Wall clock time and date at job start Tue Mar 31 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52998 * 109.47179 * 239.99591 * 2 1 3 5 5 N 1.46508 * 109.46941 * 119.99604 * 2 1 3 6 6 C 1.34576 * 125.74945 * 75.00188 * 5 2 1 7 7 N 1.30873 * 107.62973 * 180.02562 * 6 5 2 8 8 C 1.34553 * 107.26566 * 359.97438 * 7 6 5 9 9 C 1.47865 * 126.04785 * 179.97438 * 8 7 6 10 10 O 1.21556 * 119.99755 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00065 * 0.03008 * 9 8 7 12 12 C 1.46504 * 120.00048 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.36025 * 324.71977 * 12 11 9 14 14 C 1.54848 * 109.35752 * 204.99495 * 12 11 9 15 15 C 1.50127 * 110.81324 * 200.92532 * 14 12 11 16 16 C 1.52524 * 105.41056 * 97.69134 * 15 14 12 17 17 C 1.46246 * 114.27473 * 270.58696 * 16 15 14 18 18 N 1.50174 * 107.52763 * 58.41316 * 17 16 15 19 19 C 1.36931 * 120.53639 * 109.56731 * 18 17 16 20 20 H 1.08004 * 119.99977 * 172.84410 * 19 18 17 21 21 C 1.38819 * 120.00300 * 352.84291 * 19 18 17 22 22 N 1.31616 * 119.99532 * 319.30052 * 21 19 18 23 23 Si 1.86802 * 120.00013 * 139.29464 * 21 19 18 24 24 H 1.48494 * 109.46784 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47014 * 60.00199 * 23 21 19 26 26 H 1.48496 * 109.47313 * 300.00228 * 23 21 19 27 27 C 1.43432 * 118.92662 * 289.83617 * 18 17 16 28 28 N 1.28857 * 125.74569 * 255.31358 * 5 2 1 29 29 H 1.09000 * 109.47060 * 300.00421 * 1 2 3 30 30 H 1.09002 * 109.46860 * 60.00523 * 1 2 3 31 31 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46877 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46839 * 299.99490 * 3 2 1 34 34 H 1.09000 * 109.47510 * 59.99855 * 3 2 1 35 35 H 1.08997 * 109.46827 * 299.99905 * 4 2 1 36 36 H 1.09002 * 109.47318 * 60.00166 * 4 2 1 37 37 H 1.09004 * 109.47161 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.18607 * 0.02562 * 6 5 2 39 39 H 0.97006 * 120.00326 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.20441 * 80.58964 * 14 12 11 41 41 H 1.08999 * 109.20970 * 321.27605 * 14 12 11 42 42 H 1.08992 * 110.25071 * 338.71747 * 15 14 12 43 43 H 1.08998 * 110.36908 * 216.71900 * 15 14 12 44 44 H 1.08999 * 108.52632 * 149.35177 * 16 15 14 45 45 H 1.08994 * 108.40503 * 31.74138 * 16 15 14 46 46 H 1.08994 * 109.84609 * 298.90236 * 17 16 15 47 47 H 1.09005 * 109.90189 * 177.94928 * 17 16 15 48 48 H 0.97000 * 120.00306 * 353.65432 * 22 21 19 49 49 H 1.08998 * 108.16066 * 213.03735 * 27 18 17 50 50 H 1.09004 * 108.15966 * 329.60760 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 2.0139 -2.0219 1.3925 7 7 2.5273 -2.2502 2.5745 8 6 2.8491 -1.0572 3.1072 9 6 3.4589 -0.8335 4.4355 10 8 3.7045 0.2970 4.8089 11 7 3.7425 -1.8828 5.2322 12 6 4.3472 -1.6612 6.5480 13 1 5.0334 -0.8162 6.4926 14 6 5.1275 -2.9289 6.9744 15 6 5.3250 -2.9584 8.4624 16 6 4.2181 -3.8594 9.0003 17 6 2.9772 -3.1578 9.3269 18 7 2.5006 -2.4760 8.0765 19 6 1.3843 -2.9240 7.4222 20 1 0.9822 -2.3611 6.5927 21 6 0.7693 -4.1016 7.8248 22 7 1.4997 -5.1413 8.1681 23 14 -1.0947 -4.2104 7.8796 24 1 -1.4982 -5.5633 8.3400 25 1 -1.6450 -3.9642 6.5225 26 1 -1.6227 -3.1900 8.8205 27 6 3.2370 -1.3517 7.5756 28 7 2.5192 -0.1251 2.2402 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2490 36 1 1.6767 -0.2076 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.6521 -2.7674 0.6997 39 1 3.5462 -2.7849 4.9344 40 1 6.1007 -2.9330 6.4834 41 1 4.5688 -3.8135 6.6691 42 1 5.2286 -1.9546 8.8757 43 1 6.3023 -3.3744 8.7072 44 1 4.5821 -4.3558 9.8998 45 1 3.9989 -4.6200 8.2511 46 1 3.1646 -2.4168 10.1040 47 1 2.2267 -3.8706 9.6687 48 1 2.4625 -5.1170 8.0527 49 1 2.5316 -0.6639 7.1094 50 1 3.6931 -0.8395 8.4228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034394932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:05 Heat of formation + Delta-G solvation = 86.039653 kcal Electronic energy + Delta-G solvation = -30491.633581 eV Core-core repulsion = 26557.036652 eV Total energy + Delta-G solvation = -3934.596929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.41693 -39.34892 -37.91226 -37.37553 -34.40152 -33.26341 -32.54558 -31.23515 -30.83372 -29.82184 -27.98508 -27.85247 -26.16638 -24.82931 -23.71734 -22.99504 -22.52713 -20.57047 -20.19105 -19.81377 -19.17105 -17.67689 -17.02120 -16.53161 -16.50521 -15.78017 -15.16960 -14.83285 -14.62269 -14.50910 -14.44201 -13.99714 -13.60105 -13.50936 -13.33433 -13.12651 -12.86936 -12.75025 -12.62367 -12.34468 -12.26264 -12.08365 -12.06199 -11.78425 -11.72129 -11.36623 -10.99776 -10.80077 -10.52475 -10.34876 -10.31427 -10.26705 -10.09835 -9.97128 -9.77435 -9.71708 -9.61936 -9.43113 -9.38084 -8.61737 -8.06325 -6.88266 -6.08854 -2.93153 1.58068 2.09618 2.28560 3.45697 3.56827 3.63106 3.78484 3.79483 3.97397 4.20707 4.28795 4.31612 4.68506 4.70934 4.93845 4.95444 5.09780 5.14193 5.22272 5.24133 5.26231 5.28477 5.34180 5.38470 5.47583 5.48456 5.67919 5.76864 5.84747 6.00460 6.04393 6.06484 6.16183 6.31041 6.41147 6.42794 6.45926 6.57640 6.67175 6.74886 6.76121 6.92750 6.97588 7.14157 7.30265 7.32028 7.92880 8.10179 8.25911 8.61886 8.68483 9.16542 9.94175 10.37677 11.21793 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.003564 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.770736 B = 7853.764730 C = 9221.270312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.297 5.297 6 C 0.185 3.815 7 N -0.476 5.476 8 C 0.148 3.852 9 C 0.611 3.389 10 O -0.536 6.536 11 N -0.680 5.680 12 C 0.115 3.885 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.136 4.136 17 C 0.129 3.871 18 N -0.586 5.586 19 C -0.348 4.348 20 H 0.063 0.937 21 C -0.015 4.015 22 N -0.903 5.903 23 Si 1.034 2.966 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.296 1.296 27 C 0.153 3.847 28 N -0.253 5.253 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.219 0.781 39 H 0.409 0.591 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.095 0.905 48 H 0.273 0.727 49 H 0.041 0.959 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 6.697 -17.328 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.094 5.094 6 C -0.111 4.111 7 N -0.201 5.201 8 C -0.132 4.132 9 C 0.392 3.608 10 O -0.411 6.411 11 N -0.330 5.330 12 C 0.007 3.993 13 H 0.095 0.905 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.175 4.175 17 C 0.005 3.995 18 N -0.307 5.307 19 C -0.476 4.476 20 H 0.081 0.919 21 C -0.217 4.217 22 N -0.545 5.545 23 Si 0.864 3.136 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.224 1.224 27 C 0.022 3.978 28 N -0.091 5.091 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.245 0.755 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.113 0.887 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.123 6.887 -16.314 17.834 hybrid contribution 0.913 0.277 -1.162 1.503 sum 3.036 7.164 -17.475 19.129 Atomic orbital electron populations 1.22274 0.91827 1.03739 1.04068 1.21110 0.95298 0.94260 0.80779 1.21988 1.02496 0.92376 1.03697 1.22251 1.02616 1.01207 0.95661 1.47757 1.42093 1.06236 1.13325 1.26296 1.02075 0.86361 0.96330 1.71347 1.16075 1.26066 1.06643 1.23918 1.05703 0.85454 0.98140 1.16240 0.78444 0.85188 0.80900 1.90769 1.53853 1.22561 1.73933 1.45716 1.60971 1.09279 1.17009 1.22868 0.96350 0.97508 0.82529 0.90492 1.21668 0.98378 0.98379 0.96547 1.20940 0.98008 1.00563 0.95261 1.21102 0.96348 0.99342 1.00688 1.20601 0.95150 0.95924 0.87788 1.44395 1.28099 1.34050 1.24198 1.19891 1.02551 1.07866 1.17294 0.91898 1.25334 1.05269 0.90712 1.00372 1.70859 1.08498 1.26836 1.48301 0.83972 0.77996 0.75468 0.76124 1.21388 1.22383 1.22424 1.20635 0.92505 0.90720 0.93916 1.74269 1.13938 1.25400 0.95471 0.91147 0.89716 0.91267 0.91338 0.90460 0.90483 0.91100 0.89447 0.91207 0.76453 0.75477 0.93544 0.90820 0.91717 0.92595 0.94220 0.90983 0.95824 0.88734 0.91401 0.94030 0.94246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.72 37.16 0.32 -0.76 16 2 C 0.17 1.35 1.23 -131.82 -0.16 1.19 16 3 C -0.15 -1.20 8.05 37.16 0.30 -0.90 16 4 C -0.16 -0.81 8.28 37.16 0.31 -0.50 16 5 N -0.30 -3.73 3.16 -49.83 -0.16 -3.89 16 6 C 0.18 2.33 11.71 -90.49 -1.06 1.27 16 7 N -0.48 -8.12 11.09 -12.37 -0.14 -8.26 16 8 C 0.15 2.80 7.96 -156.35 -1.24 1.55 16 9 C 0.61 12.72 7.64 -12.32 -0.09 12.63 16 10 O -0.54 -12.33 16.75 5.32 0.09 -12.24 16 11 N -0.68 -13.55 5.08 -53.09 -0.27 -13.82 16 12 C 0.12 2.23 2.91 -66.22 -0.19 2.04 16 13 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 14 C -0.11 -1.98 5.23 -27.19 -0.14 -2.12 16 15 C -0.11 -1.87 5.76 -28.40 -0.16 -2.03 16 16 C -0.14 -2.69 4.96 -30.19 -0.15 -2.84 16 17 C 0.13 2.94 5.22 -5.20 -0.03 2.91 16 18 N -0.59 -14.30 2.62 -175.39 -0.46 -14.76 16 19 C -0.35 -9.56 9.46 -15.06 -0.14 -9.70 16 20 H 0.06 1.84 8.05 -52.48 -0.42 1.41 16 21 C -0.01 -0.41 4.53 -17.43 -0.08 -0.49 16 22 N -0.90 -25.77 11.99 55.49 0.67 -25.10 16 23 Si 1.03 25.40 30.06 -169.99 -5.11 20.29 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.15 3.36 4.75 -4.93 -0.02 3.34 16 28 N -0.25 -4.29 11.09 32.07 0.36 -3.94 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 35 H 0.07 0.28 7.34 -51.93 -0.38 -0.10 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.22 1.66 7.53 -52.49 -0.39 1.27 16 39 H 0.41 8.25 8.15 -40.82 -0.33 7.91 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.47 6.58 -51.93 -0.34 1.13 16 42 H 0.06 1.09 6.28 -51.93 -0.33 0.77 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.60 4.65 -51.93 -0.24 1.36 16 46 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 47 H 0.09 2.44 5.61 -51.93 -0.29 2.14 16 48 H 0.27 7.57 4.95 -40.82 -0.20 7.37 16 49 H 0.04 1.02 7.81 -51.93 -0.41 0.61 16 50 H 0.04 0.81 6.89 -51.93 -0.36 0.45 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -33.91 388.55 -9.67 -43.58 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.95 Total: 6.71 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.55 Total: 5.59 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 0.00 Total: -69.77 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.11 Total: 20.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.91 -9.67 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.615 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds