Wall clock time and date at job start Tue Mar 31 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.52995 * 109.47261 * 239.99977 * 2 1 3 5 5 N 1.46506 * 109.47371 * 119.99764 * 2 1 3 6 6 C 1.34816 * 126.59306 * 74.99813 * 5 2 1 7 7 C 1.36596 * 106.83807 * 180.02562 * 6 5 2 8 8 C 1.47514 * 125.77034 * 179.97438 * 7 6 5 9 9 O 1.21601 * 120.00000 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00375 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00379 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.32312 * 35.34685 * 11 10 8 13 13 C 1.47089 * 109.32638 * 155.00118 * 11 10 8 14 14 C 1.52572 * 114.20428 * 182.97041 * 13 11 10 15 15 C 1.51038 * 109.27671 * 274.77703 * 14 13 11 16 16 C 1.53943 * 109.96589 * 92.06770 * 15 14 13 17 17 N 1.47604 * 112.14560 * 319.41661 * 16 15 14 18 18 C 1.36934 * 118.64606 * 137.84587 * 17 16 15 19 19 H 1.07998 * 120.00569 * 206.53333 * 18 17 16 20 20 C 1.38818 * 119.99781 * 26.53350 * 18 17 16 21 21 N 1.31623 * 119.99809 * 15.66217 * 20 18 17 22 22 Si 1.86795 * 120.00190 * 195.66428 * 20 18 17 23 23 H 1.48499 * 109.47227 * 89.99694 * 22 20 18 24 24 H 1.48493 * 109.47610 * 210.00050 * 22 20 18 25 25 H 1.48504 * 109.46915 * 330.00013 * 22 20 18 26 26 C 1.44580 * 122.71378 * 317.87324 * 17 16 15 27 27 N 1.34400 * 108.45573 * 0.24120 * 7 6 5 28 28 N 1.28762 * 109.52866 * 359.58783 * 27 7 6 29 29 H 1.08999 * 109.47025 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.47149 * 60.00400 * 1 2 3 31 31 H 1.09006 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47402 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46721 * 299.99883 * 3 2 1 34 34 H 1.08996 * 109.47156 * 59.99708 * 3 2 1 35 35 H 1.09006 * 109.46908 * 299.99762 * 4 2 1 36 36 H 1.08998 * 109.47347 * 59.99744 * 4 2 1 37 37 H 1.09004 * 109.47691 * 179.97438 * 4 2 1 38 38 H 1.07996 * 126.57826 * 0.02562 * 6 5 2 39 39 H 0.97005 * 119.99520 * 359.97438 * 10 8 7 40 40 H 1.09003 * 108.51460 * 304.14264 * 13 11 10 41 41 H 1.08999 * 108.51779 * 61.79567 * 13 11 10 42 42 H 1.08994 * 109.48803 * 34.87407 * 14 13 11 43 43 H 1.09004 * 109.48914 * 154.94690 * 14 13 11 44 44 H 1.08998 * 109.44391 * 331.90595 * 15 14 13 45 45 H 1.08992 * 109.31329 * 212.14948 * 15 14 13 46 46 H 1.09008 * 108.94601 * 198.73113 * 16 15 14 47 47 H 1.08995 * 108.95089 * 80.10695 * 16 15 14 48 48 H 0.96997 * 119.99797 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.44903 * 330.68232 * 26 17 16 50 50 H 1.09000 * 109.45078 * 210.76607 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0216 1.4106 7 6 2.5629 -2.2214 2.6490 8 6 2.7638 -3.5291 3.3014 9 8 2.4358 -4.5507 2.7293 10 7 3.3110 -3.5915 4.5315 11 6 3.5101 -4.8902 5.1796 12 1 3.7734 -5.6327 4.4264 13 6 4.6014 -4.7828 6.1599 14 6 4.9516 -6.0964 6.8526 15 6 4.0363 -6.2948 8.0375 16 6 2.7981 -7.1063 7.6152 17 7 2.2913 -6.6990 6.2901 18 6 1.8948 -7.6717 5.4116 19 1 1.9312 -7.4864 4.3482 20 6 1.4460 -8.8959 5.8878 21 7 1.1077 -9.0260 7.1531 22 14 1.3222 -10.3588 4.7329 23 1 2.6052 -11.1064 4.7416 24 1 0.2252 -11.2531 5.1824 25 1 1.0377 -9.8800 3.3562 26 6 2.1967 -5.3155 5.8812 27 7 2.8754 -1.0247 3.1749 28 7 2.5712 -0.0942 2.3384 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6660 -2.7836 0.7332 39 1 3.5730 -2.7765 4.9877 40 1 5.4905 -4.4132 5.6490 41 1 4.3136 -4.0567 6.9202 42 1 4.8273 -6.9216 6.1514 43 1 5.9858 -6.0624 7.1952 44 1 3.7195 -5.3237 8.4179 45 1 4.5712 -6.8325 8.8202 46 1 2.0109 -6.9616 8.3551 47 1 3.0617 -8.1635 7.5837 48 1 0.7945 -9.8815 7.4860 49 1 2.0338 -4.6883 6.7577 50 1 1.3615 -5.1974 5.1908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034236898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:38 Heat of formation + Delta-G solvation = 75.738874 kcal Electronic energy + Delta-G solvation = -29754.026008 eV Core-core repulsion = 25818.982403 eV Total energy + Delta-G solvation = -3935.043604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34632 -39.40236 -37.80080 -37.37958 -34.48845 -33.15680 -32.17743 -31.22157 -30.72728 -29.67140 -28.05439 -27.97875 -25.96138 -24.51159 -23.86461 -23.46997 -22.46292 -20.83059 -20.06405 -19.70512 -19.06571 -17.67031 -16.53110 -16.39248 -16.20201 -15.91795 -14.99376 -14.88531 -14.72143 -14.54805 -14.47595 -13.97108 -13.80271 -13.45534 -13.15381 -13.07103 -12.95816 -12.82320 -12.56689 -12.43879 -12.40634 -12.30103 -12.01966 -11.93155 -11.61100 -11.46142 -11.27031 -10.98551 -10.85813 -10.70078 -10.49978 -10.46548 -10.05541 -10.04125 -9.71138 -9.64837 -9.55249 -9.49112 -9.31286 -8.69661 -8.24328 -6.55618 -5.67348 -3.10580 1.08108 1.79063 1.80422 3.43098 3.46659 3.52868 3.56841 3.58035 3.85199 4.09680 4.18011 4.21816 4.60773 4.69838 4.81036 4.88758 4.97022 5.06599 5.07083 5.10381 5.20039 5.25723 5.34230 5.43405 5.44914 5.54406 5.57136 5.60951 5.63627 5.80050 5.88048 6.09066 6.12123 6.25555 6.28682 6.40360 6.48071 6.67502 6.71598 6.81284 6.84396 6.91566 7.01790 7.20123 7.53278 7.76980 7.80508 7.99167 8.02564 8.56789 8.60226 9.35937 10.01343 10.45339 11.40333 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.002784 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.943276 B =10053.329923 C =11277.263505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 C -0.148 4.148 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.090 3.910 7 C -0.094 4.094 8 C 0.597 3.403 9 O -0.529 6.529 10 N -0.707 5.707 11 C 0.115 3.885 12 H 0.089 0.911 13 C -0.113 4.113 14 C -0.100 4.100 15 C -0.144 4.144 16 C 0.176 3.824 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.070 0.930 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.278 1.278 26 C 0.158 3.842 27 N -0.209 5.209 28 N -0.069 5.069 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.200 0.800 39 H 0.399 0.601 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.024 0.976 47 H 0.075 0.925 48 H 0.251 0.749 49 H 0.032 0.968 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 20.110 -13.436 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.140 5.140 6 C -0.066 4.066 7 C -0.233 4.233 8 C 0.379 3.621 9 O -0.405 6.405 10 N -0.356 5.356 11 C 0.009 3.991 12 H 0.107 0.893 13 C -0.151 4.151 14 C -0.138 4.138 15 C -0.183 4.183 16 C 0.051 3.949 17 N -0.305 5.305 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.552 5.552 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.028 3.972 27 N -0.082 5.082 28 N -0.048 5.048 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.217 0.783 39 H 0.233 0.767 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.042 0.958 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.282 20.548 -13.079 24.577 hybrid contribution -0.292 -1.236 -0.892 1.552 sum 2.990 19.311 -13.971 24.022 Atomic orbital electron populations 1.22296 0.91860 1.03866 1.03988 1.21069 0.95220 0.94045 0.80930 1.21988 1.02499 0.92310 1.03763 1.22304 1.02672 1.01437 0.95749 1.50781 1.42449 1.05255 1.15490 1.23263 0.98379 0.86820 0.98173 1.21672 1.12157 0.93928 0.95557 1.16747 0.78198 0.85565 0.81555 1.90868 1.50856 1.34152 1.64574 1.45973 1.62295 1.10622 1.16747 1.21300 0.99157 0.83088 0.95541 0.89303 1.20582 0.97424 0.98877 0.98213 1.20858 0.97350 0.97378 0.98222 1.22112 0.98825 1.00417 0.96929 1.21049 0.90478 0.97748 0.85579 1.43594 1.72298 0.99979 1.14601 1.19343 1.36482 0.93247 0.89174 0.91209 1.25016 0.98913 0.99373 0.96205 1.70085 1.47290 1.23923 1.13912 0.86311 0.77153 0.82890 0.80646 1.21544 1.21945 1.20330 1.20922 0.93465 0.86693 0.96116 1.74621 1.13207 0.98095 1.22317 1.81907 1.16034 1.17130 0.89748 0.91194 0.89691 0.91217 0.91265 0.90214 0.90630 0.90997 0.89454 0.91151 0.78279 0.76654 0.93324 0.92686 0.90447 0.93433 0.93622 0.92956 0.95788 0.90655 0.93848 0.95000 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.74 37.16 0.32 -0.53 16 2 C 0.17 1.09 1.25 -131.82 -0.16 0.92 16 3 C -0.15 -0.82 8.11 37.16 0.30 -0.52 16 4 C -0.16 -0.76 8.30 37.15 0.31 -0.46 16 5 N -0.35 -3.60 3.44 -48.35 -0.17 -3.77 16 6 C 0.09 1.05 10.43 -16.83 -0.18 0.87 16 7 C -0.09 -1.37 6.99 -83.56 -0.58 -1.95 16 8 C 0.60 10.38 7.74 -12.48 -0.10 10.29 16 9 O -0.53 -11.04 16.53 5.28 0.09 -10.95 16 10 N -0.71 -11.63 5.05 -56.68 -0.29 -11.92 16 11 C 0.12 2.17 2.33 -69.79 -0.16 2.01 16 12 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 13 C -0.11 -1.85 4.55 -29.79 -0.14 -1.98 16 14 C -0.10 -1.76 5.51 -27.94 -0.15 -1.91 16 15 C -0.14 -2.71 5.72 -27.23 -0.16 -2.86 16 16 C 0.18 4.24 4.67 -2.95 -0.01 4.22 16 17 N -0.58 -14.77 2.27 -172.09 -0.39 -15.16 16 18 C -0.25 -7.12 9.44 -15.06 -0.14 -7.27 16 19 H 0.07 2.03 7.88 -52.49 -0.41 1.62 16 20 C 0.00 0.08 4.87 -17.43 -0.08 0.00 16 21 N -0.91 -26.72 11.01 55.49 0.61 -26.11 16 22 Si 0.90 22.50 29.58 -169.99 -5.03 17.47 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.16 3.48 5.23 -4.09 -0.02 3.46 16 27 N -0.21 -3.02 12.04 32.84 0.40 -2.63 16 28 N -0.07 -0.89 12.91 60.35 0.78 -0.11 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 34 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.07 0.33 7.44 -51.93 -0.39 -0.05 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.20 1.86 7.63 -52.49 -0.40 1.46 16 39 H 0.40 5.72 8.26 -40.82 -0.34 5.38 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.84 7.35 -51.93 -0.38 0.46 16 42 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.81 7.31 -51.93 -0.38 0.43 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.02 0.63 8.03 -51.92 -0.42 0.21 16 47 H 0.08 2.01 6.33 -51.93 -0.33 1.68 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 50 H 0.05 1.19 7.95 -51.93 -0.41 0.78 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -33.32 397.12 -7.41 -40.73 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.44 Total: 2.17 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.96 Total: 4.29 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.94 Total: -59.69 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.32 -7.41 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034236898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.472 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds