Wall clock time and date at job start Tue Mar 31 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 120.00237 * 2 1 4 4 H 1.08002 * 119.99969 * 204.33596 * 3 2 1 5 5 C 1.38810 * 120.00010 * 24.33143 * 3 2 1 6 6 N 1.31619 * 119.99862 * 11.22222 * 5 3 2 7 7 Si 1.86804 * 120.00143 * 191.21513 * 5 3 2 8 8 H 1.48502 * 109.46938 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46896 * 120.00211 * 7 5 3 10 10 H 1.48501 * 109.46917 * 240.00552 * 7 5 3 11 11 C 1.46507 * 119.99879 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.52341 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49888 * 300.16100 * 11 2 1 14 14 C 1.53042 * 109.53489 * 181.31311 * 13 11 2 15 15 C 1.53623 * 109.24522 * 298.50984 * 14 13 11 16 16 N 1.46931 * 108.54026 * 54.85777 * 15 14 13 17 17 C 1.34775 * 120.62664 * 126.36748 * 16 15 14 18 18 O 1.21561 * 119.99861 * 187.02946 * 17 16 15 19 19 C 1.47866 * 120.00265 * 7.02583 * 17 16 15 20 20 N 1.34551 * 126.04771 * 7.70436 * 19 17 16 21 21 C 1.30871 * 107.26688 * 179.97438 * 20 19 17 22 22 N 1.34581 * 107.62949 * 0.02562 * 21 20 19 23 23 C 1.46499 * 125.74986 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47235 * 75.00383 * 23 22 21 25 25 C 1.53001 * 109.46869 * 195.00159 * 23 22 21 26 26 C 1.52995 * 109.47040 * 315.00109 * 23 22 21 27 27 N 1.28850 * 108.50206 * 0.02562 * 22 21 20 28 28 C 1.46924 * 118.74048 * 306.09375 * 16 15 14 29 29 H 1.09006 * 109.47022 * 267.02203 * 1 2 3 30 30 H 1.09005 * 109.47101 * 27.01823 * 1 2 3 31 31 H 1.08994 * 109.47573 * 147.02408 * 1 2 3 32 32 H 0.97000 * 119.99910 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.45981 * 301.33779 * 13 11 2 34 34 H 1.09004 * 109.45744 * 61.29469 * 13 11 2 35 35 H 1.08997 * 109.49659 * 58.58956 * 14 13 11 36 36 H 1.09003 * 109.49431 * 178.68119 * 14 13 11 37 37 H 1.08994 * 109.74107 * 295.12255 * 15 14 13 38 38 H 1.09001 * 109.66098 * 174.54883 * 15 14 13 39 39 H 1.08001 * 126.18864 * 180.02562 * 21 20 19 40 40 H 1.09008 * 109.47047 * 59.99641 * 24 23 22 41 41 H 1.08993 * 109.47664 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46899 * 300.00330 * 24 23 22 43 43 H 1.09000 * 109.47322 * 60.00240 * 25 23 22 44 44 H 1.09007 * 109.46918 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.47298 * 299.99829 * 25 23 22 46 46 H 1.09002 * 109.47162 * 60.00247 * 26 23 22 47 47 H 1.09006 * 109.46850 * 180.02562 * 26 23 22 48 48 H 1.09000 * 109.47300 * 299.99851 * 26 23 22 49 49 H 1.08992 * 109.58945 * 173.64741 * 28 16 15 50 50 H 1.09000 * 109.58845 * 293.93352 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1577 1.2274 -0.3854 5 6 1.5481 2.3346 0.4953 6 7 0.4168 2.2497 1.1626 7 14 2.3444 4.0011 0.2150 8 1 3.6002 3.8259 -0.5580 9 1 1.4132 4.8729 -0.5453 10 1 2.6524 4.6291 1.5249 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0706 0.0009 13 6 1.8252 -2.0730 1.2482 14 6 2.6144 -3.3841 1.2664 15 6 2.2449 -4.2148 0.0281 16 7 2.4680 -3.3931 -1.1694 17 6 3.2409 -3.8439 -2.1773 18 8 3.5226 -3.1083 -3.1031 19 6 3.7463 -5.2334 -2.1568 20 7 3.3967 -6.1903 -1.2779 21 6 4.0600 -7.2723 -1.5973 22 7 4.8180 -6.9835 -2.6712 23 6 5.7200 -7.9123 -3.3568 24 6 4.8995 -8.8954 -4.1941 25 6 6.6624 -7.1266 -4.2709 26 6 6.5400 -8.6846 -2.3216 27 7 4.6177 -5.7523 -2.9940 28 6 1.8278 -2.0731 -1.2498 29 1 -0.3633 -0.0534 1.0263 30 1 -0.3633 0.9155 -0.4669 31 1 -0.3634 -0.8620 -0.5593 32 1 -0.0033 3.0524 1.5090 33 1 2.0645 -1.4926 2.1392 34 1 0.7574 -2.2921 1.2338 35 1 3.6823 -3.1660 1.2558 36 1 2.3663 -3.9457 2.1670 37 1 1.1962 -4.5070 0.0804 38 1 2.8726 -5.1047 -0.0173 39 1 4.0084 -8.2247 -1.0907 40 1 4.3152 -8.3451 -4.9317 41 1 5.5706 -9.5861 -4.7046 42 1 4.2281 -9.4551 -3.5429 43 1 7.2469 -6.4261 -3.6745 44 1 7.3332 -7.8176 -4.7815 45 1 6.0781 -6.5763 -5.0085 46 1 5.8687 -9.2443 -1.6703 47 1 7.2115 -9.3753 -2.8318 48 1 7.1246 -7.9841 -1.7251 49 1 2.1801 -1.5496 -2.1384 50 1 0.7458 -2.1944 -1.3020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027576680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:56 Heat of formation + Delta-G solvation = 73.390854 kcal Electronic energy + Delta-G solvation = -29956.881675 eV Core-core repulsion = 26021.736252 eV Total energy + Delta-G solvation = -3935.145422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.57657 -41.13922 -38.93988 -38.20839 -36.81240 -34.22512 -33.47191 -32.88527 -32.09219 -30.41108 -28.48596 -28.37486 -28.05853 -27.10202 -25.53791 -24.50602 -23.98536 -23.00057 -21.31800 -21.08868 -20.14221 -18.84654 -18.31336 -17.78911 -17.62932 -17.21541 -16.89043 -16.19495 -15.88321 -15.59523 -15.40855 -15.23043 -15.01592 -14.88134 -14.80030 -14.47186 -14.07084 -13.95001 -13.68625 -13.57951 -13.28025 -13.22047 -13.06326 -12.90779 -12.77840 -12.74311 -12.50867 -12.38687 -12.30318 -12.14821 -11.97639 -11.94532 -11.89635 -11.79647 -11.46135 -11.43638 -11.40368 -10.71932 -10.63079 -10.56461 -9.75612 -8.74622 -7.86491 -5.34256 0.31199 1.09289 1.15699 1.43435 1.44820 1.55892 1.85088 2.20136 2.49272 2.97880 3.25245 3.27874 3.61898 3.67985 3.70412 3.79858 3.88365 3.97323 4.07596 4.19797 4.29355 4.36557 4.52829 4.60044 4.61935 4.64501 4.71158 4.72041 4.78319 4.80352 4.82471 4.86833 4.92162 5.00888 5.05773 5.12460 5.13612 5.20897 5.25027 5.28701 5.40409 5.43078 5.48308 5.53872 5.62175 5.69864 5.84872 6.27149 6.33102 6.83730 7.10800 7.13929 7.83683 8.27870 9.17946 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.002495 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.572498 B =11217.858776 C =11760.695473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.266 4.266 4 H 0.059 0.941 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.968 3.032 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.287 1.287 11 C 0.170 3.830 12 H 0.042 0.958 13 C -0.121 4.121 14 C -0.119 4.119 15 C 0.084 3.916 16 N -0.582 5.582 17 C 0.602 3.398 18 O -0.573 6.573 19 C 0.124 3.876 20 N -0.493 5.493 21 C 0.205 3.795 22 N -0.286 5.286 23 C 0.157 3.843 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.155 4.155 27 N -0.274 5.274 28 C 0.113 3.887 29 H 0.003 0.997 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.250 0.750 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.148 0.852 39 H 0.276 0.724 40 H 0.043 0.957 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -32.786 -4.974 34.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.331 5.331 3 C -0.396 4.396 4 H 0.077 0.923 5 C -0.243 4.243 6 N -0.580 5.580 7 Si 0.797 3.203 8 H -0.198 1.198 9 H -0.214 1.214 10 H -0.214 1.214 11 C 0.062 3.938 12 H 0.060 0.940 13 C -0.160 4.160 14 C -0.158 4.158 15 C -0.037 4.037 16 N -0.314 5.314 17 C 0.387 3.613 18 O -0.451 6.451 19 C -0.154 4.154 20 N -0.220 5.220 21 C -0.089 4.089 22 N -0.083 5.083 23 C 0.077 3.923 24 C -0.213 4.213 25 C -0.208 4.208 26 C -0.213 4.213 27 N -0.114 5.114 28 C -0.011 4.011 29 H 0.021 0.979 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.165 0.835 39 H 0.292 0.708 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.128 0.872 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.131 0.869 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.722 -31.849 -5.671 34.081 hybrid contribution 0.048 1.679 -0.078 1.681 sum 10.771 -30.171 -5.749 32.547 Atomic orbital electron populations 1.20518 0.82441 0.96760 0.96922 1.44073 1.02198 1.00819 1.86040 1.19496 0.99001 0.87186 1.33914 0.92294 1.25750 0.98639 1.01726 0.98175 1.70211 1.20318 1.27878 1.39575 0.85188 0.77922 0.80042 0.77187 1.19800 1.21418 1.21378 1.20659 0.94757 0.85445 0.92955 0.93963 1.21927 1.00277 0.96125 0.97713 1.21958 0.99518 0.95393 0.98926 1.22940 1.04144 0.95250 0.81387 1.47931 1.46976 1.18032 1.18474 1.16838 0.78323 0.83862 0.82259 1.90775 1.59456 1.57461 1.37369 1.23185 1.00841 0.96180 0.95239 1.70960 1.26144 0.99624 1.25257 1.27427 0.90632 1.01339 0.89478 1.48187 1.31196 1.06595 1.22275 1.21670 0.88868 0.87399 0.94376 1.22287 1.01008 0.98193 0.99856 1.22025 0.98916 1.00738 0.99113 1.22309 1.00573 1.00386 0.98045 1.74245 1.17504 0.95880 1.23800 1.22052 0.97102 0.82054 0.99929 0.97919 0.95442 0.95594 0.94068 0.93778 0.92104 0.92831 0.87891 0.90434 0.83506 0.70823 0.93729 0.86875 0.89620 0.93158 0.87180 0.93269 0.88719 0.86861 0.92458 0.92118 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 8.08 127.77 1.03 10.22 16 2 N -0.61 -32.56 2.81 -702.33 -1.97 -34.53 16 3 C -0.27 -15.65 9.57 84.03 0.80 -14.85 16 4 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 5 C -0.05 -2.79 5.08 84.86 0.43 -2.36 16 6 N -0.93 -56.68 10.74 21.65 0.23 -56.45 16 7 Si 0.97 47.45 29.57 68.60 2.03 49.48 16 8 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 C 0.17 7.64 2.75 45.07 0.12 7.76 16 12 H 0.04 2.06 7.88 -2.39 -0.02 2.04 16 13 C -0.12 -4.56 5.14 30.62 0.16 -4.40 16 14 C -0.12 -3.41 6.10 30.82 0.19 -3.22 16 15 C 0.08 2.34 6.12 86.51 0.53 2.87 16 16 N -0.58 -21.00 2.97 -821.44 -2.44 -23.43 16 17 C 0.60 23.48 7.69 86.79 0.67 24.15 16 18 O -0.57 -27.07 16.52 -3.91 -0.06 -27.13 16 19 C 0.12 3.88 7.64 137.12 1.05 4.93 16 20 N -0.49 -11.29 7.88 -193.03 -1.52 -12.81 16 21 C 0.20 2.80 11.71 180.30 2.11 4.91 16 22 N -0.29 -4.89 3.17 -311.60 -0.99 -5.88 16 23 C 0.16 1.34 1.23 3.60 0.00 1.35 16 24 C -0.16 -0.72 8.72 71.98 0.63 -0.09 16 25 C -0.15 -1.77 8.04 71.98 0.58 -1.20 16 26 C -0.16 -0.25 8.28 71.98 0.60 0.34 16 27 N -0.27 -7.85 11.10 -52.44 -0.58 -8.43 16 28 C 0.11 4.68 5.79 86.37 0.50 5.18 16 29 H 0.00 0.14 7.77 -2.38 -0.02 0.12 16 30 H 0.03 1.53 6.83 -2.38 -0.02 1.52 16 31 H 0.03 1.15 6.35 -2.39 -0.02 1.14 16 32 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 2.24 7.71 -2.38 -0.02 2.23 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.15 3.72 4.14 -18.26 -0.08 3.64 16 39 H 0.28 0.24 7.53 -2.91 -0.02 0.22 16 40 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 0.53 8.14 -2.38 -0.02 0.52 16 45 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 46 H 0.09 -0.26 7.34 -2.39 -0.02 -0.28 16 47 H 0.11 -0.31 8.14 -2.38 -0.02 -0.33 16 48 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.06 2.87 7.00 -2.39 -0.02 2.85 16 50 H 0.07 2.94 6.49 -2.39 -0.02 2.92 16 Total: -1.00 -83.32 390.77 4.96 -78.36 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 0.86 Total: 5.23 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 9.40 Total: 35.59 kcal Atomic # 7 Polarization: -134.26 SS G_CDS: -7.27 Total: -141.53 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -83.32 4.96 -78.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027576680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.753 kcal (2) G-P(sol) polarization free energy of solvation -83.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds