Wall clock time and date at job start Tue Mar 31 2020 18:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 H 1.09003 * 109.50090 * 304.93531 * 3 2 1 5 5 C 1.53194 * 109.49891 * 65.00024 * 3 2 1 6 6 N 1.46924 * 108.77656 * 174.58832 * 5 3 2 7 7 C 1.34777 * 120.63337 * 126.41205 * 6 5 3 8 8 O 1.21623 * 119.99661 * 354.74317 * 7 6 5 9 9 C 1.47227 * 120.00159 * 174.73883 * 7 6 5 10 10 C 1.37005 * 127.19277 * 269.48404 * 9 7 6 11 11 C 1.50704 * 126.81203 * 359.92780 * 10 9 7 12 12 N 1.33319 * 106.37586 * 179.97438 * 10 9 7 13 13 N 1.28515 * 109.43671 * 0.02562 * 12 10 9 14 14 N 1.28709 * 110.63848 * 359.75024 * 13 12 10 15 15 C 1.46505 * 126.03380 * 180.26294 * 14 13 12 16 16 C 1.52992 * 109.47317 * 275.18132 * 15 14 13 17 17 C 1.46928 * 118.73939 * 306.39052 * 6 5 3 18 18 C 1.53198 * 108.77345 * 53.60893 * 17 6 5 19 19 C 1.53041 * 109.49835 * 184.83833 * 3 2 1 20 20 H 1.08994 * 109.46287 * 298.70252 * 19 3 2 21 21 N 1.46498 * 109.45998 * 58.66462 * 19 3 2 22 22 C 1.36940 * 119.99844 * 204.99955 * 21 19 3 23 23 H 1.08004 * 119.99972 * 359.97438 * 22 21 19 24 24 C 1.38818 * 119.99982 * 179.97438 * 22 21 19 25 25 N 1.31616 * 119.99973 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99866 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47092 * 89.99895 * 26 24 22 28 28 H 1.48505 * 109.46965 * 210.00322 * 26 24 22 29 29 H 1.48502 * 109.47124 * 329.99707 * 26 24 22 30 30 H 1.09000 * 109.46943 * 300.00253 * 1 2 3 31 31 H 1.08999 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46962 * 60.00022 * 1 2 3 33 33 H 1.09001 * 109.46962 * 119.99977 * 2 1 3 34 34 H 1.09000 * 109.46943 * 239.99747 * 2 1 3 35 35 H 1.09003 * 109.58172 * 294.37369 * 5 3 2 36 36 H 1.08995 * 109.58714 * 54.79721 * 5 3 2 37 37 H 1.08998 * 109.46766 * 89.99697 * 11 10 9 38 38 H 1.08998 * 109.47749 * 210.00158 * 11 10 9 39 39 H 1.09004 * 109.47167 * 330.00129 * 11 10 9 40 40 H 1.08996 * 109.47223 * 35.18555 * 15 14 13 41 41 H 1.09008 * 109.46826 * 155.18253 * 15 14 13 42 42 H 1.09004 * 109.47523 * 295.00867 * 16 15 14 43 43 H 1.09000 * 109.47119 * 55.01079 * 16 15 14 44 44 H 1.09002 * 109.47125 * 175.00897 * 16 15 14 45 45 H 1.08996 * 109.58434 * 173.39604 * 17 6 5 46 46 H 1.09000 * 109.58799 * 293.82253 * 17 6 5 47 47 H 1.08997 * 109.49848 * 65.32183 * 18 17 6 48 48 H 1.09003 * 109.49117 * 185.41391 * 18 17 6 49 49 H 0.97004 * 120.00396 * 24.99953 * 21 19 3 50 50 H 0.96997 * 120.00113 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2416 3.4656 1.3493 7 6 1.4818 4.5579 1.5637 8 8 0.2719 4.4534 1.6305 9 6 2.1163 5.8775 1.7171 10 6 2.5376 6.4636 2.8816 11 6 2.4427 5.8845 4.2697 12 7 3.0473 7.6481 2.5433 13 7 2.9580 7.8045 1.2708 14 7 2.4133 6.7743 0.7243 15 6 2.1544 6.5934 -0.7063 16 6 0.8204 7.2483 -1.0700 17 6 3.6923 3.5898 1.1522 18 6 4.0741 2.8879 -0.1549 19 6 3.5656 1.4448 -0.1217 20 1 3.9990 0.9267 0.7337 21 7 3.9578 0.7607 -1.3563 22 6 5.1962 0.1848 -1.4562 23 1 5.8839 0.2354 -0.6250 24 6 5.5677 -0.4639 -2.6259 25 7 6.7578 -1.0178 -2.7218 26 14 4.3784 -0.5507 -4.0639 27 1 4.5816 0.6266 -4.9460 28 1 4.6245 -1.7956 -4.8353 29 1 2.9839 -0.5521 -3.5535 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 0.5497 2.2174 1.3538 36 1 1.9908 1.5397 2.1546 37 1 3.3448 5.3126 4.4872 38 1 2.3412 6.6924 4.9943 39 1 1.5736 5.2296 4.3316 40 1 2.9556 7.0567 -1.2820 41 1 2.1110 5.5286 -0.9358 42 1 0.0091 6.7270 -0.5618 43 1 0.8319 8.2930 -0.7592 44 1 0.6697 7.1915 -2.1480 45 1 3.9641 4.6437 1.0940 46 1 4.2158 3.1208 1.9853 47 1 3.6221 3.4138 -0.9958 48 1 5.1586 2.8891 -0.2650 49 1 3.3403 0.7156 -2.1031 50 1 7.0175 -1.4707 -3.5392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037855700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:43 Heat of formation + Delta-G solvation = 46.523420 kcal Electronic energy + Delta-G solvation = -30901.313145 eV Core-core repulsion = 26965.002664 eV Total energy + Delta-G solvation = -3936.310482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.45518 -41.36782 -39.28079 -36.75040 -36.39709 -35.40960 -33.78075 -33.63245 -32.05126 -31.57046 -30.27033 -28.90093 -27.00480 -25.80179 -25.27503 -24.62860 -23.45877 -22.28348 -22.20006 -21.37153 -20.60581 -19.55961 -18.86978 -17.89158 -17.63843 -17.08744 -16.78759 -16.31860 -16.05470 -15.59529 -15.55449 -15.27232 -14.79049 -14.75508 -14.60871 -14.59720 -14.43616 -14.08591 -13.97625 -13.71111 -13.55039 -13.41029 -13.20160 -13.14285 -13.01084 -12.91294 -12.73876 -12.60683 -12.56214 -12.25483 -12.04755 -12.01488 -11.85324 -11.66677 -11.54952 -11.39344 -11.19815 -11.15634 -10.89816 -10.26735 -9.89582 -9.27435 -7.98994 -5.31243 0.12636 0.72852 1.24212 1.36581 1.38660 1.40426 1.48234 1.77815 2.50165 2.96865 3.26720 3.32937 3.47134 3.53514 3.67133 3.76185 3.80895 3.88577 3.93081 4.07280 4.13171 4.21798 4.25532 4.36913 4.42272 4.56075 4.56581 4.58428 4.64135 4.71111 4.72106 4.74627 4.77089 4.80879 4.90116 4.96942 4.99036 5.01460 5.12549 5.21092 5.24019 5.29880 5.33352 5.41118 5.46444 5.59783 5.81539 6.04806 6.24883 6.72462 7.11610 7.24146 7.87987 8.05771 9.22580 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003613 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.121930 B = 7747.589034 C = 8239.154575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.068 0.932 5 C 0.124 3.876 6 N -0.583 5.583 7 C 0.605 3.395 8 O -0.547 6.547 9 C -0.067 4.067 10 C 0.022 3.978 11 C -0.072 4.072 12 N -0.293 5.293 13 N -0.079 5.079 14 N -0.259 5.259 15 C 0.096 3.904 16 C -0.162 4.162 17 C 0.119 3.881 18 C -0.141 4.141 19 C 0.183 3.817 20 H 0.052 0.948 21 N -0.745 5.745 22 C -0.218 4.218 23 H 0.061 0.939 24 C -0.061 4.061 25 N -0.985 5.985 26 Si 0.945 3.055 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.250 1.250 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.363 0.637 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 12.591 8.971 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.116 4.116 4 H 0.086 0.914 5 C 0.002 3.998 6 N -0.314 5.314 7 C 0.389 3.611 8 O -0.424 6.424 9 C -0.202 4.202 10 C -0.119 4.119 11 C -0.130 4.130 12 N -0.158 5.158 13 N -0.058 5.058 14 N -0.057 5.057 15 C -0.023 4.023 16 C -0.220 4.220 17 C -0.004 4.004 18 C -0.182 4.182 19 C 0.075 3.925 20 H 0.070 0.930 21 N -0.387 5.387 22 C -0.349 4.349 23 H 0.079 0.921 24 C -0.252 4.252 25 N -0.636 5.636 26 Si 0.773 3.227 27 H -0.209 1.209 28 H -0.230 1.230 29 H -0.175 1.175 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.094 0.906 46 H 0.110 0.890 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.197 0.803 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.935 13.839 8.768 21.508 hybrid contribution -0.341 -1.257 -1.357 1.881 sum -14.277 12.582 7.411 20.422 Atomic orbital electron populations 1.21805 0.94608 1.02058 1.02078 1.21420 0.96268 0.94893 1.02424 1.21699 0.95093 0.96950 0.97865 0.91363 1.21881 0.99937 0.80311 0.97684 1.48111 1.08742 1.06421 1.68163 1.16771 0.85475 0.82077 0.76820 1.90828 1.14073 1.85934 1.51548 1.21823 1.11762 0.96264 0.90354 1.22650 0.99921 0.91920 0.97408 1.20303 1.04070 1.01416 0.87258 1.74804 1.19772 1.17224 1.03957 1.78113 1.14765 1.09636 1.03275 1.48107 1.37014 1.10641 1.09984 1.22606 1.02198 1.04707 0.72814 1.22127 0.93982 1.01115 1.04776 1.21792 0.78758 1.01140 0.98744 1.22465 1.01556 0.97775 0.96389 1.20388 0.92728 0.90802 0.88609 0.93029 1.42745 1.14837 1.66364 1.14762 1.18988 0.91329 1.25589 0.98989 0.92142 1.25377 0.98060 1.01033 1.00759 1.69867 1.21740 1.43676 1.28315 0.85560 0.80266 0.76658 0.80168 1.20920 1.22971 1.17452 0.91535 0.92242 0.93124 0.91428 0.93101 0.88205 0.88947 0.88409 0.88878 0.90171 0.84960 0.87494 0.92856 0.91500 0.86854 0.90600 0.89031 0.92202 0.91727 0.80331 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.67 71.98 0.70 -2.28 16 2 C -0.11 -2.79 5.31 30.59 0.16 -2.63 16 3 C -0.10 -2.38 1.93 -10.72 -0.02 -2.40 16 4 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.12 2.57 5.33 86.36 0.46 3.03 16 6 N -0.58 -12.52 2.97 -823.00 -2.45 -14.96 16 7 C 0.60 14.57 6.71 86.61 0.58 15.15 16 8 O -0.55 -15.99 16.52 -4.10 -0.07 -16.06 16 9 C -0.07 -1.60 4.70 40.40 0.19 -1.41 16 10 C 0.02 0.51 7.30 42.04 0.31 0.82 16 11 C -0.07 -1.19 10.28 71.24 0.73 -0.46 16 12 N -0.29 -8.03 12.35 -47.88 -0.59 -8.62 16 13 N -0.08 -2.10 13.14 37.02 0.49 -1.61 16 14 N -0.26 -5.88 3.38 -335.43 -1.13 -7.02 16 15 C 0.10 1.56 6.99 86.38 0.60 2.17 16 16 C -0.16 -2.31 10.24 71.98 0.74 -1.57 16 17 C 0.12 2.54 6.32 86.36 0.55 3.08 16 18 C -0.14 -3.86 5.66 30.67 0.17 -3.69 16 19 C 0.18 5.68 2.19 45.02 0.10 5.78 16 20 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 21 N -0.74 -30.43 4.14 -322.81 -1.34 -31.77 16 22 C -0.22 -11.33 10.41 84.03 0.87 -10.45 16 23 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 24 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 25 N -0.98 -60.81 13.97 21.65 0.30 -60.51 16 26 Si 0.94 43.22 27.74 68.60 1.90 45.12 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 30 H 0.07 1.16 6.70 -2.39 -0.02 1.15 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.57 7.22 -2.39 -0.02 1.55 16 35 H 0.10 2.10 5.71 -2.39 -0.01 2.09 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 40 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.11 1.70 7.75 -2.38 -0.02 1.68 16 42 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.62 6.37 -2.39 -0.02 1.60 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.36 14.61 5.37 -92.71 -0.50 14.11 16 50 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -69.89 399.05 4.11 -65.79 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.38 Total: 27.43 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.61 Total: 2.21 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -4.72 Total: -124.49 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.07 Total: -16.06 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.90 Total: 45.12 kcal Total: -69.89 4.11 -65.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037855700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.313 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds