Wall clock time and date at job start Tue Mar 31 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52998 * 109.47179 * 239.99591 * 2 1 3 5 5 N 1.46508 * 109.46941 * 119.99604 * 2 1 3 6 6 C 1.34576 * 125.74945 * 75.00188 * 5 2 1 7 7 N 1.30873 * 107.62973 * 180.02562 * 6 5 2 8 8 C 1.34553 * 107.26566 * 359.97438 * 7 6 5 9 9 C 1.47865 * 126.04785 * 179.97438 * 8 7 6 10 10 O 1.21556 * 119.99755 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00065 * 0.03008 * 9 8 7 12 12 C 1.46504 * 120.00048 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.36025 * 324.71977 * 12 11 9 14 14 C 1.54848 * 109.35752 * 204.99495 * 12 11 9 15 15 C 1.50127 * 110.81324 * 200.92532 * 14 12 11 16 16 C 1.52524 * 105.41056 * 97.69134 * 15 14 12 17 17 C 1.46246 * 114.27473 * 270.58696 * 16 15 14 18 18 N 1.50174 * 107.52763 * 58.41316 * 17 16 15 19 19 C 1.36931 * 120.53639 * 109.56731 * 18 17 16 20 20 H 1.08004 * 119.99977 * 172.84410 * 19 18 17 21 21 C 1.38819 * 120.00300 * 352.84291 * 19 18 17 22 22 N 1.31616 * 119.99532 * 319.30052 * 21 19 18 23 23 Si 1.86802 * 120.00013 * 139.29464 * 21 19 18 24 24 H 1.48494 * 109.46784 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47014 * 60.00199 * 23 21 19 26 26 H 1.48496 * 109.47313 * 300.00228 * 23 21 19 27 27 C 1.43432 * 118.92662 * 289.83617 * 18 17 16 28 28 N 1.28857 * 125.74569 * 255.31358 * 5 2 1 29 29 H 1.09000 * 109.47060 * 300.00421 * 1 2 3 30 30 H 1.09002 * 109.46860 * 60.00523 * 1 2 3 31 31 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46877 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46839 * 299.99490 * 3 2 1 34 34 H 1.09000 * 109.47510 * 59.99855 * 3 2 1 35 35 H 1.08997 * 109.46827 * 299.99905 * 4 2 1 36 36 H 1.09002 * 109.47318 * 60.00166 * 4 2 1 37 37 H 1.09004 * 109.47161 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.18607 * 0.02562 * 6 5 2 39 39 H 0.97006 * 120.00326 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.20441 * 80.58964 * 14 12 11 41 41 H 1.08999 * 109.20970 * 321.27605 * 14 12 11 42 42 H 1.08992 * 110.25071 * 338.71747 * 15 14 12 43 43 H 1.08998 * 110.36908 * 216.71900 * 15 14 12 44 44 H 1.08999 * 108.52632 * 149.35177 * 16 15 14 45 45 H 1.08994 * 108.40503 * 31.74138 * 16 15 14 46 46 H 1.08994 * 109.84609 * 298.90236 * 17 16 15 47 47 H 1.09005 * 109.90189 * 177.94928 * 17 16 15 48 48 H 0.97000 * 120.00306 * 353.65432 * 22 21 19 49 49 H 1.08998 * 108.16066 * 213.03735 * 27 18 17 50 50 H 1.09004 * 108.15966 * 329.60760 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 2.0139 -2.0219 1.3925 7 7 2.5273 -2.2502 2.5745 8 6 2.8491 -1.0572 3.1072 9 6 3.4589 -0.8335 4.4355 10 8 3.7045 0.2970 4.8089 11 7 3.7425 -1.8828 5.2322 12 6 4.3472 -1.6612 6.5480 13 1 5.0334 -0.8162 6.4926 14 6 5.1275 -2.9289 6.9744 15 6 5.3250 -2.9584 8.4624 16 6 4.2181 -3.8594 9.0003 17 6 2.9772 -3.1578 9.3269 18 7 2.5006 -2.4760 8.0765 19 6 1.3843 -2.9240 7.4222 20 1 0.9822 -2.3611 6.5927 21 6 0.7693 -4.1016 7.8248 22 7 1.4997 -5.1413 8.1681 23 14 -1.0947 -4.2104 7.8796 24 1 -1.4982 -5.5633 8.3400 25 1 -1.6450 -3.9642 6.5225 26 1 -1.6227 -3.1900 8.8205 27 6 3.2370 -1.3517 7.5756 28 7 2.5192 -0.1251 2.2402 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2490 36 1 1.6767 -0.2076 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.6521 -2.7674 0.6997 39 1 3.5462 -2.7849 4.9344 40 1 6.1007 -2.9330 6.4834 41 1 4.5688 -3.8135 6.6691 42 1 5.2286 -1.9546 8.8757 43 1 6.3023 -3.3744 8.7072 44 1 4.5821 -4.3558 9.8998 45 1 3.9989 -4.6200 8.2511 46 1 3.1646 -2.4168 10.1040 47 1 2.2267 -3.8706 9.6687 48 1 2.4625 -5.1170 8.0527 49 1 2.5316 -0.6639 7.1094 50 1 3.6931 -0.8395 8.4228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034394932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:04 Heat of formation + Delta-G solvation = 64.938546 kcal Electronic energy + Delta-G solvation = -30492.548594 eV Core-core repulsion = 26557.036652 eV Total energy + Delta-G solvation = -3935.511942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.55650 -40.97156 -39.50920 -38.23259 -36.15860 -34.95779 -33.70908 -33.00227 -32.24729 -31.37563 -28.51508 -28.43337 -27.93780 -26.39740 -25.24009 -24.32583 -24.03481 -22.21285 -21.31262 -21.14033 -20.85226 -19.01044 -18.88801 -17.64816 -17.54088 -17.35242 -16.73850 -16.36458 -16.07640 -15.79326 -15.57240 -15.25956 -15.21166 -14.97675 -14.80381 -14.31909 -13.98949 -13.81308 -13.78148 -13.47333 -13.32157 -13.25849 -13.05930 -12.80111 -12.76512 -12.56282 -12.46661 -12.41964 -12.18150 -12.02904 -11.93955 -11.76566 -11.54695 -11.48196 -11.45520 -11.33111 -11.25608 -11.16842 -10.62162 -10.37077 -10.01662 -8.85857 -8.26632 -5.05939 0.29802 1.08243 1.17087 1.57065 1.62496 1.82622 2.05777 2.28899 2.67973 3.09436 3.14483 3.26346 3.46480 3.63340 3.71884 3.75509 3.79813 3.86366 4.00817 4.23960 4.37557 4.42148 4.46843 4.53665 4.55420 4.58389 4.65681 4.67591 4.73764 4.75244 4.77665 4.89844 4.93114 5.06096 5.06731 5.12372 5.14392 5.15134 5.18912 5.29187 5.36469 5.40801 5.50382 5.54294 5.64918 5.67482 5.92407 6.39388 6.51673 6.93857 7.11635 7.12965 7.88757 8.31734 9.06217 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.003564 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.770736 B = 7853.764730 C = 9221.270312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.147 4.147 4 C -0.154 4.154 5 N -0.286 5.286 6 C 0.198 3.802 7 N -0.509 5.509 8 C 0.113 3.887 9 C 0.607 3.393 10 O -0.569 6.569 11 N -0.678 5.678 12 C 0.120 3.880 13 H 0.085 0.915 14 C -0.102 4.102 15 C -0.101 4.101 16 C -0.128 4.128 17 C 0.132 3.868 18 N -0.598 5.598 19 C -0.350 4.350 20 H 0.035 0.965 21 C -0.052 4.052 22 N -0.922 5.922 23 Si 1.078 2.922 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.157 3.843 28 N -0.269 5.269 29 H 0.041 0.959 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.270 0.730 39 H 0.407 0.593 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.271 0.729 49 H 0.006 0.994 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 6.375 -19.381 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 C -0.205 4.205 4 C -0.212 4.212 5 N -0.083 5.083 6 C -0.097 4.097 7 N -0.235 5.235 8 C -0.165 4.165 9 C 0.390 3.610 10 O -0.447 6.447 11 N -0.326 5.326 12 C 0.012 3.988 13 H 0.103 0.897 14 C -0.140 4.140 15 C -0.138 4.138 16 C -0.167 4.167 17 C 0.009 3.991 18 N -0.320 5.320 19 C -0.478 4.478 20 H 0.053 0.947 21 C -0.252 4.252 22 N -0.565 5.565 23 Si 0.906 3.094 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.220 1.220 27 C 0.027 3.973 28 N -0.110 5.110 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.285 0.715 39 H 0.243 0.757 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.024 0.976 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.344 6.572 -18.383 19.663 hybrid contribution 0.794 0.467 -0.635 1.119 sum 3.138 7.039 -19.018 20.521 Atomic orbital electron populations 1.22308 0.90423 1.04481 1.04347 1.21719 0.96338 0.94253 0.80212 1.22014 1.01562 0.92832 1.04081 1.22296 1.02019 1.02211 0.94636 1.48254 1.40319 1.06644 1.13115 1.27172 0.99883 0.87112 0.95502 1.71263 1.17631 1.25852 1.08727 1.23543 1.08118 0.86748 0.98122 1.16579 0.77884 0.84764 0.81794 1.90721 1.55363 1.23561 1.75011 1.45721 1.60792 1.09014 1.17088 1.22773 0.95454 0.98943 0.81605 0.89719 1.21597 0.98901 0.95920 0.97574 1.20936 0.98444 1.00368 0.94090 1.20939 0.96013 0.98977 1.00818 1.20573 0.95574 0.95678 0.87311 1.44429 1.28326 1.34548 1.24696 1.19770 1.03926 1.07157 1.16991 0.94675 1.26208 1.07853 0.90563 1.00538 1.70898 1.08708 1.27246 1.49671 0.83343 0.74425 0.75287 0.76349 1.21415 1.21676 1.21978 1.20609 0.92359 0.89383 0.94919 1.74182 1.14254 1.26029 0.96504 0.93937 0.86341 0.90300 0.92792 0.86817 0.93324 0.89363 0.86429 0.92201 0.71483 0.75713 0.90759 0.93284 0.91153 0.89158 0.92262 0.93671 0.94162 0.91977 0.91614 0.97587 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.72 71.98 0.63 -1.10 16 2 C 0.15 2.17 1.23 3.60 0.00 2.18 16 3 C -0.15 -2.24 8.05 71.98 0.58 -1.66 16 4 C -0.15 -0.99 8.28 71.98 0.60 -0.39 16 5 N -0.29 -6.98 3.16 -311.58 -0.99 -7.97 16 6 C 0.20 4.69 11.71 180.30 2.11 6.80 16 7 N -0.51 -17.55 11.09 -193.03 -2.14 -19.69 16 8 C 0.11 4.46 7.96 137.12 1.09 5.55 16 9 C 0.61 26.57 7.64 86.79 0.66 27.24 16 10 O -0.57 -27.53 16.75 -3.89 -0.07 -27.59 16 11 N -0.68 -28.11 5.08 -440.15 -2.24 -30.34 16 12 C 0.12 4.69 2.91 46.10 0.13 4.82 16 13 H 0.08 3.22 7.58 -2.39 -0.02 3.20 16 14 C -0.10 -3.50 5.23 30.30 0.16 -3.35 16 15 C -0.10 -3.18 5.76 29.51 0.17 -3.01 16 16 C -0.13 -4.97 4.96 28.36 0.14 -4.83 16 17 C 0.13 6.01 5.22 83.58 0.44 6.45 16 18 N -0.60 -29.83 2.62 -708.82 -1.86 -31.69 16 19 C -0.35 -19.84 9.46 84.04 0.80 -19.05 16 20 H 0.04 2.16 8.05 -2.91 -0.02 2.14 16 21 C -0.05 -2.97 4.53 84.86 0.38 -2.58 16 22 N -0.92 -53.60 11.99 21.65 0.26 -53.34 16 23 Si 1.08 52.38 30.06 68.60 2.06 54.44 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 27 C 0.16 7.06 4.75 87.42 0.41 7.47 16 28 N -0.27 -9.43 11.09 -52.44 -0.58 -10.01 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.02 8.02 -2.39 -0.02 1.00 16 35 H 0.09 0.29 7.34 -2.39 -0.02 0.28 16 36 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.27 3.09 7.53 -2.91 -0.02 3.07 16 39 H 0.41 17.18 8.15 -92.70 -0.76 16.43 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.96 6.58 -2.39 -0.02 1.95 16 42 H 0.07 2.18 6.28 -2.39 -0.02 2.17 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.04 2.02 4.65 -2.39 -0.01 2.01 16 46 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 47 H 0.06 3.25 5.61 -2.38 -0.01 3.24 16 48 H 0.27 15.41 4.95 -92.71 -0.46 14.95 16 49 H 0.01 0.30 7.81 -2.39 -0.02 0.28 16 50 H 0.06 2.31 6.89 -2.39 -0.02 2.30 16 Total: -1.00 -78.89 388.55 3.26 -75.63 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.50 Total: 26.03 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 8.31 Total: 24.54 kcal Atomic # 7 Polarization: -145.49 SS G_CDS: -7.54 Total: -153.04 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.07 Total: -27.59 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.06 Total: 54.44 kcal Total: -78.89 3.26 -75.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.567 kcal (2) G-P(sol) polarization free energy of solvation -78.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds