Wall clock time and date at job start Tue Mar 31 2020 18:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36935 * 119.99852 * 2 1 4 4 H 1.08005 * 120.00387 * 210.24700 * 3 2 1 5 5 C 1.38814 * 119.99832 * 30.25800 * 3 2 1 6 6 N 1.31618 * 119.99907 * 7.35298 * 5 3 2 7 7 Si 1.86802 * 120.00024 * 187.36141 * 5 3 2 8 8 H 1.48508 * 109.46993 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47423 * 119.99575 * 7 5 3 10 10 H 1.48503 * 109.47070 * 239.99761 * 7 5 3 11 11 C 1.46499 * 120.00440 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.50309 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49942 * 59.99689 * 11 2 1 14 14 C 1.53043 * 109.53840 * 178.68988 * 13 11 2 15 15 C 1.53190 * 109.31399 * 61.36229 * 14 13 11 16 16 N 1.46925 * 108.77767 * 305.36730 * 15 14 13 17 17 C 1.34779 * 120.62813 * 233.60957 * 16 15 14 18 18 O 1.21561 * 119.99534 * 183.07616 * 17 16 15 19 19 C 1.47866 * 120.00274 * 3.08292 * 17 16 15 20 20 N 1.34549 * 126.04676 * 352.25112 * 19 17 16 21 21 C 1.30869 * 107.26854 * 179.89684 * 20 19 17 22 22 N 1.34587 * 107.62561 * 0.37318 * 21 20 19 23 23 C 1.46493 * 125.74942 * 179.73597 * 22 21 20 24 24 C 1.52998 * 109.47755 * 75.01224 * 23 22 21 25 25 C 1.53008 * 109.47086 * 195.01133 * 23 22 21 26 26 C 1.53009 * 109.46921 * 315.00841 * 23 22 21 27 27 N 1.28851 * 108.50243 * 359.76220 * 22 21 20 28 28 C 1.46926 * 118.73770 * 53.60423 * 16 15 14 29 29 H 1.09004 * 109.47148 * 265.28245 * 1 2 3 30 30 H 1.08996 * 109.47470 * 25.28899 * 1 2 3 31 31 H 1.09003 * 109.47258 * 145.28803 * 1 2 3 32 32 H 0.97003 * 119.99416 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46033 * 298.70678 * 13 11 2 34 34 H 1.08992 * 109.46101 * 58.66368 * 13 11 2 35 35 H 1.09003 * 109.49470 * 181.31418 * 14 13 11 36 36 H 1.09001 * 109.49346 * 301.37950 * 14 13 11 37 37 H 1.08999 * 109.58619 * 65.15501 * 15 14 13 38 38 H 1.09004 * 109.58939 * 185.43301 * 15 14 13 39 39 H 1.07999 * 126.18992 * 180.12960 * 21 20 19 40 40 H 1.08994 * 109.47438 * 59.99989 * 24 23 22 41 41 H 1.08999 * 109.47512 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46487 * 299.99974 * 24 23 22 43 43 H 1.09003 * 109.46642 * 59.99663 * 25 23 22 44 44 H 1.08999 * 109.47111 * 179.97438 * 25 23 22 45 45 H 1.08994 * 109.47047 * 299.99362 * 25 23 22 46 46 H 1.09000 * 109.46990 * 60.00549 * 26 23 22 47 47 H 1.09003 * 109.46990 * 180.02562 * 26 23 22 48 48 H 1.08999 * 109.46658 * 300.00239 * 26 23 22 49 49 H 1.09006 * 109.58127 * 186.60259 * 28 16 15 50 50 H 1.09003 * 109.58121 * 66.18729 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1194 1.2497 -0.4711 5 6 1.5973 2.3061 0.6058 6 7 0.4868 2.1967 1.3038 7 14 2.4300 3.9691 0.4301 8 1 3.6546 3.8245 -0.3975 9 1 1.4988 4.9222 -0.2253 10 1 2.7990 4.4823 1.7739 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8283 -2.0712 -1.2502 14 6 2.6176 -3.3822 -1.2683 15 6 2.2497 -4.2122 -0.0344 16 7 2.4654 -3.3946 1.1671 17 6 3.2362 -3.8466 2.1760 18 8 3.3618 -3.1852 3.1882 19 6 3.9293 -5.1469 2.0517 20 7 3.7639 -6.0405 1.0595 21 6 4.5540 -7.0526 1.3126 22 7 5.1998 -6.7877 2.4633 23 6 6.1783 -7.6608 3.1162 24 6 7.5034 -7.6019 2.3536 25 6 6.3977 -7.1935 4.5566 26 6 5.6558 -9.0989 3.1205 27 7 4.8119 -5.6370 2.8943 28 6 1.8249 -2.0747 1.2477 29 1 -0.3634 -0.0845 1.0242 30 1 -0.3634 0.9291 -0.4390 31 1 -0.3634 -0.8448 -0.5852 32 1 0.1007 2.9796 1.7267 33 1 0.7606 -2.2904 -1.2387 34 1 2.0697 -1.4896 -2.1398 35 1 2.3716 -3.9426 -2.1703 36 1 3.6855 -3.1641 -1.2554 37 1 1.2022 -4.5079 -0.0920 38 1 2.8785 -5.1016 0.0085 39 1 4.6647 -7.9416 0.7094 40 1 7.8757 -6.5775 2.3505 41 1 8.2313 -8.2519 2.8391 42 1 7.3470 -7.9348 1.3275 43 1 5.4537 -7.2355 5.0999 44 1 7.1255 -7.8434 5.0425 45 1 6.7700 -6.1691 4.5535 46 1 5.4996 -9.4317 2.0944 47 1 6.3837 -9.7484 3.6067 48 1 4.7118 -9.1407 3.6639 49 1 2.1751 -1.5525 2.1381 50 1 0.7427 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027576679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:53 Heat of formation + Delta-G solvation = 94.604206 kcal Electronic energy + Delta-G solvation = -30051.845258 eV Core-core repulsion = 26117.619716 eV Total energy + Delta-G solvation = -3934.225542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.67717 -39.61227 -37.72318 -37.16092 -34.97340 -32.97934 -32.07357 -31.23098 -31.00282 -28.69672 -28.11789 -27.97562 -25.92367 -25.72170 -24.07025 -23.11475 -22.94390 -21.44850 -20.41147 -19.83719 -18.59511 -17.38845 -16.76986 -16.71012 -16.51475 -15.94292 -15.07848 -14.88624 -14.67534 -14.59430 -14.25090 -14.05024 -13.78139 -13.54385 -13.35574 -13.05780 -13.01491 -12.89319 -12.56578 -12.52072 -12.37712 -12.29172 -11.99487 -11.87000 -11.76749 -11.53806 -11.11379 -10.92045 -10.74318 -10.70460 -10.57801 -10.29915 -10.23921 -10.07396 -9.92751 -9.88290 -9.63757 -9.60751 -9.31342 -8.47538 -8.15512 -6.57029 -5.68637 -3.19019 1.40154 1.90739 2.02178 3.15976 3.43101 3.49916 3.52216 3.57200 3.81556 3.99754 4.07757 4.18519 4.47228 4.55034 4.65195 4.81756 4.94873 5.00914 5.07197 5.15209 5.24587 5.31215 5.35293 5.44046 5.47803 5.54074 5.61925 5.65636 5.77980 5.82988 5.89681 6.02652 6.09153 6.19055 6.27451 6.34417 6.40809 6.53630 6.63177 6.73010 6.88479 6.96682 7.07456 7.16990 7.43433 7.72148 7.76343 7.88508 7.96863 8.47591 8.53654 9.31371 9.91910 10.45207 11.37564 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002638 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.255037 B =10610.938679 C =11214.785571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.589 5.589 3 C -0.257 4.257 4 H 0.065 0.935 5 C 0.007 3.993 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.126 4.126 15 C 0.064 3.936 16 N -0.582 5.582 17 C 0.604 3.396 18 O -0.523 6.523 19 C 0.155 3.845 20 N -0.480 5.480 21 C 0.185 3.815 22 N -0.294 5.294 23 C 0.167 3.833 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.160 4.160 27 N -0.249 5.249 28 C 0.100 3.900 29 H 0.019 0.981 30 H 0.052 0.948 31 H -0.003 1.003 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.147 0.853 39 H 0.220 0.780 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.091 0.909 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 -27.615 -0.557 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.311 5.311 3 C -0.387 4.387 4 H 0.083 0.917 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.165 4.165 15 C -0.059 4.059 16 N -0.315 5.315 17 C 0.387 3.613 18 O -0.397 6.397 19 C -0.125 4.125 20 N -0.206 5.206 21 C -0.109 4.109 22 N -0.090 5.090 23 C 0.085 3.915 24 C -0.218 4.218 25 C -0.207 4.207 26 C -0.218 4.218 27 N -0.086 5.086 28 C -0.023 4.023 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.163 0.837 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.084 -26.694 0.407 28.907 hybrid contribution 0.327 0.637 -0.216 0.748 sum 11.411 -26.057 0.190 28.447 Atomic orbital electron populations 1.20756 0.82911 0.97174 0.97605 1.43863 1.01679 1.00008 1.85554 1.19217 1.02888 0.86850 1.29696 0.91680 1.25228 0.97920 0.99071 0.96969 1.70036 1.20824 1.28572 1.35266 0.86188 0.78902 0.84124 0.77353 1.20258 1.21647 1.21597 1.20668 0.96467 0.86206 0.90684 0.91790 1.22085 0.99714 0.95315 1.00236 1.21853 1.00509 0.96921 0.97234 1.22932 1.03008 0.96620 0.83343 1.48018 1.47186 1.19005 1.17306 1.16429 0.79163 0.81872 0.83832 1.90832 1.62907 1.56686 1.29228 1.23952 0.99489 0.98223 0.90802 1.70863 1.22687 1.02099 1.24925 1.26484 0.93608 1.00894 0.89926 1.47753 1.30600 1.13065 1.17582 1.21162 0.86852 0.88726 0.94797 1.22267 0.94782 1.04134 1.00635 1.22003 1.03445 1.03270 0.91987 1.22262 1.02992 0.92811 1.03715 1.74333 1.14015 0.96520 1.23750 1.22602 0.96804 0.80382 1.02523 0.96293 0.92899 0.98465 0.93715 0.92357 0.92025 0.91553 0.92266 0.92320 0.83685 0.76340 0.91132 0.89618 0.91333 0.91214 0.90357 0.90411 0.91123 0.89352 0.91119 0.89023 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 7.98 59.84 0.48 4.50 16 2 N -0.59 -15.28 2.79 -173.35 -0.48 -15.76 16 3 C -0.26 -7.30 9.50 -15.06 -0.14 -7.44 16 4 H 0.07 1.83 7.84 -52.48 -0.41 1.42 16 5 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 6 N -0.90 -27.07 10.93 55.49 0.61 -26.46 16 7 Si 0.90 22.53 29.56 -169.99 -5.02 17.51 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 C 0.17 3.71 2.75 -67.81 -0.19 3.52 16 12 H 0.06 1.49 7.89 -51.93 -0.41 1.08 16 13 C -0.13 -2.42 5.11 -26.69 -0.14 -2.56 16 14 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 15 C 0.06 0.96 6.29 -3.71 -0.02 0.94 16 16 N -0.58 -10.84 2.97 -173.87 -0.52 -11.36 16 17 C 0.60 11.92 7.71 -12.32 -0.09 11.82 16 18 O -0.52 -12.22 16.51 5.31 0.09 -12.13 16 19 C 0.16 2.52 7.72 -156.35 -1.21 1.32 16 20 N -0.48 -6.17 7.72 -12.36 -0.10 -6.27 16 21 C 0.19 1.65 11.71 -90.48 -1.06 0.59 16 22 N -0.29 -2.91 3.17 -49.83 -0.16 -3.07 16 23 C 0.17 0.99 1.23 -131.81 -0.16 0.83 16 24 C -0.16 -0.70 8.72 37.16 0.32 -0.38 16 25 C -0.15 -1.00 8.04 37.16 0.30 -0.70 16 26 C -0.16 -0.51 8.28 37.16 0.31 -0.20 16 27 N -0.25 -3.68 11.10 32.07 0.36 -3.32 16 28 C 0.10 2.15 5.78 -3.71 -0.02 2.12 16 29 H 0.02 0.51 7.77 -51.93 -0.40 0.10 16 30 H 0.05 1.43 7.04 -51.93 -0.37 1.06 16 31 H 0.00 -0.07 6.48 -51.93 -0.34 -0.40 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 1.05 6.75 -51.93 -0.35 0.70 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.15 2.04 3.69 -79.13 -0.29 1.75 16 39 H 0.22 0.82 7.53 -52.49 -0.40 0.43 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 46 H 0.07 0.12 7.34 -51.93 -0.38 -0.26 16 47 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.09 2.27 7.02 -51.93 -0.36 1.90 16 50 H 0.06 1.37 7.51 -51.93 -0.39 0.98 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -35.76 390.84 -9.52 -45.28 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.30 Total: -2.76 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -1.88 Total: 12.46 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -0.29 Total: -66.24 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.76 -9.52 -45.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027576679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.880 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds