Wall clock time and date at job start Tue Mar 31 2020 19:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47197 * 2 1 4 4 N 1.46499 * 109.47028 * 179.97438 * 3 2 1 5 5 C 1.34814 * 126.59642 * 124.99948 * 4 3 2 6 6 C 1.36589 * 106.84487 * 179.97438 * 5 4 3 7 7 C 1.47523 * 125.77474 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99801 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00180 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00291 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46838 * 325.00183 * 10 9 7 12 12 C 1.53004 * 109.46892 * 84.99858 * 10 9 7 13 13 C 1.52995 * 109.47707 * 204.99775 * 10 9 7 14 14 H 1.09001 * 109.49125 * 60.06153 * 13 10 9 15 15 C 1.53032 * 109.52870 * 180.14473 * 13 10 9 16 16 C 1.53036 * 109.54203 * 181.33727 * 15 13 10 17 17 C 1.53630 * 109.24100 * 298.51188 * 16 15 13 18 18 N 1.46929 * 108.54105 * 54.85378 * 17 16 15 19 19 C 1.36936 * 120.62839 * 126.37570 * 18 17 16 20 20 H 1.08001 * 119.99493 * 207.52679 * 19 18 17 21 21 C 1.38811 * 120.00212 * 27.52222 * 19 18 17 22 22 N 1.31616 * 119.99796 * 25.85089 * 21 19 18 23 23 Si 1.86798 * 119.99834 * 205.57383 * 21 19 18 24 24 H 1.48497 * 109.47151 * 90.00469 * 23 21 19 25 25 H 1.48500 * 109.46743 * 210.00191 * 23 21 19 26 26 H 1.48499 * 109.47212 * 329.99989 * 23 21 19 27 27 C 1.46929 * 118.73997 * 306.09298 * 18 17 16 28 28 N 1.34408 * 108.45559 * 0.24608 * 6 5 4 29 29 N 1.28758 * 109.52158 * 359.58272 * 28 6 5 30 30 H 1.09002 * 109.47013 * 59.99821 * 1 2 3 31 31 H 1.09000 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47101 * 300.00325 * 1 2 3 33 33 H 1.08997 * 109.47368 * 239.99797 * 2 1 3 34 34 H 1.09005 * 109.47063 * 119.99657 * 2 1 3 35 35 H 1.08993 * 109.47305 * 60.00095 * 3 2 1 36 36 H 1.08996 * 109.46607 * 299.99901 * 3 2 1 37 37 H 1.08005 * 126.57524 * 359.97438 * 5 4 3 38 38 H 0.97002 * 120.00401 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.46866 * 300.00017 * 12 10 9 40 40 H 1.08999 * 109.47114 * 60.00494 * 12 10 9 41 41 H 1.08998 * 109.46827 * 180.02562 * 12 10 9 42 42 H 1.09007 * 109.46104 * 301.35801 * 15 13 10 43 43 H 1.09003 * 109.46087 * 61.31347 * 15 13 10 44 44 H 1.09004 * 109.50061 * 58.58117 * 16 15 13 45 45 H 1.08995 * 109.50113 * 178.65377 * 16 15 13 46 46 H 1.09003 * 109.73907 * 295.12133 * 17 16 15 47 47 H 1.08993 * 109.66768 * 174.54799 * 17 16 15 48 48 H 0.96996 * 120.00373 * 4.05514 * 22 21 19 49 49 H 1.08992 * 109.58740 * 173.64770 * 27 18 17 50 50 H 1.08997 * 109.58765 * 294.08054 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3091 2.0631 -0.8858 6 6 5.5945 1.7989 -0.5067 7 6 6.8109 2.2774 -1.1905 8 8 6.7165 2.9723 -2.1839 9 7 8.0269 1.9445 -0.7141 10 6 9.2350 2.4202 -1.3928 11 1 9.0585 2.4532 -2.4679 12 6 9.5838 3.8224 -0.8898 13 6 10.3954 1.4684 -1.0955 14 1 10.1477 0.4696 -1.4546 15 6 11.6589 1.9662 -1.8010 16 6 12.8117 0.9966 -1.5310 17 6 13.0890 0.9477 -0.0208 18 7 11.8394 0.6071 0.6730 19 6 11.7914 -0.4456 1.5473 20 1 10.8619 -0.9711 1.7093 21 6 12.9375 -0.8375 2.2255 22 7 13.8992 0.0326 2.4499 23 14 13.1114 -2.5976 2.8263 24 1 13.7551 -3.4197 1.7703 25 1 13.9495 -2.6217 4.0519 26 1 11.7681 -3.1506 3.1342 27 6 10.6438 1.4215 0.4155 28 7 5.5636 1.0241 0.5912 29 7 4.3405 0.7974 0.9235 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9968 2.6557 -1.7330 38 1 8.1023 1.3899 0.0781 39 1 8.7571 4.5005 -1.1017 40 1 9.7603 3.7893 0.1853 41 1 10.4824 4.1765 -1.3951 42 1 11.4768 2.0241 -2.8741 43 1 11.9200 2.9549 -1.4234 44 1 12.5413 0.0020 -1.8860 45 1 13.7050 1.3389 -2.0533 46 1 13.4428 1.9207 0.3202 47 1 13.8423 0.1885 0.1895 48 1 13.7828 0.9610 2.1941 49 1 9.7833 0.9749 0.9136 50 1 10.8023 2.4323 0.7912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025579040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:38 Heat of formation + Delta-G solvation = 62.598856 kcal Electronic energy + Delta-G solvation = -29223.710290 eV Core-core repulsion = 25288.096892 eV Total energy + Delta-G solvation = -3935.613398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.39512 -39.71163 -38.03421 -36.39542 -35.32304 -33.27681 -32.90234 -31.47813 -30.48479 -30.32818 -28.11391 -27.44382 -25.08950 -24.55668 -23.40871 -22.93013 -22.14736 -21.85364 -20.59807 -20.06559 -18.73568 -18.16952 -17.29989 -16.55617 -16.36599 -15.97371 -15.57078 -14.98465 -14.76321 -14.54603 -14.40104 -14.12249 -13.95165 -13.69361 -13.54556 -13.31234 -13.19145 -12.76752 -12.65125 -12.48563 -12.40074 -12.14138 -12.04184 -11.95503 -11.58137 -11.56971 -11.30231 -10.98113 -10.76636 -10.59607 -10.52071 -10.34641 -10.16855 -10.07002 -10.02591 -9.84401 -9.73192 -9.49158 -9.20344 -8.88944 -8.29445 -6.81038 -6.03452 -3.16631 0.92438 1.61377 1.74628 3.20697 3.29088 3.55125 3.56593 3.73336 3.86275 4.03883 4.16737 4.44186 4.55791 4.62940 4.65250 4.75871 4.80557 4.98823 5.01417 5.13465 5.20691 5.37730 5.40197 5.42504 5.43992 5.52832 5.59584 5.63110 5.66554 5.68821 5.81798 5.96868 6.08861 6.09990 6.17516 6.18770 6.29893 6.42644 6.53093 6.57203 6.64534 6.74609 6.76153 6.89991 7.15559 7.25739 7.53956 7.83610 8.07237 8.23904 8.63291 9.17269 9.90534 10.35291 11.26674 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002677 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.519032 B =10457.141649 C =12293.785365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.090 3.910 6 C -0.100 4.100 7 C 0.604 3.396 8 O -0.547 6.547 9 N -0.703 5.703 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.165 4.165 13 C -0.113 4.113 14 H 0.073 0.927 15 C -0.100 4.100 16 C -0.137 4.137 17 C 0.150 3.850 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.057 0.943 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.067 2.933 24 H -0.294 1.294 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.152 3.848 28 N -0.200 5.200 29 N -0.062 5.062 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.204 0.796 38 H 0.411 0.589 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.078 0.922 48 H 0.269 0.731 49 H 0.051 0.949 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.854 5.491 -9.032 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.067 4.067 6 C -0.239 4.239 7 C 0.388 3.612 8 O -0.425 6.425 9 N -0.354 5.354 10 C 0.046 3.954 11 H 0.102 0.898 12 C -0.223 4.223 13 C -0.134 4.134 14 H 0.092 0.908 15 C -0.139 4.139 16 C -0.176 4.176 17 C 0.024 3.976 18 N -0.321 5.321 19 C -0.478 4.478 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.557 5.557 23 Si 0.897 3.103 24 H -0.221 1.221 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.026 3.974 28 N -0.073 5.073 29 N -0.042 5.042 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.220 0.780 38 H 0.248 0.752 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -22.870 4.011 -7.680 24.456 hybrid contribution -1.324 1.434 -1.273 2.330 sum -24.194 5.445 -8.952 26.365 Atomic orbital electron populations 1.21704 0.93828 1.02928 1.02303 1.21843 0.96962 0.94543 1.04381 1.22154 0.72571 1.00141 1.05112 1.50601 1.08826 1.35316 1.20077 1.23358 0.90172 0.97171 0.95979 1.21556 0.94661 1.08283 0.99431 1.16756 0.81904 0.79583 0.82959 1.90778 1.86794 1.39099 1.25818 1.46033 1.04860 1.52691 1.31811 1.21063 0.83236 0.93949 0.97154 0.89777 1.22269 1.01583 0.96103 1.02388 1.21940 0.93175 0.98256 1.00012 0.90818 1.21430 0.94766 0.99193 0.98468 1.22135 0.96756 0.98878 0.99861 1.21046 0.89904 0.98522 0.88157 1.44105 1.05750 1.33863 1.48387 1.20005 0.99050 1.07876 1.20863 0.92567 1.25817 0.94995 1.05567 0.96293 1.70755 1.37087 1.04034 1.43803 0.83479 0.75252 0.75266 0.76287 1.22120 1.21667 1.21836 1.20972 0.90983 0.94363 0.91081 1.74721 1.12798 1.09719 1.10094 1.82013 0.93374 1.17200 1.11624 0.92254 0.91586 0.92066 0.90991 0.89899 0.88316 0.87740 0.77966 0.75194 0.92729 0.91669 0.91285 0.93226 0.92139 0.92414 0.93057 0.96592 0.90407 0.92020 0.93029 0.95934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.91 37.16 0.37 -0.09 16 2 C -0.14 -0.68 6.14 -26.73 -0.16 -0.84 16 3 C 0.12 0.57 6.54 -4.04 -0.03 0.54 16 4 N -0.36 -3.33 3.69 -61.06 -0.23 -3.55 16 5 C 0.09 0.88 11.27 -16.84 -0.19 0.69 16 6 C -0.10 -1.34 6.99 -83.55 -0.58 -1.92 16 7 C 0.60 9.06 7.78 -12.48 -0.10 8.96 16 8 O -0.55 -9.05 16.53 5.28 0.09 -8.96 16 9 N -0.70 -10.67 5.00 -54.85 -0.27 -10.94 16 10 C 0.15 2.27 2.41 -67.93 -0.16 2.11 16 11 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 12 C -0.17 -2.36 8.79 37.16 0.33 -2.03 16 13 C -0.11 -1.94 2.33 -90.50 -0.21 -2.15 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.10 -1.65 4.77 -26.70 -0.13 -1.78 16 16 C -0.14 -2.58 6.10 -26.39 -0.16 -2.74 16 17 C 0.15 3.50 4.72 -3.48 -0.02 3.48 16 18 N -0.60 -14.89 2.85 -172.05 -0.49 -15.38 16 19 C -0.35 -9.78 9.48 -15.06 -0.14 -9.93 16 20 H 0.06 1.60 7.95 -52.49 -0.42 1.18 16 21 C -0.02 -0.71 4.66 -17.43 -0.08 -0.79 16 22 N -0.92 -27.63 12.46 55.49 0.69 -26.94 16 23 Si 1.07 25.72 29.99 -169.99 -5.10 20.62 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.15 3.14 5.29 -3.71 -0.02 3.13 16 28 N -0.20 -2.94 12.04 32.85 0.40 -2.55 16 29 N -0.06 -0.81 13.65 60.35 0.82 0.02 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.20 8.08 -51.93 -0.42 -0.22 16 37 H 0.20 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.41 6.43 6.65 -40.82 -0.27 6.16 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.98 6.32 -51.93 -0.33 0.65 16 41 H 0.07 0.91 6.46 -51.93 -0.34 0.58 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 47 H 0.08 2.05 6.31 -51.93 -0.33 1.72 16 48 H 0.27 8.15 6.69 -40.82 -0.27 7.88 16 49 H 0.05 1.08 6.52 -51.93 -0.34 0.74 16 50 H 0.02 0.47 6.18 -51.93 -0.32 0.15 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -33.94 395.43 -7.46 -41.40 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.04 Total: 3.69 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.29 Total: -3.36 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.92 Total: -59.35 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.10 Total: 20.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.94 -7.46 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025579040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.996 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds