Wall clock time and date at job start Tue Mar 31 2020 18:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47319 * 2 1 4 4 C 1.52995 * 109.47102 * 239.99598 * 2 1 3 5 5 N 1.46507 * 109.46777 * 119.99910 * 2 1 3 6 6 C 1.34583 * 125.74644 * 75.00247 * 5 2 1 7 7 N 1.30866 * 107.62327 * 179.77312 * 6 5 2 8 8 C 1.34556 * 107.27046 * 0.38768 * 7 6 5 9 9 C 1.47866 * 126.05069 * 179.87380 * 8 7 6 10 10 O 1.21558 * 119.99904 * 179.69007 * 9 8 7 11 11 N 1.34774 * 120.00122 * 359.68653 * 9 8 7 12 12 C 1.46495 * 120.00283 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.36568 * 35.00670 * 12 11 9 14 14 C 1.50883 * 109.26571 * 154.68235 * 12 11 9 15 15 C 1.52568 * 109.35899 * 212.02035 * 14 12 11 16 16 C 1.47095 * 114.32286 * 274.98443 * 15 14 12 17 17 C 1.54864 * 110.32102 * 62.80118 * 16 15 14 18 18 N 1.44568 * 109.60427 * 288.73304 * 17 16 15 19 19 C 1.36941 * 118.64601 * 270.70438 * 18 17 16 20 20 H 1.07996 * 119.99657 * 26.51369 * 19 18 17 21 21 C 1.38815 * 120.00161 * 206.51737 * 19 18 17 22 22 N 1.31615 * 119.99788 * 15.68155 * 21 19 18 23 23 Si 1.86797 * 119.99797 * 195.68040 * 21 19 18 24 24 H 1.48502 * 109.47395 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47109 * 120.00034 * 23 21 19 26 26 H 1.48497 * 109.47083 * 239.99655 * 23 21 19 27 27 C 1.47599 * 122.71387 * 90.72715 * 18 17 16 28 28 N 1.28847 * 125.74379 * 255.02210 * 5 2 1 29 29 H 1.08993 * 109.47237 * 300.00228 * 1 2 3 30 30 H 1.09004 * 109.46892 * 60.00292 * 1 2 3 31 31 H 1.08999 * 109.47231 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47618 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47277 * 300.00087 * 3 2 1 34 34 H 1.09002 * 109.47383 * 59.99605 * 3 2 1 35 35 H 1.08999 * 109.47362 * 300.00269 * 4 2 1 36 36 H 1.09004 * 109.47157 * 60.00273 * 4 2 1 37 37 H 1.09001 * 109.47126 * 180.02562 * 4 2 1 38 38 H 1.07997 * 126.19163 * 359.97438 * 6 5 2 39 39 H 0.97006 * 120.00117 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.48623 * 331.98359 * 14 12 11 41 41 H 1.08998 * 109.49016 * 92.05494 * 14 12 11 42 42 H 1.09001 * 108.51230 * 153.73446 * 15 14 12 43 43 H 1.08999 * 108.51773 * 36.23959 * 15 14 12 44 44 H 1.09000 * 109.32863 * 302.54213 * 16 15 14 45 45 H 1.09001 * 109.18884 * 182.97239 * 16 15 14 46 46 H 1.09005 * 109.44472 * 168.68973 * 17 16 15 47 47 H 1.08997 * 109.45049 * 48.77617 * 17 16 15 48 48 H 0.97005 * 119.99797 * 180.02562 * 22 21 19 49 49 H 1.09000 * 108.95387 * 197.18430 * 27 18 17 50 50 H 1.09003 * 108.95177 * 78.55235 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 2.0139 -2.0221 1.3923 7 7 2.5322 -2.2506 2.5720 8 6 2.8486 -1.0574 3.1073 9 6 3.4593 -0.8337 4.4352 10 8 3.7053 0.2966 4.8085 11 7 3.7432 -1.8832 5.2318 12 6 4.3488 -1.6617 6.5472 13 1 3.9572 -0.7386 6.9746 14 6 4.0058 -2.8177 7.4541 15 6 3.8925 -2.3170 8.8909 16 6 5.1729 -2.2500 9.6118 17 6 6.1235 -1.2374 8.9268 18 7 6.5832 -1.7789 7.6676 19 6 7.7218 -2.5396 7.6567 20 1 8.0189 -3.0796 8.5435 21 6 8.4941 -2.6165 6.5058 22 7 8.3228 -1.7405 5.5386 23 14 9.7766 -3.9633 6.3300 24 1 9.7723 -4.8130 7.5478 25 1 9.4591 -4.7972 5.1428 26 1 11.1182 -3.3501 6.1595 27 6 5.8761 -1.5453 6.3932 28 7 2.5240 -0.1255 2.2379 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.6514 -2.7674 0.6999 39 1 3.5472 -2.7853 4.9338 40 1 3.0556 -3.2531 7.1448 41 1 4.7894 -3.5729 7.3929 42 1 3.2222 -2.9809 9.4369 43 1 3.4509 -1.3206 8.8764 44 1 5.6375 -3.2361 9.6145 45 1 4.9896 -1.9348 10.6390 46 1 6.9795 -1.0478 9.5745 47 1 5.5907 -0.3036 8.7474 48 1 8.8623 -1.7945 4.7342 49 1 6.2148 -2.2783 5.6609 50 1 6.1202 -0.5467 6.0308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034394933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:09 Heat of formation + Delta-G solvation = 51.804666 kcal Electronic energy + Delta-G solvation = -29993.030579 eV Core-core repulsion = 26056.949110 eV Total energy + Delta-G solvation = -3936.081470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.54783 -40.95779 -39.23750 -38.20872 -36.11916 -35.22822 -33.68976 -32.69687 -32.32819 -31.28386 -28.49604 -28.40009 -27.97059 -26.32329 -25.74056 -24.32763 -24.00463 -21.88382 -21.35277 -21.10882 -20.87286 -18.87070 -18.59564 -17.63041 -17.51487 -17.36561 -17.01711 -16.20385 -16.03026 -15.67837 -15.46704 -15.27164 -15.11009 -14.89004 -14.80336 -14.34607 -14.08976 -13.80497 -13.77090 -13.30227 -13.25378 -13.03739 -13.01011 -12.95522 -12.85035 -12.77737 -12.43982 -12.39626 -12.20298 -12.05905 -12.00893 -11.87497 -11.57630 -11.49282 -11.43053 -11.41348 -11.31207 -11.15158 -10.60732 -10.50629 -10.07803 -8.66805 -7.83875 -5.32856 0.31273 1.09701 1.17185 1.45207 1.46269 1.57835 1.99948 2.28174 2.52258 3.06478 3.24757 3.30882 3.65200 3.66339 3.76318 3.80061 3.88783 3.92765 4.07151 4.29285 4.41642 4.45407 4.53887 4.58126 4.59291 4.62246 4.68203 4.77169 4.79600 4.83824 4.90286 4.95729 5.07939 5.09423 5.11782 5.15932 5.21902 5.30074 5.31353 5.33610 5.37232 5.45319 5.53903 5.63861 5.69287 5.70643 5.78206 6.37271 6.41803 6.96324 7.11724 7.17695 7.92608 8.34257 9.20467 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.003022 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.283998 B = 9263.675844 C =10391.408344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 C -0.150 4.150 4 C -0.156 4.156 5 N -0.287 5.287 6 C 0.201 3.799 7 N -0.503 5.503 8 C 0.116 3.884 9 C 0.607 3.393 10 O -0.567 6.567 11 N -0.686 5.686 12 C 0.136 3.864 13 H 0.064 0.936 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.131 4.131 17 C 0.144 3.856 18 N -0.600 5.600 19 C -0.258 4.258 20 H 0.074 0.926 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.260 1.260 25 H -0.292 1.292 26 H -0.296 1.296 27 C 0.196 3.804 28 N -0.273 5.273 29 H 0.046 0.954 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.275 0.725 39 H 0.416 0.584 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.029 0.971 48 H 0.245 0.755 49 H 0.047 0.953 50 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.081 -2.368 -13.804 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.075 3.925 3 C -0.208 4.208 4 C -0.214 4.214 5 N -0.084 5.084 6 C -0.093 4.093 7 N -0.229 5.229 8 C -0.163 4.163 9 C 0.390 3.610 10 O -0.443 6.443 11 N -0.337 5.337 12 C 0.031 3.969 13 H 0.082 0.918 14 C -0.144 4.144 15 C -0.138 4.138 16 C -0.171 4.171 17 C 0.018 3.982 18 N -0.322 5.322 19 C -0.388 4.388 20 H 0.092 0.908 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.219 1.219 26 H -0.223 1.223 27 C 0.070 3.930 28 N -0.114 5.114 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.290 0.710 39 H 0.253 0.747 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.065 0.935 50 H -0.008 1.008 Dipole moment (debyes) X Y Z Total from point charges -20.675 -1.153 -13.357 24.642 hybrid contribution 1.226 -0.520 -0.594 1.458 sum -19.449 -1.672 -13.952 23.994 Atomic orbital electron populations 1.22275 0.89594 1.04800 1.04440 1.21703 0.96817 0.93828 0.80119 1.22029 1.01215 0.93382 1.04162 1.22315 1.01709 1.02496 0.94878 1.48233 1.40124 1.06878 1.13176 1.27253 0.99469 0.86955 0.95617 1.71202 1.17516 1.25171 1.09040 1.23380 1.08152 0.87008 0.97739 1.16711 0.77511 0.84790 0.82011 1.90776 1.54862 1.24304 1.74348 1.45732 1.61036 1.09291 1.17640 1.21508 0.94061 0.99640 0.81696 0.91770 1.21225 1.01736 0.96487 0.94979 1.20241 0.97935 1.01311 0.94273 1.21320 0.96328 1.00344 0.99136 1.20982 0.96075 0.94262 0.86893 1.43745 1.26187 1.59511 1.02794 1.19584 0.99993 1.20558 0.98702 0.90847 1.25883 1.00364 1.00351 0.98367 1.70323 1.43294 1.36206 1.08698 0.85206 0.78273 0.79124 0.77866 1.18422 1.21869 1.22326 1.20881 0.87763 0.96615 0.87764 1.74222 1.14107 1.26427 0.96597 0.93482 0.86658 0.89676 0.93607 0.86879 0.93036 0.88829 0.86525 0.92939 0.70953 0.74722 0.89677 0.91873 0.90012 0.92878 0.92943 0.90258 0.94152 0.95220 0.94626 0.93482 1.00813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.72 71.98 0.63 -0.50 16 2 C 0.16 1.96 1.23 3.60 0.00 1.97 16 3 C -0.15 -2.35 8.04 71.98 0.58 -1.77 16 4 C -0.16 -0.95 8.28 71.98 0.60 -0.35 16 5 N -0.29 -6.39 3.17 -311.59 -0.99 -7.38 16 6 C 0.20 3.97 11.71 180.30 2.11 6.08 16 7 N -0.50 -14.96 11.09 -193.03 -2.14 -17.10 16 8 C 0.12 4.31 7.96 137.12 1.09 5.40 16 9 C 0.61 26.51 7.79 86.79 0.68 27.19 16 10 O -0.57 -29.29 16.74 -3.90 -0.07 -29.36 16 11 N -0.69 -27.16 4.96 -447.14 -2.22 -29.38 16 12 C 0.14 5.78 2.27 44.63 0.10 5.88 16 13 H 0.06 2.89 6.75 -2.39 -0.02 2.87 16 14 C -0.11 -3.67 5.06 29.76 0.15 -3.52 16 15 C -0.10 -3.07 5.15 28.61 0.15 -2.92 16 16 C -0.13 -4.46 5.74 29.39 0.17 -4.29 16 17 C 0.14 6.31 5.65 87.38 0.49 6.80 16 18 N -0.60 -31.53 2.27 -698.39 -1.59 -33.11 16 19 C -0.26 -14.52 9.44 84.03 0.79 -13.73 16 20 H 0.07 3.97 7.88 -2.91 -0.02 3.95 16 21 C -0.05 -3.20 4.87 84.86 0.41 -2.78 16 22 N -0.94 -59.46 11.01 21.65 0.24 -59.22 16 23 Si 0.97 46.49 29.58 68.60 2.03 48.52 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 27 C 0.20 10.55 4.26 86.49 0.37 10.92 16 28 N -0.27 -9.27 11.09 -52.43 -0.58 -9.85 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 0.89 8.14 -2.38 -0.02 0.88 16 34 H 0.05 1.06 8.02 -2.39 -0.02 1.04 16 35 H 0.09 0.16 7.34 -2.39 -0.02 0.14 16 36 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.28 1.82 7.53 -2.91 -0.02 1.80 16 39 H 0.42 14.39 8.26 -92.70 -0.77 13.62 16 40 H 0.08 2.41 7.94 -2.39 -0.02 2.39 16 41 H 0.06 2.46 7.48 -2.39 -0.02 2.45 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.05 1.63 7.36 -2.39 -0.02 1.62 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.04 1.77 7.99 -2.38 -0.02 1.75 16 47 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 48 H 0.24 15.12 8.31 -92.70 -0.77 14.35 16 49 H 0.05 2.79 6.31 -2.39 -0.02 2.78 16 50 H -0.03 -1.69 8.03 -2.39 -0.02 -1.71 16 Total: -1.00 -85.69 396.11 3.18 -82.51 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.17 Total: 20.00 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 8.32 Total: 34.37 kcal Atomic # 7 Polarization: -148.76 SS G_CDS: -7.28 Total: -156.04 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.07 Total: -29.36 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -85.69 3.18 -82.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.316 kcal (2) G-P(sol) polarization free energy of solvation -85.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds