Wall clock time and date at job start Tue Mar 31 2020 18:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36935 * 119.99852 * 2 1 4 4 H 1.08005 * 120.00387 * 210.24700 * 3 2 1 5 5 C 1.38814 * 119.99832 * 30.25800 * 3 2 1 6 6 N 1.31618 * 119.99907 * 7.35298 * 5 3 2 7 7 Si 1.86802 * 120.00024 * 187.36141 * 5 3 2 8 8 H 1.48508 * 109.46993 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47423 * 119.99575 * 7 5 3 10 10 H 1.48503 * 109.47070 * 239.99761 * 7 5 3 11 11 C 1.46499 * 120.00440 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.50309 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49942 * 59.99689 * 11 2 1 14 14 C 1.53043 * 109.53840 * 178.68988 * 13 11 2 15 15 C 1.53190 * 109.31399 * 61.36229 * 14 13 11 16 16 N 1.46925 * 108.77767 * 305.36730 * 15 14 13 17 17 C 1.34779 * 120.62813 * 233.60957 * 16 15 14 18 18 O 1.21561 * 119.99534 * 183.07616 * 17 16 15 19 19 C 1.47866 * 120.00274 * 3.08292 * 17 16 15 20 20 N 1.34549 * 126.04676 * 352.25112 * 19 17 16 21 21 C 1.30869 * 107.26854 * 179.89684 * 20 19 17 22 22 N 1.34587 * 107.62561 * 0.37318 * 21 20 19 23 23 C 1.46493 * 125.74942 * 179.73597 * 22 21 20 24 24 C 1.52998 * 109.47755 * 75.01224 * 23 22 21 25 25 C 1.53008 * 109.47086 * 195.01133 * 23 22 21 26 26 C 1.53009 * 109.46921 * 315.00841 * 23 22 21 27 27 N 1.28851 * 108.50243 * 359.76220 * 22 21 20 28 28 C 1.46926 * 118.73770 * 53.60423 * 16 15 14 29 29 H 1.09004 * 109.47148 * 265.28245 * 1 2 3 30 30 H 1.08996 * 109.47470 * 25.28899 * 1 2 3 31 31 H 1.09003 * 109.47258 * 145.28803 * 1 2 3 32 32 H 0.97003 * 119.99416 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46033 * 298.70678 * 13 11 2 34 34 H 1.08992 * 109.46101 * 58.66368 * 13 11 2 35 35 H 1.09003 * 109.49470 * 181.31418 * 14 13 11 36 36 H 1.09001 * 109.49346 * 301.37950 * 14 13 11 37 37 H 1.08999 * 109.58619 * 65.15501 * 15 14 13 38 38 H 1.09004 * 109.58939 * 185.43301 * 15 14 13 39 39 H 1.07999 * 126.18992 * 180.12960 * 21 20 19 40 40 H 1.08994 * 109.47438 * 59.99989 * 24 23 22 41 41 H 1.08999 * 109.47512 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46487 * 299.99974 * 24 23 22 43 43 H 1.09003 * 109.46642 * 59.99663 * 25 23 22 44 44 H 1.08999 * 109.47111 * 179.97438 * 25 23 22 45 45 H 1.08994 * 109.47047 * 299.99362 * 25 23 22 46 46 H 1.09000 * 109.46990 * 60.00549 * 26 23 22 47 47 H 1.09003 * 109.46990 * 180.02562 * 26 23 22 48 48 H 1.08999 * 109.46658 * 300.00239 * 26 23 22 49 49 H 1.09006 * 109.58127 * 186.60259 * 28 16 15 50 50 H 1.09003 * 109.58121 * 66.18729 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1194 1.2497 -0.4711 5 6 1.5973 2.3061 0.6058 6 7 0.4868 2.1967 1.3038 7 14 2.4300 3.9691 0.4301 8 1 3.6546 3.8245 -0.3975 9 1 1.4988 4.9222 -0.2253 10 1 2.7990 4.4823 1.7739 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8283 -2.0712 -1.2502 14 6 2.6176 -3.3822 -1.2683 15 6 2.2497 -4.2122 -0.0344 16 7 2.4654 -3.3946 1.1671 17 6 3.2362 -3.8466 2.1760 18 8 3.3618 -3.1852 3.1882 19 6 3.9293 -5.1469 2.0517 20 7 3.7639 -6.0405 1.0595 21 6 4.5540 -7.0526 1.3126 22 7 5.1998 -6.7877 2.4633 23 6 6.1783 -7.6608 3.1162 24 6 7.5034 -7.6019 2.3536 25 6 6.3977 -7.1935 4.5566 26 6 5.6558 -9.0989 3.1205 27 7 4.8119 -5.6370 2.8943 28 6 1.8249 -2.0747 1.2477 29 1 -0.3634 -0.0845 1.0242 30 1 -0.3634 0.9291 -0.4390 31 1 -0.3634 -0.8448 -0.5852 32 1 0.1007 2.9796 1.7267 33 1 0.7606 -2.2904 -1.2387 34 1 2.0697 -1.4896 -2.1398 35 1 2.3716 -3.9426 -2.1703 36 1 3.6855 -3.1641 -1.2554 37 1 1.2022 -4.5079 -0.0920 38 1 2.8785 -5.1016 0.0085 39 1 4.6647 -7.9416 0.7094 40 1 7.8757 -6.5775 2.3505 41 1 8.2313 -8.2519 2.8391 42 1 7.3470 -7.9348 1.3275 43 1 5.4537 -7.2355 5.0999 44 1 7.1255 -7.8434 5.0425 45 1 6.7700 -6.1691 4.5535 46 1 5.4996 -9.4317 2.0944 47 1 6.3837 -9.7484 3.6067 48 1 4.7118 -9.1407 3.6639 49 1 2.1751 -1.5525 2.1381 50 1 0.7427 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027576679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:52 Heat of formation + Delta-G solvation = 72.502201 kcal Electronic energy + Delta-G solvation = -30052.803673 eV Core-core repulsion = 26117.619716 eV Total energy + Delta-G solvation = -3935.183957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.59695 -41.12725 -38.93825 -38.22036 -36.79742 -34.24363 -33.50165 -32.83801 -32.11463 -30.44021 -28.49359 -28.37449 -28.03690 -27.10723 -25.55288 -24.49857 -24.00306 -22.99478 -21.31745 -21.10488 -20.12108 -18.85375 -18.32309 -17.79069 -17.62534 -17.14718 -16.95343 -16.14165 -15.95055 -15.61058 -15.36808 -15.27256 -15.02183 -14.91161 -14.81485 -14.39905 -14.17023 -13.97266 -13.60647 -13.54502 -13.28356 -13.22678 -13.12165 -12.87939 -12.80730 -12.74609 -12.49576 -12.38434 -12.25683 -12.17436 -12.12587 -11.97235 -11.90141 -11.73059 -11.45881 -11.45082 -11.37918 -10.66450 -10.59770 -10.50584 -9.72974 -8.68340 -7.88335 -5.42157 0.30780 1.08265 1.15232 1.42626 1.44444 1.55027 1.85259 2.20739 2.47892 2.96616 3.24599 3.27789 3.62714 3.67796 3.70222 3.79513 3.87910 3.99113 4.09666 4.23891 4.34365 4.37327 4.51707 4.59879 4.61570 4.66295 4.70376 4.71261 4.80011 4.81235 4.81939 4.84526 4.96871 5.02560 5.08312 5.13392 5.14793 5.22209 5.24489 5.25933 5.37231 5.44643 5.54106 5.56074 5.61239 5.66398 5.95080 6.29383 6.35107 6.84596 7.10487 7.13705 7.81962 8.29449 9.16056 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002638 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.255037 B =10610.938679 C =11214.785571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.606 5.606 3 C -0.269 4.269 4 H 0.064 0.936 5 C -0.048 4.048 6 N -0.935 5.935 7 Si 0.971 3.029 8 H -0.266 1.266 9 H -0.284 1.284 10 H -0.294 1.294 11 C 0.169 3.831 12 H 0.042 0.958 13 C -0.122 4.122 14 C -0.116 4.116 15 C 0.061 3.939 16 N -0.580 5.580 17 C 0.597 3.403 18 O -0.578 6.578 19 C 0.128 3.872 20 N -0.492 5.492 21 C 0.207 3.793 22 N -0.286 5.286 23 C 0.157 3.843 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.155 4.155 27 N -0.275 5.275 28 C 0.115 3.885 29 H -0.008 1.008 30 H 0.028 0.972 31 H 0.033 0.967 32 H 0.250 0.750 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.166 0.834 39 H 0.279 0.721 40 H 0.043 0.957 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.738 -31.733 -2.937 34.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.328 5.328 3 C -0.399 4.399 4 H 0.081 0.919 5 C -0.244 4.244 6 N -0.580 5.580 7 Si 0.799 3.201 8 H -0.190 1.190 9 H -0.210 1.210 10 H -0.221 1.221 11 C 0.061 3.939 12 H 0.061 0.939 13 C -0.161 4.161 14 C -0.154 4.154 15 C -0.060 4.060 16 N -0.312 5.312 17 C 0.382 3.618 18 O -0.456 6.456 19 C -0.151 4.151 20 N -0.218 5.218 21 C -0.086 4.086 22 N -0.082 5.082 23 C 0.077 3.923 24 C -0.214 4.214 25 C -0.208 4.208 26 C -0.212 4.212 27 N -0.115 5.115 28 C -0.010 4.010 29 H 0.010 0.990 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.182 0.818 39 H 0.294 0.706 40 H 0.062 0.938 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.129 0.871 45 H 0.066 0.934 46 H 0.114 0.886 47 H 0.132 0.868 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.688 -30.877 -2.019 33.443 hybrid contribution -0.050 1.729 0.584 1.825 sum 12.637 -29.148 -1.434 31.802 Atomic orbital electron populations 1.20501 0.82692 0.97270 0.96322 1.44083 1.02080 1.00816 1.85869 1.19510 1.02919 0.88175 1.29339 0.91864 1.26017 0.98712 1.02640 0.96995 1.70198 1.22190 1.29249 1.36358 0.85154 0.78290 0.79687 0.77016 1.19030 1.21040 1.22074 1.20770 0.94843 0.85410 0.92853 0.93946 1.21932 1.00595 0.96291 0.97314 1.21826 0.99562 0.95278 0.98748 1.23276 1.04374 0.96709 0.81624 1.48042 1.46608 1.18056 1.18510 1.16941 0.78794 0.82988 0.83059 1.90783 1.64749 1.58764 1.31301 1.23140 1.01131 0.97799 0.93019 1.70606 1.24258 1.02579 1.24386 1.27478 0.90963 1.00955 0.89172 1.48177 1.30445 1.11747 1.17868 1.21686 0.87122 0.89569 0.93950 1.22292 0.94049 1.03231 1.01816 1.22028 1.03152 1.02397 0.93252 1.22311 1.02914 0.90517 1.05508 1.74254 1.14101 0.98700 1.24463 1.22113 0.96574 0.81944 1.00326 0.98996 0.95331 0.94875 0.94078 0.91708 0.92182 0.87406 0.92781 0.90969 0.81830 0.70560 0.93822 0.86855 0.89483 0.93167 0.87122 0.93405 0.88609 0.86826 0.92459 0.93626 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 7.98 127.77 1.02 10.17 16 2 N -0.61 -32.47 2.79 -702.36 -1.96 -34.43 16 3 C -0.27 -15.79 9.50 84.03 0.80 -14.99 16 4 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 5 C -0.05 -2.83 5.13 84.86 0.44 -2.40 16 6 N -0.93 -58.20 10.93 21.65 0.24 -57.96 16 7 Si 0.97 47.54 29.56 68.60 2.03 49.56 16 8 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 9 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 11 C 0.17 7.65 2.75 45.07 0.12 7.78 16 12 H 0.04 2.07 7.89 -2.39 -0.02 2.05 16 13 C -0.12 -4.25 5.11 30.62 0.16 -4.09 16 14 C -0.12 -3.12 6.08 30.67 0.19 -2.93 16 15 C 0.06 1.73 6.29 86.36 0.54 2.27 16 16 N -0.58 -22.22 2.97 -822.27 -2.44 -24.66 16 17 C 0.60 24.81 7.71 86.79 0.67 25.48 16 18 O -0.58 -29.36 16.51 -3.91 -0.06 -29.43 16 19 C 0.13 4.18 7.72 137.13 1.06 5.24 16 20 N -0.49 -11.52 7.72 -193.03 -1.49 -13.01 16 21 C 0.21 2.90 11.71 180.30 2.11 5.01 16 22 N -0.29 -5.10 3.17 -311.57 -0.99 -6.08 16 23 C 0.16 1.44 1.23 3.61 0.00 1.44 16 24 C -0.16 -0.83 8.72 71.98 0.63 -0.20 16 25 C -0.15 -1.91 8.04 71.98 0.58 -1.33 16 26 C -0.15 -0.28 8.28 71.99 0.60 0.31 16 27 N -0.28 -8.25 11.10 -52.44 -0.58 -8.83 16 28 C 0.12 5.21 5.78 86.36 0.50 5.71 16 29 H -0.01 -0.47 7.77 -2.39 -0.02 -0.49 16 30 H 0.03 1.58 7.04 -2.39 -0.02 1.56 16 31 H 0.03 1.45 6.48 -2.39 -0.02 1.43 16 32 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.06 2.18 6.75 -2.39 -0.02 2.17 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.17 4.18 3.69 -56.10 -0.21 3.98 16 39 H 0.28 0.19 7.53 -2.91 -0.02 0.17 16 40 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.05 0.89 8.02 -2.39 -0.02 0.87 16 46 H 0.10 -0.27 7.34 -2.39 -0.02 -0.29 16 47 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 48 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.05 2.46 7.02 -2.38 -0.02 2.44 16 50 H 0.06 2.82 7.51 -2.39 -0.02 2.80 16 Total: -1.00 -86.41 390.84 4.87 -81.53 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.73 Total: 5.84 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 9.41 Total: 37.47 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -7.23 Total: -144.98 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -86.41 4.87 -81.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027576679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.035 kcal (2) G-P(sol) polarization free energy of solvation -86.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds