Wall clock time and date at job start Tue Mar 31 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 120.00237 * 2 1 4 4 H 1.08002 * 119.99969 * 204.33596 * 3 2 1 5 5 C 1.38810 * 120.00010 * 24.33143 * 3 2 1 6 6 N 1.31619 * 119.99862 * 11.22222 * 5 3 2 7 7 Si 1.86804 * 120.00143 * 191.21513 * 5 3 2 8 8 H 1.48502 * 109.46938 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46896 * 120.00211 * 7 5 3 10 10 H 1.48501 * 109.46917 * 240.00552 * 7 5 3 11 11 C 1.46507 * 119.99879 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.52341 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49888 * 300.16100 * 11 2 1 14 14 C 1.53042 * 109.53489 * 181.31311 * 13 11 2 15 15 C 1.53623 * 109.24522 * 298.50984 * 14 13 11 16 16 N 1.46931 * 108.54026 * 54.85777 * 15 14 13 17 17 C 1.34775 * 120.62664 * 126.36748 * 16 15 14 18 18 O 1.21561 * 119.99861 * 187.02946 * 17 16 15 19 19 C 1.47866 * 120.00265 * 7.02583 * 17 16 15 20 20 N 1.34551 * 126.04771 * 7.70436 * 19 17 16 21 21 C 1.30871 * 107.26688 * 179.97438 * 20 19 17 22 22 N 1.34581 * 107.62949 * 0.02562 * 21 20 19 23 23 C 1.46499 * 125.74986 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47235 * 75.00383 * 23 22 21 25 25 C 1.53001 * 109.46869 * 195.00159 * 23 22 21 26 26 C 1.52995 * 109.47040 * 315.00109 * 23 22 21 27 27 N 1.28850 * 108.50206 * 0.02562 * 22 21 20 28 28 C 1.46924 * 118.74048 * 306.09375 * 16 15 14 29 29 H 1.09006 * 109.47022 * 267.02203 * 1 2 3 30 30 H 1.09005 * 109.47101 * 27.01823 * 1 2 3 31 31 H 1.08994 * 109.47573 * 147.02408 * 1 2 3 32 32 H 0.97000 * 119.99910 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.45981 * 301.33779 * 13 11 2 34 34 H 1.09004 * 109.45744 * 61.29469 * 13 11 2 35 35 H 1.08997 * 109.49659 * 58.58956 * 14 13 11 36 36 H 1.09003 * 109.49431 * 178.68119 * 14 13 11 37 37 H 1.08994 * 109.74107 * 295.12255 * 15 14 13 38 38 H 1.09001 * 109.66098 * 174.54883 * 15 14 13 39 39 H 1.08001 * 126.18864 * 180.02562 * 21 20 19 40 40 H 1.09008 * 109.47047 * 59.99641 * 24 23 22 41 41 H 1.08993 * 109.47664 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46899 * 300.00330 * 24 23 22 43 43 H 1.09000 * 109.47322 * 60.00240 * 25 23 22 44 44 H 1.09007 * 109.46918 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.47298 * 299.99829 * 25 23 22 46 46 H 1.09002 * 109.47162 * 60.00247 * 26 23 22 47 47 H 1.09006 * 109.46850 * 180.02562 * 26 23 22 48 48 H 1.09000 * 109.47300 * 299.99851 * 26 23 22 49 49 H 1.08992 * 109.58945 * 173.64741 * 28 16 15 50 50 H 1.09000 * 109.58845 * 293.93352 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1577 1.2274 -0.3854 5 6 1.5481 2.3346 0.4953 6 7 0.4168 2.2497 1.1626 7 14 2.3444 4.0011 0.2150 8 1 3.6002 3.8259 -0.5580 9 1 1.4132 4.8729 -0.5453 10 1 2.6524 4.6291 1.5249 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0706 0.0009 13 6 1.8252 -2.0730 1.2482 14 6 2.6144 -3.3841 1.2664 15 6 2.2449 -4.2148 0.0281 16 7 2.4680 -3.3931 -1.1694 17 6 3.2409 -3.8439 -2.1773 18 8 3.5226 -3.1083 -3.1031 19 6 3.7463 -5.2334 -2.1568 20 7 3.3967 -6.1903 -1.2779 21 6 4.0600 -7.2723 -1.5973 22 7 4.8180 -6.9835 -2.6712 23 6 5.7200 -7.9123 -3.3568 24 6 4.8995 -8.8954 -4.1941 25 6 6.6624 -7.1266 -4.2709 26 6 6.5400 -8.6846 -2.3216 27 7 4.6177 -5.7523 -2.9940 28 6 1.8278 -2.0731 -1.2498 29 1 -0.3633 -0.0534 1.0263 30 1 -0.3633 0.9155 -0.4669 31 1 -0.3634 -0.8620 -0.5593 32 1 -0.0033 3.0524 1.5090 33 1 2.0645 -1.4926 2.1392 34 1 0.7574 -2.2921 1.2338 35 1 3.6823 -3.1660 1.2558 36 1 2.3663 -3.9457 2.1670 37 1 1.1962 -4.5070 0.0804 38 1 2.8726 -5.1047 -0.0173 39 1 4.0084 -8.2247 -1.0907 40 1 4.3152 -8.3451 -4.9317 41 1 5.5706 -9.5861 -4.7046 42 1 4.2281 -9.4551 -3.5429 43 1 7.2469 -6.4261 -3.6745 44 1 7.3332 -7.8176 -4.7815 45 1 6.0781 -6.5763 -5.0085 46 1 5.8687 -9.2443 -1.6703 47 1 7.2115 -9.3753 -2.8318 48 1 7.1246 -7.9841 -1.7251 49 1 2.1801 -1.5496 -2.1384 50 1 0.7458 -2.1944 -1.3020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027576680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:57 Heat of formation + Delta-G solvation = 94.690640 kcal Electronic energy + Delta-G solvation = -29955.958047 eV Core-core repulsion = 26021.736252 eV Total energy + Delta-G solvation = -3934.221794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.69767 -39.68023 -37.74923 -37.19212 -35.00775 -32.98625 -32.07960 -31.27420 -31.03126 -28.68848 -28.13757 -27.99949 -25.97204 -25.72948 -24.05814 -23.14254 -22.99524 -21.44270 -20.43340 -19.86112 -18.64245 -17.41270 -16.81469 -16.72149 -16.52316 -16.01158 -15.18423 -14.87346 -14.70675 -14.58976 -14.29578 -13.98580 -13.79370 -13.55054 -13.36058 -13.08812 -13.02088 -12.89798 -12.60418 -12.49327 -12.42007 -12.36880 -12.04113 -11.92175 -11.82712 -11.52996 -11.03364 -10.87692 -10.77624 -10.69673 -10.58871 -10.35969 -10.16865 -10.05476 -10.01080 -9.82520 -9.70718 -9.66714 -9.43122 -8.51014 -8.20723 -6.64982 -5.67049 -3.12205 1.36211 1.88359 1.98893 3.10273 3.43680 3.49182 3.50907 3.54281 3.79400 3.97432 4.05740 4.16302 4.44315 4.56226 4.61589 4.79984 4.93058 4.98482 5.04474 5.12925 5.22239 5.28929 5.33266 5.45229 5.48863 5.51263 5.59116 5.64833 5.74612 5.80286 5.88043 5.96446 6.05066 6.17937 6.24972 6.32582 6.37169 6.49322 6.61082 6.65286 6.82299 6.94892 7.07557 7.13589 7.46629 7.64911 7.77619 7.89601 7.92004 8.39664 8.50024 9.31389 9.93563 10.43238 11.39323 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.002495 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.572498 B =11217.858776 C =11760.695473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.251 4.251 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.082 3.918 16 N -0.583 5.583 17 C 0.607 3.393 18 O -0.524 6.524 19 C 0.152 3.848 20 N -0.479 5.479 21 C 0.184 3.816 22 N -0.294 5.294 23 C 0.167 3.833 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.160 4.160 27 N -0.249 5.249 28 C 0.098 3.902 29 H 0.020 0.980 30 H 0.055 0.945 31 H -0.005 1.005 32 H 0.251 0.749 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.220 0.780 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.710 -28.623 -5.731 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.061 3.939 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.169 4.169 15 C -0.041 4.041 16 N -0.316 5.316 17 C 0.390 3.610 18 O -0.398 6.398 19 C -0.128 4.128 20 N -0.205 5.205 21 C -0.110 4.110 22 N -0.090 5.090 23 C 0.085 3.915 24 C -0.218 4.218 25 C -0.207 4.207 26 C -0.218 4.218 27 N -0.086 5.086 28 C -0.025 4.025 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.803 -27.623 -6.443 30.010 hybrid contribution 0.232 0.553 0.234 0.644 sum 10.035 -27.070 -6.210 29.530 Atomic orbital electron populations 1.20777 0.82680 0.96945 0.97902 1.43891 1.01812 1.00032 1.85656 1.19297 0.99065 0.85641 1.34032 0.91397 1.25033 0.97932 0.98577 0.98131 1.70075 1.19247 1.27232 1.38798 0.86175 0.78734 0.84289 0.77335 1.20268 1.21651 1.21800 1.20581 0.96452 0.86211 0.90692 0.91693 1.22106 0.99477 0.94898 1.00675 1.22006 1.00627 0.97225 0.97076 1.22693 1.02771 0.95349 0.83241 1.47892 1.47427 1.18816 1.17463 1.16384 0.78999 0.82600 0.82997 1.90820 1.57680 1.55658 1.35604 1.23893 0.98884 0.97002 0.93036 1.71164 1.24899 0.99182 1.25264 1.26462 0.93105 1.00765 0.90689 1.47767 1.31309 1.07773 1.22176 1.21157 0.89019 0.87899 0.93452 1.22265 1.00652 0.98573 1.00294 1.22003 0.98716 1.00396 0.99586 1.22262 1.00361 1.00627 0.98558 1.74322 1.17472 0.93499 1.23346 1.22481 0.96825 0.80942 1.02276 0.96214 0.92624 0.98620 0.93870 0.91677 0.92507 0.92225 0.91486 0.91931 0.85289 0.76345 0.91200 0.89609 0.91341 0.91186 0.90351 0.90461 0.91114 0.89347 0.91072 0.89164 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 8.08 59.84 0.48 4.54 16 2 N -0.59 -15.31 2.81 -173.34 -0.49 -15.79 16 3 C -0.25 -7.13 9.57 -15.06 -0.14 -7.27 16 4 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 5 C 0.00 0.03 5.08 -17.43 -0.09 -0.05 16 6 N -0.91 -26.94 10.74 55.49 0.60 -26.34 16 7 Si 0.90 22.56 29.57 -169.99 -5.03 17.54 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.17 3.70 2.75 -67.80 -0.19 3.51 16 12 H 0.06 1.50 7.88 -51.93 -0.41 1.10 16 13 C -0.13 -2.50 5.14 -26.69 -0.14 -2.64 16 14 C -0.13 -1.98 6.10 -26.39 -0.16 -2.14 16 15 C 0.08 1.22 6.12 -3.48 -0.02 1.20 16 16 N -0.58 -10.40 2.97 -173.60 -0.51 -10.91 16 17 C 0.61 11.44 7.69 -12.32 -0.09 11.35 16 18 O -0.52 -11.61 16.52 5.31 0.09 -11.53 16 19 C 0.15 2.39 7.64 -156.35 -1.19 1.19 16 20 N -0.48 -6.05 7.88 -12.36 -0.10 -6.15 16 21 C 0.18 1.61 11.71 -90.48 -1.06 0.55 16 22 N -0.29 -2.82 3.17 -49.84 -0.16 -2.98 16 23 C 0.17 0.95 1.23 -131.82 -0.16 0.78 16 24 C -0.16 -0.64 8.72 37.16 0.32 -0.32 16 25 C -0.15 -0.95 8.04 37.16 0.30 -0.65 16 26 C -0.16 -0.48 8.28 37.16 0.31 -0.18 16 27 N -0.25 -3.56 11.10 32.07 0.36 -3.20 16 28 C 0.10 1.97 5.79 -3.71 -0.02 1.94 16 29 H 0.02 0.52 7.77 -51.93 -0.40 0.12 16 30 H 0.06 1.52 6.83 -51.93 -0.35 1.17 16 31 H 0.00 -0.10 6.35 -51.93 -0.33 -0.43 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.08 7.71 -51.93 -0.40 0.67 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.13 1.80 4.14 -59.97 -0.25 1.55 16 39 H 0.22 0.81 7.53 -52.49 -0.40 0.41 16 40 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 46 H 0.07 0.12 7.34 -51.93 -0.38 -0.26 16 47 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.09 2.00 7.00 -51.93 -0.36 1.64 16 50 H 0.07 1.31 6.49 -51.93 -0.34 0.98 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -35.37 390.77 -9.45 -44.82 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -8.24 Total: -3.15 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -1.86 Total: 11.82 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.31 Total: -65.38 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.37 -9.45 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027576680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.509 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds