Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.52995 * 109.47261 * 239.99977 * 2 1 3 5 5 N 1.46506 * 109.47371 * 119.99764 * 2 1 3 6 6 C 1.34816 * 126.59306 * 74.99813 * 5 2 1 7 7 C 1.36596 * 106.83807 * 180.02562 * 6 5 2 8 8 C 1.47514 * 125.77034 * 179.97438 * 7 6 5 9 9 O 1.21601 * 120.00000 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00375 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00379 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.32312 * 35.34685 * 11 10 8 13 13 C 1.47089 * 109.32638 * 155.00118 * 11 10 8 14 14 C 1.52572 * 114.20428 * 182.97041 * 13 11 10 15 15 C 1.51038 * 109.27671 * 274.77703 * 14 13 11 16 16 C 1.53943 * 109.96589 * 92.06770 * 15 14 13 17 17 N 1.47604 * 112.14560 * 319.41661 * 16 15 14 18 18 C 1.36934 * 118.64606 * 137.84587 * 17 16 15 19 19 H 1.07998 * 120.00569 * 206.53333 * 18 17 16 20 20 C 1.38818 * 119.99781 * 26.53350 * 18 17 16 21 21 N 1.31623 * 119.99809 * 15.66217 * 20 18 17 22 22 Si 1.86795 * 120.00190 * 195.66428 * 20 18 17 23 23 H 1.48499 * 109.47227 * 89.99694 * 22 20 18 24 24 H 1.48493 * 109.47610 * 210.00050 * 22 20 18 25 25 H 1.48504 * 109.46915 * 330.00013 * 22 20 18 26 26 C 1.44580 * 122.71378 * 317.87324 * 17 16 15 27 27 N 1.34400 * 108.45573 * 0.24120 * 7 6 5 28 28 N 1.28762 * 109.52866 * 359.58783 * 27 7 6 29 29 H 1.08999 * 109.47025 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.47149 * 60.00400 * 1 2 3 31 31 H 1.09006 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47402 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46721 * 299.99883 * 3 2 1 34 34 H 1.08996 * 109.47156 * 59.99708 * 3 2 1 35 35 H 1.09006 * 109.46908 * 299.99762 * 4 2 1 36 36 H 1.08998 * 109.47347 * 59.99744 * 4 2 1 37 37 H 1.09004 * 109.47691 * 179.97438 * 4 2 1 38 38 H 1.07996 * 126.57826 * 0.02562 * 6 5 2 39 39 H 0.97005 * 119.99520 * 359.97438 * 10 8 7 40 40 H 1.09003 * 108.51460 * 304.14264 * 13 11 10 41 41 H 1.08999 * 108.51779 * 61.79567 * 13 11 10 42 42 H 1.08994 * 109.48803 * 34.87407 * 14 13 11 43 43 H 1.09004 * 109.48914 * 154.94690 * 14 13 11 44 44 H 1.08998 * 109.44391 * 331.90595 * 15 14 13 45 45 H 1.08992 * 109.31329 * 212.14948 * 15 14 13 46 46 H 1.09008 * 108.94601 * 198.73113 * 16 15 14 47 47 H 1.08995 * 108.95089 * 80.10695 * 16 15 14 48 48 H 0.96997 * 119.99797 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.44903 * 330.68232 * 26 17 16 50 50 H 1.09000 * 109.45078 * 210.76607 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0216 1.4106 7 6 2.5629 -2.2214 2.6490 8 6 2.7638 -3.5291 3.3014 9 8 2.4358 -4.5507 2.7293 10 7 3.3110 -3.5915 4.5315 11 6 3.5101 -4.8902 5.1796 12 1 3.7734 -5.6327 4.4264 13 6 4.6014 -4.7828 6.1599 14 6 4.9516 -6.0964 6.8526 15 6 4.0363 -6.2948 8.0375 16 6 2.7981 -7.1063 7.6152 17 7 2.2913 -6.6990 6.2901 18 6 1.8948 -7.6717 5.4116 19 1 1.9312 -7.4864 4.3482 20 6 1.4460 -8.8959 5.8878 21 7 1.1077 -9.0260 7.1531 22 14 1.3222 -10.3588 4.7329 23 1 2.6052 -11.1064 4.7416 24 1 0.2252 -11.2531 5.1824 25 1 1.0377 -9.8800 3.3562 26 6 2.1967 -5.3155 5.8812 27 7 2.8754 -1.0247 3.1749 28 7 2.5712 -0.0942 2.3384 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6660 -2.7836 0.7332 39 1 3.5730 -2.7765 4.9877 40 1 5.4905 -4.4132 5.6490 41 1 4.3136 -4.0567 6.9202 42 1 4.8273 -6.9216 6.1514 43 1 5.9858 -6.0624 7.1952 44 1 3.7195 -5.3237 8.4179 45 1 4.5712 -6.8325 8.8202 46 1 2.0109 -6.9616 8.3551 47 1 3.0617 -8.1635 7.5837 48 1 0.7945 -9.8815 7.4860 49 1 2.0338 -4.6883 6.7577 50 1 1.3615 -5.1974 5.1908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034236898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = 53.431970 kcal Electronic energy + Delta-G solvation = -29754.993308 eV Core-core repulsion = 25818.982403 eV Total energy + Delta-G solvation = -3936.010904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.32216 -40.86456 -39.15675 -38.28333 -36.22435 -34.82051 -33.07127 -32.87635 -32.32348 -31.04139 -28.47477 -28.43025 -27.88062 -26.07968 -25.21218 -24.68720 -23.93456 -21.82619 -21.57947 -21.04338 -20.60639 -18.61252 -18.57387 -17.48761 -17.34767 -17.12053 -16.61192 -16.39670 -15.78324 -15.73602 -15.47831 -15.31227 -15.06882 -14.83898 -14.69365 -14.26650 -14.07809 -13.80197 -13.64986 -13.39839 -13.33210 -13.18225 -13.09721 -12.98867 -12.80770 -12.78586 -12.46730 -12.43864 -12.37261 -12.32461 -12.01792 -11.97030 -11.64587 -11.45885 -11.37640 -11.27867 -11.15773 -11.11594 -10.52313 -10.39311 -10.07688 -8.62395 -7.85026 -5.31122 0.13585 0.62795 1.01925 1.44812 1.45314 1.55650 2.11714 2.27447 2.53481 3.15929 3.24043 3.27883 3.63963 3.69139 3.76159 3.77539 3.92448 3.94110 4.12574 4.17586 4.27722 4.41271 4.52048 4.54758 4.56675 4.59289 4.66952 4.72829 4.75469 4.77281 4.78818 4.80828 5.01196 5.06020 5.06837 5.13145 5.18038 5.23645 5.26621 5.27915 5.37143 5.43123 5.53418 5.65065 5.65928 5.72546 5.84774 6.42366 6.50239 6.92097 7.20214 7.22942 7.95753 8.32001 9.19598 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.002784 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.943276 B =10053.329923 C =11277.263505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 C -0.146 4.146 4 C -0.161 4.161 5 N -0.337 5.337 6 C 0.103 3.897 7 C -0.118 4.118 8 C 0.597 3.403 9 O -0.572 6.572 10 N -0.697 5.697 11 C 0.136 3.864 12 H 0.054 0.946 13 C -0.110 4.110 14 C -0.096 4.096 15 C -0.132 4.132 16 C 0.185 3.815 17 N -0.596 5.596 18 C -0.260 4.260 19 H 0.052 0.948 20 C -0.045 4.045 21 N -0.933 5.933 22 Si 0.960 3.040 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.160 3.840 27 N -0.223 5.223 28 N -0.079 5.079 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.222 0.778 39 H 0.413 0.587 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.072 0.928 46 H -0.006 1.006 47 H 0.042 0.958 48 H 0.250 0.750 49 H 0.045 0.955 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 22.136 -14.860 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.078 3.922 3 C -0.203 4.203 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.055 4.055 7 C -0.257 4.257 8 C 0.382 3.618 9 O -0.450 6.450 10 N -0.348 5.348 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.148 4.148 14 C -0.134 4.134 15 C -0.170 4.170 16 C 0.060 3.940 17 N -0.318 5.318 18 C -0.391 4.391 19 H 0.070 0.930 20 C -0.240 4.240 21 N -0.579 5.579 22 Si 0.789 3.211 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.031 3.969 27 N -0.096 5.096 28 N -0.059 5.059 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.238 0.762 39 H 0.250 0.750 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.012 0.988 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.239 22.655 -14.506 27.233 hybrid contribution -0.667 -1.744 -0.549 1.946 sum 3.572 20.911 -15.054 26.013 Atomic orbital electron populations 1.22325 0.90672 1.03951 1.04814 1.21609 0.96104 0.94515 0.80013 1.22019 1.01901 0.91746 1.04678 1.22349 1.02196 1.01723 0.95667 1.51157 1.40747 1.04823 1.15634 1.23551 0.96841 0.87795 0.97358 1.21354 1.14680 0.92857 0.96836 1.17099 0.77087 0.86166 0.81458 1.90842 1.52615 1.35931 1.65594 1.45807 1.62043 1.10285 1.16647 1.20794 0.97967 0.83361 0.94975 0.92792 1.20540 0.97252 0.98901 0.98131 1.20827 0.99028 0.96662 0.96900 1.21978 0.96549 1.00487 0.98007 1.20867 0.91901 0.97025 0.84209 1.43734 1.72800 1.00681 1.14614 1.19399 1.36275 0.94433 0.88967 0.92990 1.25678 0.99114 1.01543 0.97681 1.70225 1.48244 1.24193 1.15257 0.85372 0.77203 0.79797 0.78763 1.20807 1.21722 1.20223 1.20969 0.94331 0.85548 0.96038 1.74586 1.13890 0.98022 1.23126 1.81825 1.16392 1.17084 0.90553 0.92573 0.86667 0.91516 0.92202 0.87095 0.91930 0.90850 0.86581 0.91941 0.76196 0.75006 0.90763 0.90483 0.93869 0.89838 0.91795 0.90964 0.98785 0.93976 0.94132 0.93646 0.96472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.74 71.98 0.63 -0.68 16 2 C 0.16 1.67 1.25 3.60 0.00 1.67 16 3 C -0.15 -1.29 8.11 71.98 0.58 -0.71 16 4 C -0.16 -1.06 8.30 71.98 0.60 -0.46 16 5 N -0.34 -6.46 3.44 -306.90 -1.06 -7.52 16 6 C 0.10 2.30 10.43 83.85 0.87 3.18 16 7 C -0.12 -3.42 6.99 40.81 0.29 -3.13 16 8 C 0.60 21.16 7.74 86.69 0.67 21.84 16 9 O -0.57 -24.76 16.53 -4.04 -0.07 -24.82 16 10 N -0.70 -22.85 5.05 -451.48 -2.28 -25.13 16 11 C 0.14 5.14 2.33 43.79 0.10 5.24 16 12 H 0.05 2.45 7.58 -2.39 -0.02 2.43 16 13 C -0.11 -3.37 4.55 28.61 0.13 -3.24 16 14 C -0.10 -3.19 5.51 29.81 0.16 -3.03 16 15 C -0.13 -4.75 5.72 30.27 0.17 -4.57 16 16 C 0.18 9.10 4.67 86.49 0.40 9.51 16 17 N -0.60 -31.27 2.27 -698.38 -1.58 -32.85 16 18 C -0.26 -15.31 9.44 84.04 0.79 -14.52 16 19 H 0.05 3.19 7.88 -2.91 -0.02 3.17 16 20 C -0.04 -2.63 4.87 84.86 0.41 -2.22 16 21 N -0.93 -56.83 11.01 21.65 0.24 -56.59 16 22 Si 0.96 47.58 29.58 68.60 2.03 49.60 16 23 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 26 C 0.16 7.24 5.23 87.37 0.46 7.70 16 27 N -0.22 -6.34 12.04 -50.00 -0.60 -6.94 16 28 N -0.08 -1.98 12.91 37.02 0.48 -1.50 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.06 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.07 0.49 7.44 -2.38 -0.02 0.47 16 36 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.22 3.86 7.63 -2.91 -0.02 3.83 16 39 H 0.41 11.34 8.26 -92.70 -0.77 10.58 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.07 7.35 -2.39 -0.02 2.05 16 42 H 0.04 1.75 7.48 -2.39 -0.02 1.73 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.06 2.10 7.31 -2.39 -0.02 2.08 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H -0.01 -0.32 8.03 -2.38 -0.02 -0.34 16 47 H 0.04 2.33 6.33 -2.39 -0.02 2.31 16 48 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 49 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 50 H 0.02 0.86 7.95 -2.39 -0.02 0.84 16 Total: -1.00 -76.87 397.12 3.60 -73.27 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.16 Total: 15.91 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.28 Total: 16.58 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -4.80 Total: -130.54 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.07 Total: -24.82 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.87 3.60 -73.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034236898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.698 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds