24.00696 -22.24157 -21.51415 -21.07743 -20.79612 -19.10917 -18.22266 -17.65747 -17.45130 -17.20784 -17.07858 -16.60518 -15.79892 -15.60154 -15.34165 -15.16266 -14.99061 -14.91300 -14.81088 -14.72654 -14.23902 -13.81816 -13.78698 -13.59998 -13.30078 -13.25396 -13.24167 -13.02762 -12.87459 -12.79031 -12.61010 -12.39956 -12.15385 -12.01498 -11.99558 -11.67103 -11.46687 -11.45622 -11.40288 -11.38167 -11.10249 -10.99497 -10.56216 -10.36166 -9.93478 -8.89767 -8.10601 -5.20503 0.34795 1.12226 1.21591 1.42995 1.53771 1.56262 2.10810 2.37246 2.56383 2.97740 3.17232 3.30148 3.43833 3.65321 3.74688 3.78705 3.88633 3.92003 4.15549 4.24241 4.36662 4.47533 4.53900 4.55598 4.57755 4.59734 4.66535 4.67935 4.75323 4.76146 4.78498 4.93687 4.95455 5.03352 5.07585 5.12488 5.16342 5.20462 5.20584 5.30736 5.34905 5.37894 5.40611 5.49290 5.68874 5.70270 5.94831 6.25576 6.48166 6.99378 7.02093 7.19057 7.77689 8.15921 9.06287 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003571 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.912909 B = 7838.339232 C = 8948.247189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 C -0.148 4.148 4 C -0.158 4.158 5 N -0.286 5.286 6 C 0.193 3.807 7 N -0.508 5.508 8 C 0.116 3.884 9 C 0.603 3.397 10 O -0.574 6.574 11 N -0.672 5.672 12 C 0.135 3.865 13 C 0.162 3.838 14 H 0.056 0.944 15 C -0.123 4.123 16 C -0.102 4.102 17 C -0.134 4.134 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.245 4.245 21 H 0.061 0.939 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.880 3.120 25 H -0.299 1.299 26 H -0.314 1.314 27 H -0.222 1.222 28 N -0.269 5.269 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.416 0.584 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.301 3.313 -4.543 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 C -0.205 4.205 4 C -0.215 4.215 5 N -0.083 5.083 6 C -0.101 4.101 7 N -0.234 5.234 8 C -0.162 4.162 9 C 0.386 3.614 10 O -0.453 6.453 11 N -0.322 5.322 12 C 0.012 3.988 13 C 0.057 3.943 14 H 0.073 0.927 15 C -0.163 4.163 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.015 3.985 19 N -0.335 5.335 20 C -0.373 4.373 21 H 0.078 0.922 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.709 3.291 25 H -0.228 1.228 26 H -0.242 1.242 27 H -0.146 1.146 28 N -0.109 5.109 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.282 0.718 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.870 4.437 -4.071 16.974 hybrid contribution 0.304 -1.273 -1.099 1.709 sum -15.566 3.164 -5.170 16.704 Atomic orbital electron populations 1.22263 0.89487 1.04613 1.04606 1.21722 0.96924 0.94006 0.79949 1.22014 1.01166 0.92975 1.04348 1.22319 1.01587 1.02346 0.95285 1.48238 1.40178 1.06559 1.13321 1.27114 1.00108 0.87150 0.95757 1.71283 1.16933 1.25884 1.09256 1.23550 1.07888 0.86567 0.98229 1.16575 0.78136 0.84740 0.81926 1.90703 1.56090 1.23814 1.74717 1.45745 1.59467 1.09384 1.17571 1.21471 0.97195 0.98021 0.82144 1.20881 0.93068 0.89192 0.91198 0.92681 1.21830 1.00901 0.98321 0.95228 1.21359 0.99026 0.95413 0.98140 1.21995 0.98666 1.00597 0.96050 1.21459 0.96231 0.86929 0.93925 1.44545 1.53942 1.20763 1.14258 1.18763 1.36022 0.92770 0.89762 0.92171 1.25482 0.97718 0.99988 0.97799 1.70286 1.23367 1.37679 1.26507 0.87046 0.79061 0.82545 0.80488 1.22783 1.24169 1.14559 1.74153 1.14255 1.26052 0.96462 0.93187 0.86425 0.90139 0.93682 0.86685 0.92686 0.89427 0.86159 0.93217 0.71832 0.74631 0.89534 0.93849 0.89131 0.93192 0.91225 0.90359 0.90572 0.93771 0.94406 0.94399 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.72 71.98 0.63 -0.99 16 2 C 0.15 2.55 1.23 3.60 0.00 2.56 16 3 C -0.15 -2.65 8.04 71.98 0.58 -2.07 16 4 C -0.16 -1.72 8.28 71.98 0.60 -1.13 16 5 N -0.29 -7.88 3.17 -311.57 -0.99 -8.86 16 6 C 0.19 5.36 11.71 180.30 2.11 7.48 16 7 N -0.51 -19.77 11.09 -193.03 -2.14 -21.91 16 8 C 0.12 4.99 7.96 137.13 1.09 6.08 16 9 C 0.60 28.17 7.83 86.79 0.68 28.85 16 10 O -0.57 -29.23 17.08 -3.86 -0.07 -29.29 16 11 N -0.67 -29.40 3.65 -465.96 -1.70 -31.10 16 12 C 0.14 5.34 4.41 86.38 0.38 5.72 16 13 C 0.16 5.89 2.99 44.83 0.13 6.03 16 14 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.12 -3.64 5.34 30.52 0.16 -3.48 16 16 C -0.10 -2.71 5.88 30.62 0.18 -2.53 16 17 C -0.13 -4.39 6.08 30.67 0.19 -4.20 16 18 C 0.14 5.71 4.29 86.36 0.37 6.08 16 19 N -0.61 -27.34 2.81 -676.03 -1.90 -29.24 16 20 C -0.24 -13.38 7.61 84.03 0.64 -12.74 16 21 H 0.06 3.69 5.54 -2.91 -0.02 3.68 16 22 C -0.01 -0.76 4.83 84.86 0.41 -0.35 16 23 N -0.93 -59.33 13.97 21.65 0.30 -59.03 16 24 Si 0.88 43.93 26.50 68.60 1.82 45.75 16 25 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 26 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 27 H -0.22 -9.83 4.56 99.48 0.45 -9.37 16 28 N -0.27 -10.23 11.09 -52.44 -0.58 -10.82 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.21 8.02 -2.39 -0.02 1.20 16 35 H 0.09 0.68 7.34 -2.39 -0.02 0.66 16 36 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.27 4.18 7.53 -2.91 -0.02 4.16 16 39 H 0.42 18.81 7.10 -92.71 -0.66 18.16 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.04 1.98 7.50 -2.39 -0.02 1.96 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.04 1.48 6.78 -2.39 -0.02 1.46 16 49 H 0.04 1.76 5.24 -2.39 -0.01 1.75 16 50 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -82.95 388.84 2.92 -80.03 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.03 Total: 29.16 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 8.15 Total: 35.31 kcal Atomic # 7 Polarization: -153.95 SS G_CDS: -7.01 Total: -160.95 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.07 Total: -29.29 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.82 Total: 45.75 kcal Total: -82.95 2.92 -80.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024649234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.455 kcal (2) G-P(sol) polarization free energy of solvation -82.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds