Wall clock time and date at job start Tue Mar 31 2020 19:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47197 * 2 1 4 4 N 1.46499 * 109.47028 * 179.97438 * 3 2 1 5 5 C 1.34814 * 126.59642 * 124.99948 * 4 3 2 6 6 C 1.36589 * 106.84487 * 179.97438 * 5 4 3 7 7 C 1.47523 * 125.77474 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99801 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00180 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00291 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46838 * 325.00183 * 10 9 7 12 12 C 1.53004 * 109.46892 * 84.99858 * 10 9 7 13 13 C 1.52995 * 109.47707 * 204.99775 * 10 9 7 14 14 H 1.09001 * 109.49125 * 60.06153 * 13 10 9 15 15 C 1.53032 * 109.52870 * 180.14473 * 13 10 9 16 16 C 1.53036 * 109.54203 * 181.33727 * 15 13 10 17 17 C 1.53630 * 109.24100 * 298.51188 * 16 15 13 18 18 N 1.46929 * 108.54105 * 54.85378 * 17 16 15 19 19 C 1.36936 * 120.62839 * 126.37570 * 18 17 16 20 20 H 1.08001 * 119.99493 * 207.52679 * 19 18 17 21 21 C 1.38811 * 120.00212 * 27.52222 * 19 18 17 22 22 N 1.31616 * 119.99796 * 25.85089 * 21 19 18 23 23 Si 1.86798 * 119.99834 * 205.57383 * 21 19 18 24 24 H 1.48497 * 109.47151 * 90.00469 * 23 21 19 25 25 H 1.48500 * 109.46743 * 210.00191 * 23 21 19 26 26 H 1.48499 * 109.47212 * 329.99989 * 23 21 19 27 27 C 1.46929 * 118.73997 * 306.09298 * 18 17 16 28 28 N 1.34408 * 108.45559 * 0.24608 * 6 5 4 29 29 N 1.28758 * 109.52158 * 359.58272 * 28 6 5 30 30 H 1.09002 * 109.47013 * 59.99821 * 1 2 3 31 31 H 1.09000 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47101 * 300.00325 * 1 2 3 33 33 H 1.08997 * 109.47368 * 239.99797 * 2 1 3 34 34 H 1.09005 * 109.47063 * 119.99657 * 2 1 3 35 35 H 1.08993 * 109.47305 * 60.00095 * 3 2 1 36 36 H 1.08996 * 109.46607 * 299.99901 * 3 2 1 37 37 H 1.08005 * 126.57524 * 359.97438 * 5 4 3 38 38 H 0.97002 * 120.00401 * 0.02562 * 9 7 6 39 39 H 1.09002 * 109.46866 * 300.00017 * 12 10 9 40 40 H 1.08999 * 109.47114 * 60.00494 * 12 10 9 41 41 H 1.08998 * 109.46827 * 180.02562 * 12 10 9 42 42 H 1.09007 * 109.46104 * 301.35801 * 15 13 10 43 43 H 1.09003 * 109.46087 * 61.31347 * 15 13 10 44 44 H 1.09004 * 109.50061 * 58.58117 * 16 15 13 45 45 H 1.08995 * 109.50113 * 178.65377 * 16 15 13 46 46 H 1.09003 * 109.73907 * 295.12133 * 17 16 15 47 47 H 1.08993 * 109.66768 * 174.54799 * 17 16 15 48 48 H 0.96996 * 120.00373 * 4.05514 * 22 21 19 49 49 H 1.08992 * 109.58740 * 173.64770 * 27 18 17 50 50 H 1.08997 * 109.58765 * 294.08054 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3091 2.0631 -0.8858 6 6 5.5945 1.7989 -0.5067 7 6 6.8109 2.2774 -1.1905 8 8 6.7165 2.9723 -2.1839 9 7 8.0269 1.9445 -0.7141 10 6 9.2350 2.4202 -1.3928 11 1 9.0585 2.4532 -2.4679 12 6 9.5838 3.8224 -0.8898 13 6 10.3954 1.4684 -1.0955 14 1 10.1477 0.4696 -1.4546 15 6 11.6589 1.9662 -1.8010 16 6 12.8117 0.9966 -1.5310 17 6 13.0890 0.9477 -0.0208 18 7 11.8394 0.6071 0.6730 19 6 11.7914 -0.4456 1.5473 20 1 10.8619 -0.9711 1.7093 21 6 12.9375 -0.8375 2.2255 22 7 13.8992 0.0326 2.4499 23 14 13.1114 -2.5976 2.8263 24 1 13.7551 -3.4197 1.7703 25 1 13.9495 -2.6217 4.0519 26 1 11.7681 -3.1506 3.1342 27 6 10.6438 1.4215 0.4155 28 7 5.5636 1.0241 0.5912 29 7 4.3405 0.7974 0.9235 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9968 2.6557 -1.7330 38 1 8.1023 1.3899 0.0781 39 1 8.7571 4.5005 -1.1017 40 1 9.7603 3.7893 0.1853 41 1 10.4824 4.1765 -1.3951 42 1 11.4768 2.0241 -2.8741 43 1 11.9200 2.9549 -1.4234 44 1 12.5413 0.0020 -1.8860 45 1 13.7050 1.3389 -2.0533 46 1 13.4428 1.9207 0.3202 47 1 13.8423 0.1885 0.1895 48 1 13.7828 0.9610 2.1941 49 1 9.7833 0.9749 0.9136 50 1 10.8023 2.4323 0.7912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025579040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:37 Heat of formation + Delta-G solvation = 40.043863 kcal Electronic energy + Delta-G solvation = -29224.688348 eV Core-core repulsion = 25288.096892 eV Total energy + Delta-G solvation = -3936.591456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.26934 -40.96244 -39.52093 -36.94905 -36.88000 -34.83928 -33.64727 -32.72399 -32.21892 -31.58161 -29.52043 -27.98402 -27.05529 -25.77539 -24.52050 -23.94018 -23.60622 -22.54455 -22.01664 -21.17359 -20.22426 -19.40530 -19.03444 -17.33571 -17.27584 -17.12320 -16.32570 -16.30699 -16.05413 -15.74955 -15.64113 -15.48713 -15.44352 -15.11370 -14.93829 -14.45251 -14.36709 -13.89668 -13.70650 -13.62130 -13.53828 -13.21847 -12.98362 -12.89531 -12.74556 -12.62426 -12.52031 -12.25253 -12.10417 -11.90840 -11.88110 -11.76754 -11.74104 -11.60545 -11.42360 -11.30505 -11.16307 -11.05682 -10.44270 -10.42476 -10.07008 -8.88414 -8.25074 -5.37053 0.13015 0.57882 1.09543 1.57504 1.64766 1.82396 2.10386 2.20692 2.65272 3.15252 3.21748 3.33022 3.47948 3.75951 3.81128 3.86332 3.90054 3.92761 3.99248 4.14205 4.20921 4.25768 4.33504 4.38401 4.44520 4.51345 4.55069 4.58943 4.68793 4.75946 4.77888 4.81274 4.90146 4.96325 5.06008 5.09845 5.12544 5.16014 5.17991 5.25637 5.30450 5.31006 5.39254 5.47129 5.49096 5.59039 5.85840 6.37663 6.41247 6.86224 7.08081 7.09218 7.80446 8.24641 9.01172 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002677 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.519032 B =10457.141649 C =12293.785365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.111 3.889 4 N -0.348 5.348 5 C 0.114 3.886 6 C -0.130 4.130 7 C 0.607 3.393 8 O -0.564 6.564 9 N -0.709 5.709 10 C 0.159 3.841 11 H 0.092 0.908 12 C -0.159 4.159 13 C -0.098 4.098 14 H 0.060 0.940 15 C -0.096 4.096 16 C -0.127 4.127 17 C 0.153 3.847 18 N -0.617 5.617 19 C -0.353 4.353 20 H 0.046 0.954 21 C -0.076 4.076 22 N -0.942 5.942 23 Si 1.115 2.885 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.153 3.847 28 N -0.233 5.233 29 N -0.090 5.090 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.243 0.757 38 H 0.407 0.593 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.007 0.993 47 H 0.040 0.960 48 H 0.255 0.745 49 H 0.041 0.959 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.157 6.359 -11.085 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.045 4.045 6 C -0.270 4.270 7 C 0.392 3.608 8 O -0.442 6.442 9 N -0.358 5.358 10 C 0.054 3.946 11 H 0.110 0.890 12 C -0.217 4.217 13 C -0.119 4.119 14 H 0.079 0.921 15 C -0.134 4.134 16 C -0.166 4.166 17 C 0.027 3.973 18 N -0.341 5.341 19 C -0.483 4.483 20 H 0.064 0.936 21 C -0.272 4.272 22 N -0.584 5.584 23 Si 0.940 3.060 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.202 1.202 27 C 0.028 3.972 28 N -0.106 5.106 29 N -0.071 5.071 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.162 0.838 37 H 0.259 0.741 38 H 0.243 0.757 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.025 0.975 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -25.225 4.882 -9.739 27.477 hybrid contribution -0.754 1.205 -0.640 1.559 sum -25.979 6.087 -10.379 28.630 Atomic orbital electron populations 1.21675 0.92117 1.03063 1.03394 1.21792 0.98317 0.94474 1.02852 1.22674 0.69831 1.00467 1.07814 1.50917 1.10178 1.33536 1.18630 1.23896 0.88822 0.95771 0.95984 1.21569 0.95452 1.09845 1.00105 1.16912 0.82138 0.79062 0.82664 1.90755 1.87077 1.39925 1.26488 1.46083 1.05264 1.52808 1.31692 1.20963 0.82402 0.93679 0.97526 0.89021 1.22217 1.02354 0.95504 1.01636 1.21724 0.94762 0.98388 0.96995 0.92128 1.21434 0.92920 0.98639 1.00406 1.22005 0.99029 0.99441 0.96124 1.20949 0.88485 0.96556 0.91260 1.44345 1.07324 1.34080 1.48356 1.20199 0.98666 1.08578 1.20864 0.93603 1.27110 0.94948 1.08413 0.96735 1.70872 1.37967 1.03613 1.45904 0.82841 0.75924 0.71379 0.75882 1.20982 1.21952 1.20153 1.21059 0.88996 0.93433 0.93742 1.74692 1.13932 1.10834 1.11183 1.81923 0.93441 1.18556 1.13155 0.90665 0.92006 0.91429 0.91839 0.92208 0.86864 0.83773 0.74131 0.75727 0.92413 0.92917 0.89826 0.89899 0.91215 0.93267 0.90497 0.97546 0.94101 0.93542 0.94064 0.95850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.91 71.98 0.71 0.15 16 2 C -0.14 -1.12 6.14 30.59 0.19 -0.93 16 3 C 0.11 0.71 6.54 86.38 0.56 1.28 16 4 N -0.35 -5.72 3.69 -347.11 -1.28 -7.00 16 5 C 0.11 1.94 11.27 83.85 0.95 2.89 16 6 C -0.13 -3.38 6.99 40.81 0.29 -3.09 16 7 C 0.61 17.70 7.78 86.69 0.67 18.38 16 8 O -0.56 -17.64 16.53 -4.02 -0.07 -17.71 16 9 N -0.71 -21.31 5.00 -445.71 -2.23 -23.54 16 10 C 0.16 4.58 2.41 44.99 0.11 4.69 16 11 H 0.09 2.59 7.58 -2.39 -0.02 2.57 16 12 C -0.16 -4.28 8.79 71.98 0.63 -3.64 16 13 C -0.10 -3.28 2.33 -10.72 -0.02 -3.30 16 14 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.10 -2.93 4.77 30.62 0.15 -2.78 16 16 C -0.13 -4.63 6.10 30.82 0.19 -4.44 16 17 C 0.15 7.30 4.72 86.51 0.41 7.71 16 18 N -0.62 -31.50 2.85 -698.24 -1.99 -33.49 16 19 C -0.35 -20.37 9.48 84.03 0.80 -19.57 16 20 H 0.05 2.69 7.95 -2.91 -0.02 2.67 16 21 C -0.08 -4.42 4.66 84.86 0.40 -4.02 16 22 N -0.94 -58.54 12.46 21.65 0.27 -58.27 16 23 Si 1.11 52.80 29.99 68.60 2.06 54.86 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.15 6.41 5.29 86.36 0.46 6.86 16 28 N -0.23 -6.98 12.04 -49.99 -0.60 -7.59 16 29 N -0.09 -2.36 13.65 37.02 0.51 -1.85 16 30 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.14 -0.14 8.08 -2.39 -0.02 -0.16 16 37 H 0.24 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.41 13.07 6.65 -92.71 -0.62 12.45 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.54 6.32 -2.39 -0.02 1.53 16 41 H 0.08 1.99 6.46 -2.39 -0.02 1.98 16 42 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.07 2.04 6.50 -2.39 -0.02 2.02 16 44 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 46 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16 47 H 0.04 2.23 6.31 -2.39 -0.02 2.21 16 48 H 0.25 16.10 6.69 -92.71 -0.62 15.48 16 49 H 0.04 1.78 6.52 -2.39 -0.02 1.76 16 50 H 0.02 0.99 6.18 -2.39 -0.01 0.97 16 Total: -1.00 -76.79 395.43 3.62 -73.17 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.48 Total: 21.25 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.48 Total: 0.16 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -5.32 Total: -131.74 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.07 Total: -17.71 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.06 Total: 54.86 kcal Total: -76.79 3.62 -73.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025579040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.214 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds