Wall clock time and date at job start Tue Mar 31 2020 18:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 H 1.09003 * 109.50090 * 304.93531 * 3 2 1 5 5 C 1.53194 * 109.49891 * 65.00024 * 3 2 1 6 6 N 1.46924 * 108.77656 * 174.58832 * 5 3 2 7 7 C 1.34777 * 120.63337 * 126.41205 * 6 5 3 8 8 O 1.21623 * 119.99661 * 354.74317 * 7 6 5 9 9 C 1.47227 * 120.00159 * 174.73883 * 7 6 5 10 10 C 1.37005 * 127.19277 * 269.48404 * 9 7 6 11 11 C 1.50704 * 126.81203 * 359.92780 * 10 9 7 12 12 N 1.33319 * 106.37586 * 179.97438 * 10 9 7 13 13 N 1.28515 * 109.43671 * 0.02562 * 12 10 9 14 14 N 1.28709 * 110.63848 * 359.75024 * 13 12 10 15 15 C 1.46505 * 126.03380 * 180.26294 * 14 13 12 16 16 C 1.52992 * 109.47317 * 275.18132 * 15 14 13 17 17 C 1.46928 * 118.73939 * 306.39052 * 6 5 3 18 18 C 1.53198 * 108.77345 * 53.60893 * 17 6 5 19 19 C 1.53041 * 109.49835 * 184.83833 * 3 2 1 20 20 H 1.08994 * 109.46287 * 298.70252 * 19 3 2 21 21 N 1.46498 * 109.45998 * 58.66462 * 19 3 2 22 22 C 1.36940 * 119.99844 * 204.99955 * 21 19 3 23 23 H 1.08004 * 119.99972 * 359.97438 * 22 21 19 24 24 C 1.38818 * 119.99982 * 179.97438 * 22 21 19 25 25 N 1.31616 * 119.99973 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99866 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47092 * 89.99895 * 26 24 22 28 28 H 1.48505 * 109.46965 * 210.00322 * 26 24 22 29 29 H 1.48502 * 109.47124 * 329.99707 * 26 24 22 30 30 H 1.09000 * 109.46943 * 300.00253 * 1 2 3 31 31 H 1.08999 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46962 * 60.00022 * 1 2 3 33 33 H 1.09001 * 109.46962 * 119.99977 * 2 1 3 34 34 H 1.09000 * 109.46943 * 239.99747 * 2 1 3 35 35 H 1.09003 * 109.58172 * 294.37369 * 5 3 2 36 36 H 1.08995 * 109.58714 * 54.79721 * 5 3 2 37 37 H 1.08998 * 109.46766 * 89.99697 * 11 10 9 38 38 H 1.08998 * 109.47749 * 210.00158 * 11 10 9 39 39 H 1.09004 * 109.47167 * 330.00129 * 11 10 9 40 40 H 1.08996 * 109.47223 * 35.18555 * 15 14 13 41 41 H 1.09008 * 109.46826 * 155.18253 * 15 14 13 42 42 H 1.09004 * 109.47523 * 295.00867 * 16 15 14 43 43 H 1.09000 * 109.47119 * 55.01079 * 16 15 14 44 44 H 1.09002 * 109.47125 * 175.00897 * 16 15 14 45 45 H 1.08996 * 109.58434 * 173.39604 * 17 6 5 46 46 H 1.09000 * 109.58799 * 293.82253 * 17 6 5 47 47 H 1.08997 * 109.49848 * 65.32183 * 18 17 6 48 48 H 1.09003 * 109.49117 * 185.41391 * 18 17 6 49 49 H 0.97004 * 120.00396 * 24.99953 * 21 19 3 50 50 H 0.96997 * 120.00113 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2416 3.4656 1.3493 7 6 1.4818 4.5579 1.5637 8 8 0.2719 4.4534 1.6305 9 6 2.1163 5.8775 1.7171 10 6 2.5376 6.4636 2.8816 11 6 2.4427 5.8845 4.2697 12 7 3.0473 7.6481 2.5433 13 7 2.9580 7.8045 1.2708 14 7 2.4133 6.7743 0.7243 15 6 2.1544 6.5934 -0.7063 16 6 0.8204 7.2483 -1.0700 17 6 3.6923 3.5898 1.1522 18 6 4.0741 2.8879 -0.1549 19 6 3.5656 1.4448 -0.1217 20 1 3.9990 0.9267 0.7337 21 7 3.9578 0.7607 -1.3563 22 6 5.1962 0.1848 -1.4562 23 1 5.8839 0.2354 -0.6250 24 6 5.5677 -0.4639 -2.6259 25 7 6.7578 -1.0178 -2.7218 26 14 4.3784 -0.5507 -4.0639 27 1 4.5816 0.6266 -4.9460 28 1 4.6245 -1.7956 -4.8353 29 1 2.9839 -0.5521 -3.5535 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 0.5497 2.2174 1.3538 36 1 1.9908 1.5397 2.1546 37 1 3.3448 5.3126 4.4872 38 1 2.3412 6.6924 4.9943 39 1 1.5736 5.2296 4.3316 40 1 2.9556 7.0567 -1.2820 41 1 2.1110 5.5286 -0.9358 42 1 0.0091 6.7270 -0.5618 43 1 0.8319 8.2930 -0.7592 44 1 0.6697 7.1915 -2.1480 45 1 3.9641 4.6437 1.0940 46 1 4.2158 3.1208 1.9853 47 1 3.6221 3.4138 -0.9958 48 1 5.1586 2.8891 -0.2650 49 1 3.3403 0.7156 -2.1031 50 1 7.0175 -1.4707 -3.5392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037855700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:44 Heat of formation + Delta-G solvation = 66.791187 kcal Electronic energy + Delta-G solvation = -30900.434269 eV Core-core repulsion = 26965.002664 eV Total energy + Delta-G solvation = -3935.431605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.49894 -40.27711 -38.07146 -35.91335 -35.06611 -34.04936 -32.87319 -31.92877 -31.19705 -30.07597 -29.22883 -28.00163 -25.74518 -24.88785 -24.15823 -23.29862 -22.20560 -21.38690 -20.99049 -20.19285 -19.49779 -18.06879 -17.53648 -16.90527 -16.68117 -16.07857 -15.38121 -15.12167 -14.78111 -14.57308 -14.31607 -13.99565 -13.91543 -13.70993 -13.54033 -13.52004 -13.08689 -12.96077 -12.86264 -12.81153 -12.52443 -12.44354 -12.14354 -12.13912 -11.97210 -11.86415 -11.56232 -11.18184 -11.15605 -11.09509 -10.93612 -10.59834 -10.46318 -10.36654 -10.31061 -10.20735 -9.90177 -9.67992 -9.32520 -9.04024 -8.82193 -7.39262 -5.87397 -3.23876 1.08271 1.66645 2.21757 2.33047 2.76981 3.27740 3.30506 3.37458 3.91956 4.10453 4.33530 4.43781 4.48702 4.65766 4.73012 4.75984 4.87040 4.97681 5.03624 5.05922 5.15886 5.19655 5.31135 5.34185 5.37691 5.39376 5.44116 5.46890 5.51733 5.62915 5.65011 5.67883 5.76008 5.85724 5.88937 5.92232 5.96528 6.06666 6.10326 6.19186 6.21929 6.27801 6.38129 6.57071 6.64377 6.77333 7.08407 7.75611 7.87237 8.21870 8.31314 9.08909 9.81464 10.00557 11.30707 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003613 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.121930 B = 7747.589034 C = 8239.154575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.590 5.590 7 C 0.594 3.406 8 O -0.523 6.523 9 C -0.054 4.054 10 C 0.023 3.977 11 C -0.072 4.072 12 N -0.268 5.268 13 N -0.064 5.064 14 N -0.266 5.266 15 C 0.106 3.894 16 C -0.169 4.169 17 C 0.107 3.893 18 C -0.150 4.150 19 C 0.188 3.812 20 H 0.059 0.941 21 N -0.744 5.744 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.008 3.992 25 N -0.931 5.931 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.361 0.639 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 11.794 8.505 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.378 3.622 8 O -0.398 6.398 9 C -0.188 4.188 10 C -0.117 4.117 11 C -0.130 4.130 12 N -0.133 5.133 13 N -0.043 5.043 14 N -0.064 5.064 15 C -0.014 4.014 16 C -0.228 4.228 17 C -0.016 4.016 18 C -0.191 4.191 19 C 0.078 3.922 20 H 0.077 0.923 21 N -0.385 5.385 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.188 4.188 25 N -0.579 5.579 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.194 0.806 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.811 12.998 8.270 19.413 hybrid contribution -1.006 -1.042 -1.298 1.945 sum -12.818 11.956 6.973 18.864 Atomic orbital electron populations 1.21858 0.96541 1.01325 1.01425 1.21467 0.94598 0.95422 1.03649 1.21839 0.97668 0.96504 0.96794 0.91221 1.21878 0.99644 0.80551 0.98246 1.48157 1.08866 1.06474 1.68682 1.16853 0.85954 0.81983 0.77446 1.90835 1.13049 1.85632 1.50304 1.21789 1.11007 0.96125 0.89928 1.22115 1.00921 0.92505 0.96145 1.20164 1.03175 1.00942 0.88759 1.74824 1.18660 1.16242 1.03620 1.78169 1.14071 1.08999 1.03095 1.47843 1.38082 1.11315 1.09123 1.22275 1.00930 1.04196 0.74037 1.22164 0.95311 1.01893 1.03387 1.21913 0.78797 1.01053 0.99849 1.22675 1.02954 0.98886 0.94617 1.20158 0.90573 0.90474 0.90952 0.92254 1.42756 1.16556 1.66209 1.13014 1.19036 0.90379 1.27594 1.00548 0.89172 1.24655 0.96358 1.00099 0.97664 1.69689 1.19235 1.41296 1.27641 0.86615 0.81081 0.77412 0.83740 1.21188 1.21719 1.20275 0.92915 0.92930 0.93084 0.91765 0.90291 0.88658 0.90676 0.89996 0.89866 0.90539 0.86796 0.87711 0.91194 0.91064 0.89354 0.91142 0.90480 0.92501 0.89704 0.80589 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 37.16 0.36 -1.41 16 2 C -0.11 -1.53 5.31 -26.73 -0.14 -1.68 16 3 C -0.11 -1.46 1.93 -90.50 -0.17 -1.63 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.41 5.33 -3.71 -0.02 1.39 16 6 N -0.59 -7.10 2.97 -174.11 -0.52 -7.62 16 7 C 0.59 7.83 6.71 -12.61 -0.08 7.75 16 8 O -0.52 -8.21 16.52 5.26 0.09 -8.12 16 9 C -0.05 -0.69 4.70 -82.33 -0.39 -1.08 16 10 C 0.02 0.29 7.30 -82.39 -0.60 -0.31 16 11 C -0.07 -0.67 10.28 36.01 0.37 -0.30 16 12 N -0.27 -3.82 12.35 33.51 0.41 -3.41 16 13 N -0.06 -0.89 13.14 60.35 0.79 -0.10 16 14 N -0.27 -3.22 3.38 -57.37 -0.19 -3.41 16 15 C 0.11 0.96 6.99 -4.04 -0.03 0.94 16 16 C -0.17 -1.36 10.24 37.15 0.38 -0.98 16 17 C 0.11 1.27 6.32 -3.71 -0.02 1.24 16 18 C -0.15 -2.17 5.66 -26.61 -0.15 -2.32 16 19 C 0.19 3.06 2.19 -67.89 -0.15 2.91 16 20 H 0.06 1.01 8.08 -51.93 -0.42 0.60 16 21 N -0.74 -15.51 4.14 -53.38 -0.22 -15.73 16 22 C -0.25 -6.33 10.41 -15.06 -0.16 -6.49 16 23 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 26 Si 0.88 20.89 27.74 -169.99 -4.71 16.17 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 30 H 0.05 0.55 6.70 -51.93 -0.35 0.20 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.28 7.22 -51.93 -0.37 0.91 16 35 H 0.10 1.16 5.71 -51.93 -0.30 0.87 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.95 7.75 -51.92 -0.40 0.54 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.36 7.57 5.37 -40.82 -0.22 7.35 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -31.86 399.05 -6.78 -38.64 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -8.32 Total: 6.54 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.90 Total: -1.83 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 1.05 Total: -57.41 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.71 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.86 -6.78 -38.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037855700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.432 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds