Wall clock time and date at job start Tue Mar 31 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47319 * 2 1 4 4 C 1.52995 * 109.47102 * 239.99598 * 2 1 3 5 5 N 1.46507 * 109.46777 * 119.99910 * 2 1 3 6 6 C 1.34583 * 125.74644 * 75.00247 * 5 2 1 7 7 N 1.30866 * 107.62327 * 179.77312 * 6 5 2 8 8 C 1.34556 * 107.27046 * 0.38768 * 7 6 5 9 9 C 1.47866 * 126.05069 * 179.87380 * 8 7 6 10 10 O 1.21558 * 119.99904 * 179.69007 * 9 8 7 11 11 N 1.34774 * 120.00122 * 359.68653 * 9 8 7 12 12 C 1.46495 * 120.00283 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.36568 * 35.00670 * 12 11 9 14 14 C 1.50883 * 109.26571 * 154.68235 * 12 11 9 15 15 C 1.52568 * 109.35899 * 212.02035 * 14 12 11 16 16 C 1.47095 * 114.32286 * 274.98443 * 15 14 12 17 17 C 1.54864 * 110.32102 * 62.80118 * 16 15 14 18 18 N 1.44568 * 109.60427 * 288.73304 * 17 16 15 19 19 C 1.36941 * 118.64601 * 270.70438 * 18 17 16 20 20 H 1.07996 * 119.99657 * 26.51369 * 19 18 17 21 21 C 1.38815 * 120.00161 * 206.51737 * 19 18 17 22 22 N 1.31615 * 119.99788 * 15.68155 * 21 19 18 23 23 Si 1.86797 * 119.99797 * 195.68040 * 21 19 18 24 24 H 1.48502 * 109.47395 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47109 * 120.00034 * 23 21 19 26 26 H 1.48497 * 109.47083 * 239.99655 * 23 21 19 27 27 C 1.47599 * 122.71387 * 90.72715 * 18 17 16 28 28 N 1.28847 * 125.74379 * 255.02210 * 5 2 1 29 29 H 1.08993 * 109.47237 * 300.00228 * 1 2 3 30 30 H 1.09004 * 109.46892 * 60.00292 * 1 2 3 31 31 H 1.08999 * 109.47231 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47618 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47277 * 300.00087 * 3 2 1 34 34 H 1.09002 * 109.47383 * 59.99605 * 3 2 1 35 35 H 1.08999 * 109.47362 * 300.00269 * 4 2 1 36 36 H 1.09004 * 109.47157 * 60.00273 * 4 2 1 37 37 H 1.09001 * 109.47126 * 180.02562 * 4 2 1 38 38 H 1.07997 * 126.19163 * 359.97438 * 6 5 2 39 39 H 0.97006 * 120.00117 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.48623 * 331.98359 * 14 12 11 41 41 H 1.08998 * 109.49016 * 92.05494 * 14 12 11 42 42 H 1.09001 * 108.51230 * 153.73446 * 15 14 12 43 43 H 1.08999 * 108.51773 * 36.23959 * 15 14 12 44 44 H 1.09000 * 109.32863 * 302.54213 * 16 15 14 45 45 H 1.09001 * 109.18884 * 182.97239 * 16 15 14 46 46 H 1.09005 * 109.44472 * 168.68973 * 17 16 15 47 47 H 1.08997 * 109.45049 * 48.77617 * 17 16 15 48 48 H 0.97005 * 119.99797 * 180.02562 * 22 21 19 49 49 H 1.09000 * 108.95387 * 197.18430 * 27 18 17 50 50 H 1.09003 * 108.95177 * 78.55235 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 2.0139 -2.0221 1.3923 7 7 2.5322 -2.2506 2.5720 8 6 2.8486 -1.0574 3.1073 9 6 3.4593 -0.8337 4.4352 10 8 3.7053 0.2966 4.8085 11 7 3.7432 -1.8832 5.2318 12 6 4.3488 -1.6617 6.5472 13 1 3.9572 -0.7386 6.9746 14 6 4.0058 -2.8177 7.4541 15 6 3.8925 -2.3170 8.8909 16 6 5.1729 -2.2500 9.6118 17 6 6.1235 -1.2374 8.9268 18 7 6.5832 -1.7789 7.6676 19 6 7.7218 -2.5396 7.6567 20 1 8.0189 -3.0796 8.5435 21 6 8.4941 -2.6165 6.5058 22 7 8.3228 -1.7405 5.5386 23 14 9.7766 -3.9633 6.3300 24 1 9.7723 -4.8130 7.5478 25 1 9.4591 -4.7972 5.1428 26 1 11.1182 -3.3501 6.1595 27 6 5.8761 -1.5453 6.3932 28 7 2.5240 -0.1255 2.2379 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.6514 -2.7674 0.6999 39 1 3.5472 -2.7853 4.9338 40 1 3.0556 -3.2531 7.1448 41 1 4.7894 -3.5729 7.3929 42 1 3.2222 -2.9809 9.4369 43 1 3.4509 -1.3206 8.8764 44 1 5.6375 -3.2361 9.6145 45 1 4.9896 -1.9348 10.6390 46 1 6.9795 -1.0478 9.5745 47 1 5.5907 -0.3036 8.7474 48 1 8.8623 -1.7945 4.7342 49 1 6.2148 -2.2783 5.6609 50 1 6.1202 -0.5467 6.0308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034394933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:10 Heat of formation + Delta-G solvation = 74.834920 kcal Electronic energy + Delta-G solvation = -29992.031913 eV Core-core repulsion = 26056.949110 eV Total energy + Delta-G solvation = -3935.082803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.49223 -39.31997 -37.74226 -37.29263 -34.32908 -33.47479 -32.63428 -31.14253 -30.67612 -29.77070 -28.02821 -27.87730 -26.05555 -24.79893 -24.04991 -23.08032 -22.61102 -20.37210 -20.23346 -19.81896 -19.10806 -17.70603 -16.65487 -16.53655 -16.47900 -15.77254 -15.22612 -14.94716 -14.62063 -14.55899 -14.13538 -14.03379 -13.72950 -13.36041 -13.22865 -13.12733 -12.92930 -12.77173 -12.69135 -12.34909 -12.29481 -12.13263 -12.00142 -11.77799 -11.41226 -11.24659 -11.06304 -10.93889 -10.64284 -10.41478 -10.37204 -10.35300 -10.16188 -10.08799 -9.87823 -9.72776 -9.69093 -9.49723 -9.40523 -8.44806 -8.29464 -6.56630 -5.68234 -3.13262 1.53113 2.03608 2.20354 3.37421 3.42267 3.49588 3.51616 3.75135 3.92513 4.16288 4.19392 4.27893 4.56734 4.63894 4.87325 4.90971 5.05797 5.08623 5.18666 5.24388 5.33275 5.33942 5.42373 5.43698 5.54974 5.62010 5.71986 5.81091 5.84959 5.98269 6.08198 6.11304 6.28523 6.35614 6.42170 6.50246 6.56454 6.69836 6.74031 6.75180 6.88466 6.98686 7.05224 7.18986 7.47551 7.83657 7.90126 7.92538 8.18548 8.55171 8.65407 9.32012 9.99542 10.44923 11.37823 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.003022 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.283998 B = 9263.675844 C =10391.408344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.150 4.150 4 C -0.160 4.160 5 N -0.296 5.296 6 C 0.184 3.816 7 N -0.483 5.483 8 C 0.148 3.852 9 C 0.611 3.389 10 O -0.519 6.519 11 N -0.695 5.695 12 C 0.121 3.879 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.147 4.147 17 C 0.154 3.846 18 N -0.587 5.587 19 C -0.257 4.257 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.174 3.826 28 N -0.249 5.249 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.219 0.781 39 H 0.404 0.596 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.033 0.967 48 H 0.252 0.748 49 H 0.078 0.922 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.478 0.064 -12.807 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.093 5.093 6 C -0.111 4.111 7 N -0.208 5.208 8 C -0.132 4.132 9 C 0.392 3.608 10 O -0.392 6.392 11 N -0.346 5.346 12 C 0.016 3.984 13 H 0.093 0.907 14 C -0.154 4.154 15 C -0.136 4.136 16 C -0.188 4.188 17 C 0.026 3.974 18 N -0.308 5.308 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.048 3.952 28 N -0.087 5.087 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.239 0.761 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.036 1.313 -12.383 21.917 hybrid contribution 0.460 -1.392 -0.804 1.672 sum -17.577 -0.079 -13.187 21.974 Atomic orbital electron populations 1.22258 0.91869 1.03528 1.04050 1.21127 0.95179 0.94406 0.80766 1.22000 1.02818 0.92213 1.03676 1.22262 1.02890 1.01062 0.95637 1.47761 1.41772 1.06234 1.13518 1.26262 1.01963 0.86450 0.96438 1.71282 1.16289 1.26100 1.07165 1.23964 1.05655 0.85400 0.98190 1.16267 0.78227 0.85349 0.80927 1.90823 1.52798 1.22580 1.72960 1.45854 1.61765 1.08872 1.18150 1.21855 0.97723 0.98463 0.80315 0.90667 1.21281 1.00931 0.98509 0.94631 1.20220 0.98031 1.00203 0.95170 1.21507 0.97012 1.02486 0.97764 1.20740 0.95317 0.93084 0.88260 1.43537 1.26161 1.59332 1.01795 1.19226 0.99738 1.21098 0.98651 0.91567 1.25064 0.97844 0.98137 0.98457 1.70108 1.41858 1.34065 1.08229 0.86288 0.81366 0.81919 0.77593 1.20275 1.21695 1.21827 1.21323 0.84443 1.01136 0.88324 1.74308 1.13569 1.25463 0.95352 0.91247 0.89680 0.91399 0.91108 0.90421 0.90482 0.91167 0.89409 0.91021 0.76444 0.76069 0.92903 0.89952 0.93690 0.93210 0.92054 0.93484 0.93578 0.94887 0.93807 0.90361 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.72 37.16 0.32 -0.51 16 2 C 0.17 1.23 1.23 -131.82 -0.16 1.07 16 3 C -0.15 -1.19 8.04 37.15 0.30 -0.89 16 4 C -0.16 -0.77 8.28 37.15 0.31 -0.46 16 5 N -0.30 -3.43 3.17 -49.84 -0.16 -3.59 16 6 C 0.18 2.03 11.71 -90.49 -1.06 0.97 16 7 N -0.48 -7.30 11.09 -12.36 -0.14 -7.43 16 8 C 0.15 2.64 7.96 -156.34 -1.24 1.40 16 9 C 0.61 12.53 7.79 -12.32 -0.10 12.44 16 10 O -0.52 -12.38 16.74 5.31 0.09 -12.29 16 11 N -0.70 -13.18 4.96 -55.30 -0.27 -13.46 16 12 C 0.12 2.47 2.27 -68.50 -0.16 2.32 16 13 H 0.08 1.62 6.75 -51.93 -0.35 1.27 16 14 C -0.12 -2.06 5.06 -28.02 -0.14 -2.20 16 15 C -0.10 -1.64 5.15 -29.79 -0.15 -1.79 16 16 C -0.15 -2.65 5.74 -28.58 -0.16 -2.81 16 17 C 0.15 3.33 5.65 -4.09 -0.02 3.30 16 18 N -0.59 -14.87 2.27 -172.10 -0.39 -15.26 16 19 C -0.26 -7.08 9.44 -15.06 -0.14 -7.22 16 20 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 21 C 0.00 0.11 4.87 -17.43 -0.08 0.02 16 22 N -0.90 -26.94 11.01 55.49 0.61 -26.33 16 23 Si 0.90 22.07 29.58 -169.99 -5.03 17.04 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 C 0.17 4.38 4.26 -2.94 -0.01 4.37 16 28 N -0.25 -4.06 11.09 32.08 0.36 -3.71 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 35 H 0.07 0.24 7.34 -51.93 -0.38 -0.14 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.22 1.27 7.53 -52.49 -0.40 0.88 16 39 H 0.40 6.85 8.26 -40.82 -0.34 6.51 16 40 H 0.05 0.82 7.94 -51.93 -0.41 0.40 16 41 H 0.08 1.64 7.48 -51.93 -0.39 1.25 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.82 7.36 -51.93 -0.38 0.44 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 1.00 7.99 -51.93 -0.41 0.59 16 47 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.08 2.18 6.31 -51.93 -0.33 1.85 16 50 H 0.03 0.94 8.03 -51.93 -0.42 0.53 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.30 396.11 -9.89 -45.19 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.42 Total: 3.88 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -2.51 Total: 9.99 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: 0.01 Total: -69.78 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.30 -9.89 -45.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.024 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds